View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_high_30 (Length: 235)
Name: NF11453A_high_30
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_high_30 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 3651210 - 3651424
Alignment:
| Q |
20 |
aagtggatgtcaaacacgtcaatggggttggtaagaatatcatgaagctaattaattctagtaattgaaatgaattgaaagagttgcatgtgtatcttaa |
119 |
Q |
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| T |
3651210 |
aagtggatgtcaaaaacgtcaatggggttggtaagaatatcatgaagctaattaattatagtaatgaaaataaagtgaaagagttgcatgtgtatcttaa |
3651309 |
T |
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| Q |
120 |
aacagaaaacgtggcaatcgattttgatatggttaggggttctagaagaaacaacaatgccacaaagtagaaatgttaaacatttttcttaagactaatt |
219 |
Q |
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| T |
3651310 |
aacagaaaa-gtggcaatcgattttgatatgtttaggggttctagaagaaacaacaatgccacaaagaagaaatgttaaacatttttcttaagactaatt |
3651408 |
T |
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| Q |
220 |
aaattccatatgagct |
235 |
Q |
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| T |
3651409 |
aaatttcatatgagct |
3651424 |
T |
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