View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_high_6 (Length: 529)
Name: NF11453A_high_6
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 24 - 512
Target Start/End: Complemental strand, 43703564 - 43703074
Alignment:
| Q |
24 |
gatggaccaatcacaagataagaatctcacaagacaaactcaactagtattttgattcctcaatgtaggtggttgaaccaacaaaagtaattcattatca |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
43703564 |
gatggaccaatcacaagataagaatctcacaagacaaactcaactagtattttgattcctcaatgtagatggttgaac-aacaaaagtaattcattatca |
43703466 |
T |
|
| Q |
124 |
atacgaaaaagagtgtgcatttgggcaagtgttcgataaaggtggttttagatgaacataagtttataaaattgnnnnnnnnnnn---aaaccaaagtat |
220 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| |
|
|
| T |
43703465 |
atacgaaaaaaagtgtgcatttgggcaagtgttcgataaaggtggttttagataaacataagtttataaaattgttttttttttggtaaacccaaagtat |
43703366 |
T |
|
| Q |
221 |
tctctgcatgcaattgaaagactaatccctcgagatactatcaaacacaatgtatgcctctcccaacagaatttgcttgattcacaaaaactaaattttg |
320 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43703365 |
tccaggcatgcaattgaaagactaatccctcgagatactatcaaacacaatgtaggcctctcccaacagaatttgcttgattcacaaaaactaaattttg |
43703266 |
T |
|
| Q |
321 |
aatcctatacctcttgctcaagggatccgagccccttcaagtcggaccaactcatgttggtgataaaagtaatgtgaataaaaccaagtttaaactttgt |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43703265 |
aatcctatacctcttgctcaagggatccgagccccttcaagtcggaccaactcatgttggcgataaaagtaatgtgaataaaacaaagtttaaactttgt |
43703166 |
T |
|
| Q |
421 |
agtgaaataaagtatgttttattttgctcaaaaagcaagtctaacatgaaactttggtgtaaatttctctgcataagtgtaactgttgatgt |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43703165 |
agtgaaataaagtatgttttattttgctcaaaaagcaagtctaacatgaaactttggtgtaaatttctctgcataagtgtaactgttgatgt |
43703074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University