View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_1 (Length: 809)
Name: NF11453A_low_1
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 660; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 11 - 733
Target Start/End: Original strand, 43602615 - 43603349
Alignment:
| Q |
11 |
atggacatcaaaagcgagtgcaattctagcaggaagaccaaagaattgggaagattttgctatgatatcgagcacacaaactctctatcagcagctacaa |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
43602615 |
atggatatcaaaagcgagtgcaattctagcaggaagaccaaagaattgggaagattttgctatgaaatcgagcacacaaactctctatcagcaactacaa |
43602714 |
T |
|
| Q |
111 |
gatcaagtaaatttagatggaaaatgttgtggatgaagctcaagaaagagaagaagaagctacttgagtctacatcatcacctttgcagcaggatcctta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43602715 |
gatcaagtaaatttagatggaaaatgttgtggatgaagctcaagaaagagaagaagaagctacttgagtctacatcatcacctttgcagcaggatcctta |
43602814 |
T |
|
| Q |
211 |
tgatcctttcacttattctcagaattttgaacaagggacagtgtttgatgaaccagattacctgtctagatctttctctgttcggtttgccgatccttgt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43602815 |
tgatcctttcacttattctcagaattttgaacaagggacagtgtttgatgaaccagattacctgtctagatctttctctgttcggtttgccgatccttgt |
43602914 |
T |
|
| Q |
311 |
aaatttattaattatcaaaagaaatgagtagtttaaggcaaagctagggaaatttgagactttatgttagcaatgtttgcatctctttttcttcatatta |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43602915 |
aaatttattaattatcaaaagaaatgagtagtttaaggcaaagctagggaaatttgagactttatgttagcaatgtttgcatctctttttcttcatatta |
43603014 |
T |
|
| Q |
411 |
cttagcctatagtctgattcttctttttgtttatgcaatgtttatcaccggttatatgcatatttttaatttgtaatataagtgagaccattgcacggtg |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43603015 |
cttagcctatagtctgattcttctttttgtttatgcaatgtttatcaccggttatatgcatatttttaatttgtaatataagtgagaccattgcacggtg |
43603114 |
T |
|
| Q |
511 |
gagttcaattttattgatggagaagttatgacttatggggaaattatttttcacaagggttgtaaagtttttaatttgtgcatggggtg-------taag |
603 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
43603115 |
gagttcaattttattgatggagaagttatgacttatggggaaattatttttcataagggtagtaaagtttttaatttgtgcatggggtgtaagagttaag |
43603214 |
T |
|
| Q |
604 |
agttaagaagtgaagtgatgagaggttaaatgtttgatctccattct----caccataaaaactaacaatatt-aacattggttgatttaaagaaagtga |
698 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
43603215 |
agttaagaagtgaagtgatgagaggttaaatgtttgatctccattctcacccaccataaaaactaacaatattaaacattggttgatttaaagaaagtga |
43603314 |
T |
|
| Q |
699 |
atatgggtagaacgaaggttaagtggtttttcatt |
733 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43603315 |
atatgtgtagaacgaaggttaagtggtttttcatt |
43603349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 732 - 787
Target Start/End: Original strand, 43603374 - 43603430
Alignment:
| Q |
732 |
ttgagtaatgtgcgaacc-tctgaaatatttgctcaagggttaattaccctccactt |
787 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43603374 |
ttgagtaatgtgcgaaccctctgaaatatttgctcaagggttaattaccctccactt |
43603430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University