View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_high_7 (Length: 527)

Name: NF11453A_high_7
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_high_7
NF11453A_high_7
[»] chr4 (1 HSPs)
chr4 (23-527)||(54947807-54948309)


Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 23 - 527
Target Start/End: Original strand, 54947807 - 54948309
Alignment:
Q  23 accgtttgccaagcatttttcatagagataaacccgcaactctctctctcaccgcagggactcatgcagaaattttgaatgccatttaaaaatagtcatt 122  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| | | ||||||| |    ||||||||||||||||||||||||||||||||    
T  54947807 accgtttgccaagcatttttcatagagataaacccgcaattctctctctctcagtagggactga----gaaattttgaatgccatttaaaaatagtcatt 54947902  T
Q  123 tcaatctattaatgtgcgatgtatataatatttgaatttataaaattacaaa--------------acttacggacccgtccgaaaata-------atat 201  Q
    |||||                   ||||||||||||||||||||||||||||              ||||||||||||||||||||||        ||||    
T  54947903 tcaat-------------------ataatatttgaatttataaaattacaaatgcttcttatgattacttacggacccgtccgaaaatgctacatgatat 54947983  T
Q  202 tgttgcaagttattattattgagaacaatttaagtcgtaacattgaaaatagataagatttgtcacacgtttctagagaacaatactctccgttttacaa 301  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |    
T  54947984 tgttgcaagttattattattgagaacaatttaagtcgtaacattaaaaatagataagatttgccacacgtttctagagaaaaatactctccgttttacga 54948083  T
Q  302 atcgattttgttaagaagagttaaatcgaatatgaatacttcaatttgtaaaatgaccttattatcttggcattaacacattgtgtaattgtcttaccac 401  Q
    |||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54948084 atcgattttgttaagaagagttatctctaatatgaatacttcaatttgtaaaatgaccttattatcttggcattaacacattgtgtaattgtcttaccac 54948183  T
Q  402 atgttcttgtttattatgcagagcgtaagaatatcttcaagaaaaagcgaactcactcccgccccattgataccgtattcaagcttccaactgcaactac 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54948184 atgttcttgtttattatgcagagcgtaagaatatcttcaagaaaatgcgaactcactcccgccccattgataccgtattcaagcttccaactgcaactac 54948283  T
Q  502 ttcttggccaaaaggtatccatcatt 527  Q
    ||||||||||||||||||||||||||    
T  54948284 ttcttggccaaaaggtatccatcatt 54948309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University