View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_100 (Length: 383)
Name: NF11453A_low_100
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_100 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 6 - 377
Target Start/End: Complemental strand, 35286600 - 35286244
Alignment:
| Q |
6 |
cacaaatagtaaaaataaaggaatattataaataaaggtatccgaacgcgatctagactgcaacatcgatgttttttatgtttacatgaccgcaatatga |
105 |
Q |
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| T |
35286600 |
cacaaatagtaaaaataaaggaatattataaataaaggtctccgaacgcgatctagactgcaacatcgatgttttttatgtttacatgaccgcaatatga |
35286501 |
T |
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| Q |
106 |
atgcggtcacgtaagttgtattggatcatgattctctacaatatcatatattgtgacgcgacggtgaccatgatttaaaacatcgcatatatacatacat |
205 |
Q |
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| T |
35286500 |
atg---------------tattggatcatgattctctacaatatcatatattgtgacgcgacggtgaccatgatttaaaacatcgcatatatacatacat |
35286416 |
T |
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| Q |
206 |
ataacgaggcgaggcacattattaattacctggtgtttttgctgcagaggtgatttcctgtgctgtgggagaaccatgctctctcttactattactgttt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35286415 |
ataacgaggcgaggcacattattaattacctggtgtttttgctgcagaggtgatttcctgtgctgtgggagaaccatgctctctcttactattactgttt |
35286316 |
T |
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| Q |
306 |
ttatttttctgatggccgcaacacggaaagcagttcatgctttcctgatccacgatatattaattaaataac |
377 |
Q |
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| T |
35286315 |
ttatttttctgatggccgcaacacggaaagcagctcatgctttcctgatccacgatatattaattaaataac |
35286244 |
T |
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