View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_high_8 (Length: 515)
Name: NF11453A_high_8
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 7 - 474
Target Start/End: Original strand, 36464545 - 36465017
Alignment:
| Q |
7 |
gtttgtggtgcatagagtttgacatggtcatgctgcaaagcaagattccatttcttttgtagatgatcgttgaagaatgttaaatgtgtttgtactgttg |
106 |
Q |
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| T |
36464545 |
gtttgtggtacatagagtttgacatggtcatgctgcaaagcaagattccatttcttttgtagatgatcgttgaagaatgttaaatgtgtttgtactgttg |
36464644 |
T |
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| Q |
107 |
gagtgctttagcagcaatttttctcattttttgtaagttttaattactaactgtgacatacaattcaattcaaaacgaggtgctccaaacacttatgaat |
206 |
Q |
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| T |
36464645 |
gagtgctttagcagcaatttttctcattttttgaaagttctaattactaactgtgacatacaattcaattcaaaacgaggtgctcaaaacacttatgaat |
36464744 |
T |
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| Q |
207 |
tagaagtagaaggatatatagaaaaatg---------ttattcctcaagttgctcttttacattctctcactaactcctccaactctcactctcttaacc |
297 |
Q |
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| T |
36464745 |
tagaagtagaaggatatatagaaaaatggttgagatattattcctcaagttgctctttcacattctctcactaactcctccaactctcactctcttaacc |
36464844 |
T |
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| Q |
298 |
aagaatgtctctactctcatcatagtagtggcatatccttccttaattgagcaatcgaagcttaaccgcagaatactttatattttccgcttctcggcta |
397 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36464845 |
aagaatgtctctactctcatcatagtagtggcata----tccttaattgagcaatcgaagcttaaccgcagaatactttatattttccgcttctcggcta |
36464940 |
T |
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| Q |
398 |
caaaaatgtaccataatgacaagtcaaagtgaatttatgtctcccatgcttggttgattttgttcattttcccacat |
474 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
36464941 |
caaaaatgtaccataatgacaagtcaaagtgaatttatgtctcccacgcctggttgattttgttcattttcccacat |
36465017 |
T |
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