View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_105 (Length: 379)

Name: NF11453A_low_105
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_105
NF11453A_low_105
[»] chr1 (31 HSPs)
chr1 (179-373)||(50767536-50767747)
chr1 (5-178)||(20302198-20302372)
chr1 (5-178)||(51752104-51752278)
chr1 (5-178)||(13761577-13761750)
chr1 (5-178)||(51749778-51749952)
chr1 (5-150)||(6823651-6823797)
chr1 (5-178)||(10400196-10400369)
chr1 (31-170)||(16225895-16226034)
chr1 (36-178)||(47179428-47179570)
chr1 (10-145)||(28840451-28840586)
chr1 (31-178)||(47177078-47177224)
chr1 (4-145)||(15823319-15823460)
chr1 (10-145)||(28842266-28842401)
chr1 (61-178)||(6822775-6822893)
chr1 (40-178)||(23783238-23783376)
chr1 (73-179)||(20291279-20291386)
chr1 (5-145)||(13214854-13214994)
chr1 (61-150)||(16231369-16231458)
chr1 (10-145)||(3579991-3580126)
chr1 (4-121)||(41646717-41646834)
chr1 (31-75)||(23783362-23783406)
chr1 (96-178)||(47451405-47451488)
chr1 (36-125)||(30790793-30790882)
chr1 (15-71)||(28207444-28207500)
chr1 (10-126)||(39462310-39462426)
chr1 (61-145)||(49687334-49687418)
chr1 (96-145)||(38925915-38925965)
chr1 (36-85)||(13449947-13449996)
chr1 (5-53)||(14098337-14098385)
chr1 (10-58)||(47451508-47451556)
chr1 (5-53)||(49687405-49687453)
[»] chr4 (39 HSPs)
chr4 (10-176)||(51015042-51015208)
chr4 (5-178)||(11006607-11006781)
chr4 (5-178)||(9176862-9177035)
chr4 (10-170)||(37089745-37089906)
chr4 (31-178)||(16932213-16932360)
chr4 (5-178)||(9174512-9174684)
chr4 (31-180)||(22783170-22783319)
chr4 (10-170)||(24888598-24888758)
chr4 (36-180)||(16934572-16934716)
chr4 (23-178)||(36919971-36920125)
chr4 (10-176)||(22803104-22803270)
chr4 (4-181)||(36921860-36922036)
chr4 (10-178)||(38408993-38409161)
chr4 (10-178)||(5637839-5638006)
chr4 (31-178)||(22780805-22780952)
chr4 (5-178)||(3824939-3825112)
chr4 (10-145)||(22044760-22044897)
chr4 (10-141)||(31849970-31850101)
chr4 (61-178)||(7941133-7941251)
chr4 (5-121)||(11008958-11009075)
chr4 (61-178)||(11434769-11434887)
chr4 (36-178)||(18846923-18847067)
chr4 (10-126)||(5198266-5198382)
chr4 (5-145)||(48486146-48486286)
chr4 (40-145)||(9148087-9148192)
chr4 (61-145)||(22801262-22801346)
chr4 (4-124)||(24880299-24880419)
chr4 (40-145)||(52942869-52942974)
chr4 (10-91)||(22047055-22047135)
chr4 (5-124)||(619813-619932)
chr4 (10-73)||(52942818-52942881)
chr4 (10-147)||(40091786-40091923)
chr4 (5-125)||(24878836-24878956)
chr4 (95-145)||(22048492-22048542)
chr4 (5-52)||(47274647-47274694)
chr4 (36-85)||(16689331-16689380)
chr4 (36-84)||(8529012-8529060)
chr4 (10-54)||(11434873-11434917)
chr4 (10-54)||(22801232-22801276)
[»] chr2 (18 HSPs)
chr2 (5-170)||(19502377-19502542)
chr2 (10-170)||(27104523-27104683)
chr2 (14-179)||(19504720-19504885)
chr2 (31-178)||(24162604-24162752)
chr2 (31-178)||(36559211-36559358)
chr2 (5-145)||(21521061-21521201)
chr2 (40-178)||(36561539-36561677)
chr2 (31-178)||(45332528-45332675)
chr2 (10-145)||(42064264-42064399)
chr2 (5-145)||(6259181-6259321)
chr2 (61-170)||(43623968-43624077)
chr2 (10-86)||(13910415-13910491)
chr2 (5-145)||(22407775-22407915)
chr2 (31-75)||(36561488-36561532)
chr2 (61-126)||(6264546-6264611)
chr2 (60-145)||(40032468-40032553)
chr2 (10-54)||(43623938-43623982)
chr2 (40-75)||(36561518-36561553)
[»] chr3 (36 HSPs)
chr3 (5-178)||(22114669-22114842)
chr3 (38-178)||(6063866-6064006)
chr3 (31-178)||(18099560-18099707)
chr3 (10-177)||(5191374-5191541)
chr3 (31-179)||(50493675-50493823)
chr3 (31-178)||(38210067-38210214)
chr3 (49-162)||(10192401-10192513)
chr3 (37-178)||(53896613-53896754)
chr3 (29-161)||(5899476-5899608)
chr3 (49-162)||(10085481-10085593)
chr3 (10-119)||(10956396-10956505)
chr3 (47-178)||(18097291-18097422)
chr3 (61-179)||(38889756-38889875)
chr3 (29-178)||(5885983-5886133)
chr3 (29-121)||(25388654-25388746)
chr3 (5-179)||(32264407-32264581)
chr3 (61-178)||(35777163-35777280)
chr3 (10-145)||(1321194-1321329)
chr3 (10-145)||(5522984-5523119)
chr3 (61-145)||(11162924-11163008)
chr3 (10-145)||(26720301-26720436)
chr3 (10-85)||(10958692-10958767)
chr3 (63-145)||(11170178-11170260)
chr3 (61-178)||(6719532-6719651)
chr3 (95-178)||(7606880-7606963)
chr3 (10-145)||(24177032-24177167)
chr3 (5-76)||(3859350-3859421)
chr3 (61-120)||(6066195-6066254)
chr3 (5-85)||(45882752-45882832)
chr3 (130-180)||(3859315-3859365)
chr3 (5-54)||(35777266-35777314)
chr3 (36-85)||(4308676-4308725)
chr3 (5-54)||(6719497-6719546)
chr3 (10-55)||(10084762-10084807)
chr3 (10-55)||(10191682-10191727)
chr3 (5-54)||(38889861-38889910)
[»] scaffold0127 (1 HSPs)
scaffold0127 (31-178)||(12907-13054)
[»] chr6 (16 HSPs)
chr6 (10-178)||(14507546-14507716)
chr6 (10-145)||(19227780-19227915)
chr6 (31-178)||(26068735-26068882)
chr6 (10-145)||(8995288-8995423)
chr6 (10-145)||(9019735-9019870)
chr6 (31-178)||(26066464-26066611)
chr6 (31-178)||(33308685-33308832)
chr6 (31-178)||(33310954-33311101)
chr6 (31-178)||(29755132-29755279)
chr6 (10-170)||(11983400-11983558)
chr6 (10-121)||(4816639-4816749)
chr6 (29-145)||(15530512-15530628)
chr6 (5-95)||(30729194-30729284)
chr6 (36-85)||(26084818-26084867)
chr6 (61-126)||(32279845-32279910)
chr6 (10-95)||(15541511-15541596)
[»] chr5 (37 HSPs)
chr5 (31-178)||(34477485-34477632)
chr5 (5-145)||(38881878-38882018)
chr5 (61-178)||(2174680-2174797)
chr5 (5-178)||(31544798-31544971)
chr5 (31-178)||(10749505-10749652)
chr5 (29-170)||(4236378-4236519)
chr5 (5-178)||(31542442-31542615)
chr5 (31-178)||(10756960-10757107)
chr5 (31-178)||(15354918-15355065)
chr5 (31-178)||(15357194-15357341)
chr5 (61-178)||(34479855-34479972)
chr5 (61-178)||(39797849-39797966)
chr5 (10-145)||(16775930-16776065)
chr5 (61-179)||(25921874-25921993)
chr5 (31-179)||(23664833-23664981)
chr5 (31-179)||(23793606-23793754)
chr5 (31-178)||(23667109-23667256)
chr5 (31-121)||(31179807-31179897)
chr5 (10-87)||(21684832-21684909)
chr5 (61-145)||(659746-659829)
chr5 (61-178)||(38960487-38960604)
chr5 (5-145)||(21947803-21947940)
chr5 (43-123)||(659850-659929)
chr5 (80-180)||(18186489-18186589)
chr5 (61-178)||(31466379-31466496)
chr5 (61-145)||(2818729-2818813)
chr5 (5-145)||(20507828-20507968)
chr5 (42-145)||(20504316-20504419)
chr5 (114-178)||(21684905-21684969)
chr5 (80-178)||(36402747-36402845)
chr5 (5-50)||(39797956-39798001)
chr5 (36-85)||(39854317-39854366)
chr5 (36-85)||(42238047-42238096)
chr5 (37-85)||(1240171-1240219)
chr5 (29-85)||(4409890-4409946)
chr5 (62-145)||(12556325-12556408)
chr5 (130-178)||(31179885-31179933)
[»] chr8 (15 HSPs)
chr8 (31-178)||(18812668-18812815)
chr8 (31-178)||(43079347-43079494)
chr8 (39-178)||(43081722-43081861)
chr8 (10-145)||(27826815-27826950)
chr8 (10-145)||(27829126-27829261)
chr8 (10-145)||(12517397-12517532)
chr8 (31-178)||(18810483-18810630)
chr8 (5-178)||(44720617-44720790)
chr8 (10-170)||(14807556-14807716)
chr8 (5-170)||(15067785-15067950)
chr8 (40-145)||(28251988-28252093)
chr8 (5-178)||(15072506-15072679)
chr8 (61-150)||(3886322-3886412)
chr8 (61-145)||(4423868-4423952)
chr8 (10-75)||(28251937-28252002)
[»] chr7 (20 HSPs)
chr7 (10-178)||(3878322-3878490)
chr7 (31-178)||(1047356-1047503)
chr7 (31-178)||(2935070-2935217)
chr7 (31-178)||(9027540-9027687)
chr7 (31-178)||(22136878-22137025)
chr7 (5-179)||(27306595-27306768)
chr7 (31-178)||(40551905-40552052)
chr7 (31-178)||(22107867-22108014)
chr7 (31-178)||(40549627-40549774)
chr7 (5-145)||(35412-35552)
chr7 (5-145)||(44347-44487)
chr7 (61-178)||(40837144-40837261)
chr7 (10-141)||(25542317-25542448)
chr7 (61-178)||(26804345-26804462)
chr7 (10-145)||(18567396-18567531)
chr7 (10-145)||(31435418-31435553)
chr7 (64-145)||(1049699-1049780)
chr7 (10-54)||(26804448-26804492)
chr7 (36-85)||(40946167-40946216)
chr7 (10-91)||(42006404-42006484)
[»] scaffold0250 (1 HSPs)
scaffold0250 (5-137)||(2670-2802)
[»] scaffold0140 (2 HSPs)
scaffold0140 (31-178)||(21915-22062)
scaffold0140 (31-178)||(24190-24337)
[»] scaffold0025 (2 HSPs)
scaffold0025 (10-170)||(69665-69825)
scaffold0025 (61-170)||(73427-73536)
[»] scaffold0472 (1 HSPs)
scaffold0472 (31-178)||(5927-6074)
[»] scaffold0068 (2 HSPs)
scaffold0068 (10-87)||(29001-29078)
scaffold0068 (114-178)||(28941-29005)
[»] scaffold0131 (1 HSPs)
scaffold0131 (5-177)||(14768-14941)
[»] scaffold0339 (1 HSPs)
scaffold0339 (5-52)||(3872-3919)


Alignment Details
Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 179 - 373
Target Start/End: Complemental strand, 50767747 - 50767536
Alignment:
Q  179 ttaattaacttttatatagttagagaaagatgtttgtgaatttacnnnnnnnctactaatgtaacatgttatgacggtatcccttgtga----------- 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||| |||||||||||||||||||||||||||||||||               
T  50767747 ttaattaacttttatatagttagagaaagatgtttgtgaatttacaaaaaaactagtaatgtaacatgttatgacggtatcccttgtgaaggcgtcctga 50767648  T
Q  268 ------tatttttcatgaatatttcgtccttattccatttgtcttttgttttcatctgtacaatttaaaaatgcaccatctatctcattccattcattca 361  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50767647 gagagatatttttcatgaatatttcgtccttattccatttgtcttttgttttcatctgtacaatttaaaaatgcaccatctatctcattccattcattca 50767548  T
Q  362 tatttcattatc 373  Q
    ||||||||||||    
T  50767547 tatttcattatc 50767536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 20302372 - 20302198
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctca-aaaactga 103  Q
    |||| ||||||||| ||||||| || |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  20302372 ccaaaaatatgtttctgttattcgccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacaatttttccagtgccttgcctcaaaaaactga 20302273  T
Q  104 aacctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    ||||||||||||||||||||||||||||||| |||| ||||| |||| ||||||||||| ||||||| |||||||    
T  20302272 aacctccatcgtgccacgttgccttgccatcatgccgcgattctgcagaaatctgattttaagttaactctcaca 20302198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 51752278 - 51752104
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctca-aaaactga 103  Q
    |||| |||| |||||||||||| || |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  51752278 ccaaaaatacgtttatgttattcgccgccagcgcaccatcgtgccacgatgcggccccatcgtgccacgatttttccagtgccttgcctcaaaaaactga 51752179  T
Q  104 aacctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    |||||||||||||||||||||||   |||||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  51752178 aacctccatcgtgccacgttgcccaaccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 51752104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 13761750 - 13761577
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| |||| |||| ||||||| || |||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13761750 ccaaaaatacgtttctgttattcgccgccagcacaccatcgtgccgcgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 13761651  T
Q  105 acctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    ||||||||| ||||||||||||  ||||||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  13761650 acctccatcatgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 13761577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 51749952 - 51749778
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctca-aaaactga 103  Q
    |||| |||| |||| ||||||| || |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  51749952 ccaaaaatacgtttctgttattcgccgccagcgcactatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaaactga 51749853  T
Q  104 aacctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    |||||||||||| ||||||||||   |||||||||||||||| |||| |||  |||||| ||||||| |||||||    
T  51749852 aacctccatcgtaccacgttgcccaaccatcgtgccacgattctgcagaaacttgattttaagttaactctcaca 51749778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 6823797 - 6823651
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctca-aaaactga 103  Q
    |||| |||| |||||||||||| || |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  6823797 ccaaaaatacgtttatgttattcgccgccagcgcaccatcgtgccacgatgcgaccccatcatgccacgatttttccagtgccttgcctcaaaaaactga 6823698  T
Q  104 aacctccatcgtgccacgttgccttgccatcgtgccacgattatgca 150  Q
    |||||||||||||||||||||||   ||||||||||| |||| ||||    
T  6823697 aacctccatcgtgccacgttgcccaaccatcgtgccatgattctgca 6823651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 10400196 - 10400369
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||  ||||    
T  10400196 ccaaaaatacgtttatgttatttgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatatttccagtgctttgcctc-aaacttgaa 10400294  T
Q  105 acctcc-atcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    |||||| ||||||||||||||||  || ||||||||||||||  ||| ||| ||||||| ||||||| |||||||    
T  10400295 acctccaatcgtgccacgttgcccagcaatcgtgccacgattccgcagaaacctgattttaagttaactctcaca 10400369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 31 - 170
Target Start/End: Complemental strand, 16226034 - 16225895
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||   |    
T  16226034 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccaac 16225935  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaa 170  Q
    | ||||||||||||| |||| ||| ||||||| |||||||    
T  16225934 cgtcgtgccacgattctgcagaaacctgattttaagttaa 16225895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 36 - 178
Target Start/End: Complemental strand, 47179570 - 47179428
Alignment:
Q  36 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcg 135  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||  ||||||| ||||||||||||||||||||||||  ||| |||    
T  47179570 cgcaccatcgtgccacgatgagaccccatcgtgccacgattttttcagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagccgtcg 47179471  T
Q  136 tgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    |||||||||| |||| ||| ||||||| ||||||| |||||||    
T  47179470 tgccacgattctgcagaaacctgattttaagttaactctcaca 47179428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 28840586 - 28840451
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    ||||||||| |||| || ||||||| | ||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| |||||||||||||||    
T  28840586 aatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgatcccatcgtgccacaatttttccagtaccttgcct-aaaaactgaaacctc 28840488  T
Q  110 c-atcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    | |||||||||||||||||||||||||||||||||||    
T  28840487 caatcgtgccacgttgccttgccatcgtgccacgatt 28840451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 47177224 - 47177078
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||  |     
T  47177224 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgtcttgcc-caaaaactaaaacctccatcgtgccacgttgcccagt 47177126  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  47177125 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 47177078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 145
Target Start/End: Complemental strand, 15823460 - 15823319
Alignment:
Q  4 tccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactga 103  Q
    ||||| ||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||  |||    
T  15823460 tccaaaaatatgtttctgttatttgctgctagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttctagtgctttgcctc-aaacttga 15823362  T
Q  104 aacctcc-atcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    ||||||| ||||||||||||||||  |||||||||||||||||    
T  15823361 aacctccaatcgtgccacgttgcccagccatcgtgccacgatt 15823319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 28842401 - 28842266
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    ||||||||| |||| || |||||||   ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  28842401 aatatgtttctgtttttcgctgccaggacaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtaccttgcct-aaaaactgaaacctc 28842303  T
Q  110 c-atcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    | |||||||||||| ||||||||||||||||||||||    
T  28842302 caatcgtgccacgtagccttgccatcgtgccacgatt 28842266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 61 - 178
Target Start/End: Complemental strand, 6822893 - 6822775
Alignment:
Q  61 ccatcgtgccacgatttttccagtgccttgcctcaaaaa-ctgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctga 159  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||| |||| ||| ||||    
T  6822893 ccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctccatcgtgccacgttgcccagccatcgtgccacgattctgcagaaacctga 6822794  T
Q  160 tttgaagttaaatctcaca 178  Q
    ||| ||||||| |||||||    
T  6822793 ttttaagttaactctcaca 6822775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 40 - 178
Target Start/End: Complemental strand, 23783376 - 23783238
Alignment:
Q  40 ccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgcc 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||  |||||||    
T  23783376 ccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagctgtcgtgcc 23783277  T
Q  140 acgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    |||||| |||| ||| ||||||| ||||||| |||||||    
T  23783276 acgattgtgcagaaacctgattttaagttaactctcaca 23783238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 73 - 179
Target Start/End: Complemental strand, 20291386 - 20291279
Alignment:
Q  73 gatttttccagtgccttgcctcaaaaa-ctgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaa 171  Q
    ||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||     
T  20291386 gatttttccagtgccatgcctcaaaaaactgaaacctccaccgtgccacgttgccttgccatcgtgccacgattctgcagaaatctgattttaagttaac 20291287  T
Q  172 tctcacat 179  Q
    ||||||||    
T  20291286 tctcacat 20291279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 13214994 - 13214854
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| |||| |||| ||||||||||||||| | ||||||||||||||| ||| | |||||| ||||||||    ||||||| |||||||| |||||||||    
T  13214994 ccaaaaatacgtttttgttatttgctgccaacacaccatcgtgccacgttgcaatcccatcatgccacgaaaaatccagtgacttgcctc-aaaactgaa 13214896  T
Q  105 acctcc-atcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    |||||| ||||||||||||||||   ||||||||||||||||    
T  13214895 acctccaatcgtgccacgttgcccaaccatcgtgccacgatt 13214854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 61 - 150
Target Start/End: Complemental strand, 16231458 - 16231369
Alignment:
Q  61 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgca 150  Q
    ||||||||||||||||||||||||| ||||||  ||||||| ||||||||||||||||||||||||  ||| ||||||||||||| ||||    
T  16231458 ccatcgtgccacgatttttccagtgtcttgcccaaaaaactaaaacctccatcgtgccacgttgcccagccgtcgtgccacgattctgca 16231369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 3579991 - 3580126
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    |||| ||||||| |||| || |||| ||||||||||||||||| ||| | |||| ||| |||||||||||||| || |||||||| | ||||||||| ||    
T  3579991 aatacgtttatgatattcgccgccagcgcaccatcgtgccacgttgcaatcccaccgtaccacgatttttccaatgacttgcctc-ataactgaaacatc 3580089  T
Q  110 c-atcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    | || ||| ||||||||| ||| ||||||||||||||    
T  3580090 caattgtgtcacgttgccctgcaatcgtgccacgatt 3580126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 121
Target Start/End: Complemental strand, 41646834 - 41646717
Alignment:
Q  4 tccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactga 103  Q
    ||||| ||||||||| ||||||| |||||||  |||||||||||||||| ||| | |||| ||||||||||    ||||||| |||||||| ||||||||    
T  41646834 tccaaaaatatgtttctgttattcgctgccagtgcaccatcgtgccacgttgcaatcccaccgtgccacgaaaaatccagtgacttgcctc-aaaactga 41646736  T
Q  104 aacctc-catcgtgccacg 121  Q
    ||||||  |||||||||||    
T  41646735 aacctctaatcgtgccacg 41646717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 23783406 - 23783362
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgat 75  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  23783406 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgat 23783362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 96 - 178
Target Start/End: Complemental strand, 47451488 - 47451405
Alignment:
Q  96 aaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatta-tgcataaatctgatttgaagttaaatctcaca 178  Q
    |||||||||||||||| ||||||||| |||||  |||||||||||||||||  |||| ||||||||||||||||||| |||||||    
T  47451488 aaaactgaaacctccaatcgtgccacattgcccagccatcgtgccacgatttctgca-aaatctgatttgaagttaactctcaca 47451405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 30790793 - 30790882
Alignment:
Q  36 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgc 125  Q
    ||||||||||||||||  ||||| |||||||||||||| ||||||||||| ||||| || | ||||||||| ||| |||||||||| ||||    
T  30790793 cgcaccatcgtgccacattgcgatcccatcgtgccacgttttttccagtgacttgcttc-ataactgaaacatccaatcgtgccacattgc 30790882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 28207444 - 28207500
Alignment:
Q  15 gtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgcca 71  Q
    |||||||||||| || |||| ||||||||||||||||| || |||||||||||||||    
T  28207444 gtttatgttattcgccgccagcgcaccatcgtgccacgttgtgaccccatcgtgcca 28207500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 39462426 - 39462310
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    |||| |||| |||||||  |||| | ||||||||||||||||  ||| | |||||||||||||||    |||| || |||||||| ||||||||||||||    
T  39462426 aatacgtttctgttattcactgcaagcgcaccatcgtgccacattgcaatcccatcgtgccacgaaaaatccactgacttgcctc-aaaactgaaacctc 39462328  T
Q  110 -catcgtgccacgttgcc 126  Q
      ||||||||||||||||    
T  39462327 taatcgtgccacgttgcc 39462310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 49687418 - 49687334
Alignment:
Q  61 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    ||||||||||||||    ||||||| |||||||||||| |||||||||||| | |||||||||||||  |||||| ||||||||||    
T  49687418 ccatcgtgccacgaaaaatccagtgacttgcctcaaaa-ctgaaacctccaattgtgccacgttgcccagccatcatgccacgatt 49687334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 38925915 - 38925965
Alignment:
Q  96 aaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    |||||||||||||||| |||||||||||||||  |||||||| ||||||||    
T  38925915 aaaactgaaacctccaatcgtgccacgttgcccagccatcgtaccacgatt 38925965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 13449947 - 13449996
Alignment:
Q  36 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 85  Q
    |||||||||||| |||||| ||| || |||||| ||||||||||||||||    
T  13449947 cgcaccatcgtggcacgattcgatccaatcgtggcacgatttttccagtg 13449996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 14098337 - 14098385
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacga 53  Q
    |||| |||| |||||||||||| ||||||| ||||||||||||| ||||    
T  14098337 ccaaaaatacgtttatgttattcgctgccagcgcaccatcgtgcaacga 14098385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 47451556 - 47451508
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcga 58  Q
    |||| |||| ||||||| |||| || |||||||||||||||||||||||    
T  47451556 aatacgtttctgttattcgctgtcagcgcaccatcgtgccacgatgcga 47451508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 49687453 - 49687405
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacga 53  Q
    |||| |||| |||||||||||| |||| || ||||||||||||||||||    
T  49687453 ccaaaaatacgtttatgttattcgctgtcagcgcaccatcgtgccacga 49687405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 51015208 - 51015042
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    ||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  51015208 aatatgtttctgttattcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacaatttttccagtgccttgcctaaaaaactgaaacctc 51015109  T
Q  110 catcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctca 176  Q
    ||||||||||||||||||||||||| |||||||||| |||| ||||||||||| ||||||| |||||    
T  51015108 catcgtgccacgttgccttgccatcatgccacgattctgcagaaatctgattttaagttaactctca 51015042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 11006607 - 11006781
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| ||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  11006607 ccaaaaatatgtttctgttttttgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctaaaaaattgaa 11006706  T
Q  105 acctccatcgtgccacgttgccttgccatcgtgccacgattatgcat-aaatctgatttgaagttaaatctcaca 178  Q
    ||||||||||||||||||||||  || |||||||||||||| ||||| ||| ||||||| ||||||| |||||||    
T  11006707 acctccatcgtgccacgttgcccagcgatcgtgccacgattctgcataaaacctgattttaagttaactctcaca 11006781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 9176862 - 9177035
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| ||||||||| |||| ||  |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  9176862 ccaaaaatatgtttctgtttttccctgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcctaaaaaactaaa 9176961  T
Q  105 acctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    |||||||||||||||||||||||  || ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  9176962 acctccatcgtgccacgttgcctaaccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 9177035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 37089745 - 37089906
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    |||| |||| ||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||| |||| ||    
T  37089745 aatacgtttctgttattcgccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcctcacctaaaaaactaaaacatc 37089844  T
Q  110 -catcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaa 170  Q
     |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||    
T  37089845 tcatcgtgccacgttgccttgccatcgtgccacgattctgcagaaatctgattttaagttaa 37089906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 16932213 - 16932360
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||  ||    
T  16932213 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagc 16932312  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  16932313 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 16932360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 9174512 - 9174684
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| ||||||||| |||| ||  |||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| | ||||| ||    
T  9174512 ccaaaaatatgtttctgtttttccctgccagcgcaccatcgtgccacgatgagaccccatcgtgccatgatttttccagtgccttgcctaataaactaaa 9174611  T
Q  105 acctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    ||||||||||||| ||||||||| ||| ||||||||||||| ||||  || ||||||| ||||||| |||||||    
T  9174612 acctccatcgtgctacgttgcctagccgtcgtgccacgattctgca-gaacctgattttaagttaactctcaca 9174684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 31 - 180
Target Start/End: Original strand, 22783170 - 22783319
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||  ||||||| ||||||||||||||||||||||||  ||    
T  22783170 gccagcgcaccatcgtgccacgatgagaccccatcgtgccatgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagc 22783269  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcacatt 180  Q
     ||||| |||||||| |||| ||| ||||||| ||||||| |||||||||    
T  22783270 tatcgtaccacgattctgcagaaacctgattttaagttaactctcacatt 22783319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 24888758 - 24888598
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    ||||||||| |||| || ||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||  |||||||||    
T  24888758 aatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgctttgcctc-aaacttgaaacctc 24888660  T
Q  110 c-atcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaa 170  Q
    | ||||||||||||||||| ||||||||||||| ||| |||| ||||||||||| |||||||    
T  24888659 caatcgtgccacgttgcctagccatcgtgccacaattctgcagaaatctgattttaagttaa 24888598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 36 - 180
Target Start/End: Original strand, 16934572 - 16934716
Alignment:
Q  36 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcg 135  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||| ||||||  ||| |||    
T  16934572 cgcaccatcgtgccaggatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccatgttgcccagccgtcg 16934671  T
Q  136 tgccacgattatgcataaatctgatttgaagttaaatctcacatt 180  Q
    |||||||||| |||| ||| ||||||| ||||||| |||||||||    
T  16934672 tgccacgattctgcagaaacctgattttaagttaactctcacatt 16934716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 23 - 178
Target Start/End: Original strand, 36919971 - 36920125
Alignment:
Q  23 tatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacg 121  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||| |||||||||||    
T  36919971 tattcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgacttgcctc-aaaattgaaacctccaatcgtgccacg 36920069  T
Q  122 ttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    |||||  ||||||||||||||||| ||||  || ||||||| ||||||| |||||||    
T  36920070 ttgcccagccatcgtgccacgattttgca-gaacctgattttaagttaactctcaca 36920125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 10 - 176
Target Start/End: Original strand, 22803104 - 22803270
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    |||| |||| ||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||    
T  22803104 aatacgtttttgttattcgctgccagcgcaccatcgtgccacgatgcgaccccatcgagccacgatttttccagtgcctttcctc-aaaactgaaacctc 22803202  T
Q  110 c-atcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctca 176  Q
    | ||||||||||||||||  |||||||| |||||||| |  | |||| |||||| ||||||| |||||    
T  22803203 caatcgtgccacgttgcccagccatcgtaccacgattctatagaaatttgattttaagttaactctca 22803270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 181
Target Start/End: Original strand, 36921860 - 36922036
Alignment:
Q  4 tccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactga 103  Q
    ||||| |||| |||| ||||||| |||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  36921860 tccaaaaatacgtttctgttattcgctgccaatgcaccatcgtgccacaatgcgaccccatcgtgccacgatttttccagtgacttgcctc-aaaactga 36921958  T
Q  104 aacctcc-atcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcacatta 181  Q
    ||||||| ||||||||| ||||||  |||||||| |||||||| ||||  || ||||||| ||||||| ||||||||||    
T  36921959 aacctccaatcgtgccatgttgcccagccatcgtaccacgattttgca-gaacctgattttaagttaactctcacatta 36922036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 10 - 178
Target Start/End: Complemental strand, 38409161 - 38408993
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    ||||||||| |||| || || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||  |||||||||    
T  38409161 aatatgtttctgtttttcgccgccaacgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgctttgcctc-aaacttgaaacctc 38409063  T
Q  110 c-atcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    | ||||||||||| ||||  || |||||||||||||| |||| |||||| |||| ||||||| |||||||    
T  38409062 caatcgtgccacgatgcccagcaatcgtgccacgattctgcagaaatctaattttaagttaactctcaca 38408993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 10 - 178
Target Start/End: Original strand, 5637839 - 5638006
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    |||| |||| |||| || ||||||| | ||||||| ||||||||||||| ||||||||| || |||||||||||||||||||||| ||||||||||||||    
T  5637839 aatacgtttctgtttttcgctgccagctcaccatcatgccacgatgcgatcccatcgtgacatgatttttccagtgccttgcctc-aaaactgaaacctc 5637937  T
Q  110 catcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    |||||||||||||||||  || ||||||||||||||  ||| ||| ||||||| ||||||| |||||||    
T  5637938 catcgtgccacgttgcccagcaatcgtgccacgattccgcagaaacctgattttaagttaactctcaca 5638006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 22780805 - 22780952
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||  ||||||| ||||||||||||||||||||||||  ||    
T  22780805 gccagcgcaccatcgtgccacaatgagaccccatcgtgccatgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagc 22780904  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
     ||||| |||||||| |||| ||| ||||||| ||||||| |||||||    
T  22780905 tatcgtaccacgattctgcagaaacctgattttaagttaactctcaca 22780952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 3824939 - 3825112
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| |||| |||| ||||||| |  |||| ||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||| |||||||||    
T  3824939 ccaaaaatacgtttctgttattcgtcgccaacgcaccatcgtgccacgatgcgaccccattgtgccatgatttttccagtgctttgcctc-aaaactgaa 3825037  T
Q  105 acctcc-atcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    |||||| ||||||||| ||||||  ||||||||| ||||||| |||| ||| ||||||| ||||||| |||||||    
T  3825038 acctccaatcgtgccatgttgcccagccatcgtgtcacgattctgcagaaacctgattttaagttaactctcaca 3825112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 22044760 - 22044897
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctc--aaaaactgaaacc 107  Q
    ||||||||| |||| ||  |||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||| |||||||    
T  22044760 aatatgtttctgtttttccctgccagcacaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgccttgcctcaaaaaaaatgaaacc 22044859  T
Q  108 tccatcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    ||||||||||||||||||| | | ||||||||||||||    
T  22044860 tccatcgtgccacgttgcccttcaatcgtgccacgatt 22044897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 10 - 141
Target Start/End: Original strand, 31849970 - 31850101
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    ||||||||| |||| || ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||    
T  31849970 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccaagatttttccagtgccttgcc-ccaaaactgaaacctc 31850068  T
Q  110 c-atcgtgccacgttgccttgccatcgtgccac 141  Q
    | ||||||||||||||||  || ||||||||||    
T  31850069 caatcgtgccacgttgcccagcaatcgtgccac 31850101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 61 - 178
Target Start/End: Complemental strand, 7941251 - 7941133
Alignment:
Q  61 ccatcgtgccacgatttttccagtgccttgcctcaaaaa-ctgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctga 159  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||| |||| ||| ||||    
T  7941251 ccatcgtgccaccatttttccagtgccttgcctcaaaaaactgaaacctccatcgtgccacgttgcccagccatcgtgccacgattctgcagaaacctga 7941152  T
Q  160 tttgaagttaaatctcaca 178  Q
    ||| ||||||| |||||||    
T  7941151 ttttaagttaactctcaca 7941133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 11008958 - 11009075
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcct-caaaaactga 103  Q
    |||| ||||||||| |||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||    
T  11008958 ccaaaaatatgtttctgttttttgctgccagtgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctaaaaaaattga 11009057  T
Q  104 aacctccatcgtgccacg 121  Q
    ||||||||| ||||||||    
T  11009058 aacctccattgtgccacg 11009075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 61 - 178
Target Start/End: Complemental strand, 11434887 - 11434769
Alignment:
Q  61 ccatcgtgccacgatttttccagtgccttgcctcaaaaa-ctgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctga 159  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||  |||||||| |||||||| |||| ||| ||||    
T  11434887 ccatcgtgccacgatttttccagtgtcttgcctcaaaaaactgaaacctccatcgtgccacgttgcccagccatcgtaccacgattctgcagaaacctga 11434788  T
Q  160 tttgaagttaaatctcaca 178  Q
    ||| ||||||| |||||||    
T  11434787 ttttaagttaactctcaca 11434769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 36 - 178
Target Start/End: Complemental strand, 18847067 - 18846923
Alignment:
Q  36 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatc 134  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| | ||   | |||    
T  18847067 cgcaccatcgtgccacgatgcgaccccatcgtaccacgatttttccagtaccttgcctc-aaaactgaaacctccaatcgtgccacgattcccaacaatc 18846969  T
Q  135 gtgccacgattatgc--ataaatctgatttgaagttaaatctcaca 178  Q
    ||||||||||| |||  | ||||||||||| ||||||| |||||||    
T  18846968 gtgccacgattctgcagaaaaatctgattttaagttaactctcaca 18846923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 5198382 - 5198266
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    ||||||||| |||| || ||||||| |||||||||||||||||||| || |||||||||||||||||||||||| || ||||||| |||  ||||| |||    
T  5198382 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgtgatcccatcgtgccacgatttttccagagctttgcctc-aaacttgaaatctc 5198284  T
Q  110 c-atcgtgccacgttgcc 126  Q
    | ||||||||||||||||    
T  5198283 caatcgtgccacgttgcc 5198266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 48486286 - 48486146
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| |||| |||| ||||||| ||||||| |||||||| |||||||  || ||||||||||||||||||    ||||||| |||||||| |||||||||    
T  48486286 ccaaaaatacgtttctgttattcgctgccagcgcaccattgtgccacattgtgaccccatcgtgccacgaaaaatccagtgacttgcctc-aaaactgaa 48486188  T
Q  105 acctcc-atcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    |||||| |||||||||||||||   |||||||||||||||||    
T  48486187 acctccaatcgtgccacgttgctcagccatcgtgccacgatt 48486146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 40 - 145
Target Start/End: Complemental strand, 9148192 - 9148087
Alignment:
Q  40 ccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgc 138  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||  |||||||||| |||| |||||||||||  || ||||| |    
T  9148192 ccatcgtgccacgatgcaaccccatcgtgccacgatttttccagtgctttgcctc-aaacttgaaacctccaatcgcgccacgttgcccagcaatcgtac 9148094  T
Q  139 cacgatt 145  Q
    |||||||    
T  9148093 cacgatt 9148087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 22801262 - 22801346
Alignment:
Q  61 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||| |||||||||   ||||||||||||||||    
T  22801262 ccatcgtgccacgatttttccagttccttgcctc-aaaactgaaacctccaatcgtgtcacgttgcccaaccatcgtgccacgatt 22801346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 24880419 - 24880299
Alignment:
Q  4 tccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactga 103  Q
    ||||| |||| |||| ||||||| ||||||| ||||||||||||||||| ||| | ||||||||||| |||    ||||||| |||||||| ||||||||    
T  24880419 tccaaaaatacgtttctgttattcgctgccagcgcaccatcgtgccacgttgcaatcccatcgtgccgcgaaaaatccagtgacttgcctc-aaaactga 24880321  T
Q  104 aacctcca-tcgtgccacgttg 124  Q
    |||||||| |||||||||||||    
T  24880320 aacctccattcgtgccacgttg 24880299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 40 - 145
Target Start/End: Original strand, 52942869 - 52942974
Alignment:
Q  40 ccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgc 138  Q
    ||||||||||||| || ||||||||||||||||||  | | ||||| |||||||| ||| ||||||||||| ||||||||||||||||   |||||||||    
T  52942869 ccatcgtgccacgttgtgaccccatcgtgccacgaaatattcagtgacttgcctc-aaagctgaaacctccaatcgtgccacgttgcccaaccatcgtgc 52942967  T
Q  139 cacgatt 145  Q
    |||||||    
T  52942968 cacgatt 52942974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 22047055 - 22047135
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgc 91  Q
    ||||||||| |||| ||  |||||| | ||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  22047055 aatatgtttctgtttttccctgccagcacaccatcgtgccacgatgcgatcccatcgtgcca-gatttttccagtgccttgc 22047135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 619813 - 619932
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| ||||||||| ||||||| || |||| |||||||| |||||||| |||||||||||||||||||||    |||| || |||||||| |||||||||    
T  619813 ccaaaaatatgtttctgttattcgccgccagcgcaccattgtgccacgttgcgaccccatcgtgccacgaaaaatccaatgacttgcctc-aaaactgaa 619911  T
Q  105 acctcc-atcgtgccacgttg 124  Q
    || ||| || |||||||||||    
T  619912 acatccaattgtgccacgttg 619932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 52942818 - 52942881
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacg 73  Q
    ||||||||||||||||| ||||||| |||| |||||||||||| || |||||||||||||||||    
T  52942818 aatatgtttatgttattcgctgccagcgcatcatcgtgccacgttgtgaccccatcgtgccacg 52942881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 147
Target Start/End: Original strand, 40091786 - 40091923
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    |||| ||||| |||||| |||| ||  ||||||||||| |||| |||||||||||| || ||||||||||||| || ||| | || |||||||||| |||    
T  40091786 aatacgtttacgttattcgctgtcagtgcaccatcgtgtcacgttgcgaccccatcatggcacgatttttccaatggcttacttc-aaaactgaaatctc 40091884  T
Q  110 c-atcgtgccacgttgccttgccatcgtgccacgattat 147  Q
    | ||||||||||||| ||   ||| ||||||||||||||    
T  40091885 caatcgtgccacgttacccaaccaccgtgccacgattat 40091923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 125
Target Start/End: Complemental strand, 24878956 - 24878836
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| |||| |||| ||||||| | ||||| || |||||||||||||| ||| | |||||||||||||||    ||||||| ||||| || |||||||||    
T  24878956 ccaaaaatacgtttctgttattcgatgccagcgtaccatcgtgccacgttgcaatcccatcgtgccacgaaaaatccagtgacttgcgtc-aaaactgaa 24878858  T
Q  105 acctcc-atcgtgccacgttgc 125  Q
    |||||| |||||||||||||||    
T  24878857 acctccaatcgtgccacgttgc 24878836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 22048492 - 22048542
Alignment:
Q  95 aaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    |||||||||||||||||||||||||||||||| | | ||||||||||||||    
T  22048492 aaaaactgaaacctccatcgtgccacgttgcccttcaatcgtgccacgatt 22048542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 47274694 - 47274647
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacg 52  Q
    |||| |||| |||||||||||| ||||||| |||||||||||||||||    
T  47274694 ccaaaaatacgtttatgttattcgctgccatcgcaccatcgtgccacg 47274647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 16689331 - 16689380
Alignment:
Q  36 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 85  Q
    ||||||||||||||||| |||||   ||||||| ||||||||||||||||    
T  16689331 cgcaccatcgtgccacgttgcgatttcatcgtggcacgatttttccagtg 16689380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 8529060 - 8529012
Alignment:
Q  36 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagt 84  Q
    |||||||||||| ||||||||| |  ||||||| |||||||||||||||    
T  8529060 cgcaccatcgtggcacgatgcggcttcatcgtggcacgatttttccagt 8529012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 11434917 - 11434873
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgat 54  Q
    ||||||||| |||| || ||||||| |||||||||||||||||||    
T  11434917 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgat 11434873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 22801232 - 22801276
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgat 54  Q
    |||| |||| ||||||||||||||  |||||||||||||||||||    
T  22801232 aatacgtttctgttatttgctgccggcgcaccatcgtgccacgat 22801276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 5 - 170
Target Start/End: Original strand, 19502377 - 19502542
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| ||||||||| ||||||| |  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19502377 ccaaaaatatgtttctgttattcgtcgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctaaaaaactgaa 19502476  T
Q  105 acctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaa 170  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||| |||||||    
T  19502477 acctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaa 19502542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 27104683 - 27104523
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    |||||||||||||| ||  |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27104683 aatatgtttatgtttttccctgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 27104584  T
Q  110 catcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaa 170  Q
    ||||||||||||||||| | | |||||||||||||| |||| ||||||||||| |||||||    
T  27104583 catcgtgccacgttgcccttcaatcgtgccacgattctgcagaaatctgattttaagttaa 27104523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 19504720 - 19504885
Alignment:
Q  14 tgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatc 113  Q
    ||||| ||||||| |  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||    
T  19504720 tgtttctgttattcgtcgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctaaaaaattaaaacctccatc 19504819  T
Q  114 gtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcacat 179  Q
    ||||||||||||||||||||||||||| |||| |||  ||| ||||||| ||||||| | ||||||    
T  19504820 gtgccacgttgccttgccatcgtgccatgattctgctgaaacctgattttaagttaactttcacat 19504885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 24162604 - 24162752
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctc-aaaaactgaaacctccatcgtgccacgttgccttg 129  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       
T  24162604 gccagcgcacaatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctccatcgtgccacgttgcccaa 24162703  T
Q  130 ccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    |||| ||||||||||| |||| |||  |||||| ||||||| |||||||    
T  24162704 ccattgtgccacgattctgcagaaacttgattttaagttaactctcaca 24162752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 36559211 - 36559358
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  36559211 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 36559310  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  36559311 cgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 36559358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 21521061 - 21521201
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| |||| |||||||||||| ||||||| ||||||||||||||||| ||||| ||||||||| |||||||||||||||| ||||| || |||||||||    
T  21521061 ccaaaaatacgtttatgttattcgctgccagcgcaccatcgtgccacgttgcgatcccatcgtggcacgatttttccagtggcttgcttc-aaaactgaa 21521159  T
Q  105 acctcc-atcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    |||||| ||||||||||||||||  |||||||||||||||||    
T  21521160 acctccaatcgtgccacgttgcccagccatcgtgccacgatt 21521201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 40 - 178
Target Start/End: Original strand, 36561539 - 36561677
Alignment:
Q  40 ccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgcc 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||  |  |||  ||| |||||||    
T  36561539 ccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgtgaagcccagccgtcgtgcc 36561638  T
Q  140 acgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    |||||| |||| ||| ||||||| ||||||| |||||||    
T  36561639 acgattgtgcagaaacctgattttaagttaactctcaca 36561677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 45332528 - 45332675
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  45332528 gccagcgcaccatcgtgccacgatgtgaccccatcgttccacgatttttccagttccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 45332627  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  45332628 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 45332675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 42064399 - 42064264
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    ||||||||| |||| || ||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||| |||  |||||||||    
T  42064399 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgtgatcccatcgtgccacgatttttccagtgctttgcctc-aaacttgaaacctc 42064301  T
Q  110 ca-tcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    || |||| ||||||||||  || ||||||||||||||    
T  42064300 cagtcgtaccacgttgcccagcaatcgtgccacgatt 42064264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 6259181 - 6259321
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| ||||||||| |||||||  | |||| |||||||||||| |||| ||||| |||||||||||||||||||||||||| ||| |||| |||||||||    
T  6259181 ccaaaaatatgtttctgttattcaccgccagcgcaccatcgtgtcacgttgcgatcccatcgtgccacgatttttccagtgactttcctc-aaaactgaa 6259279  T
Q  105 acctcc-atcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    || ||| || ||||||||||||   |||||||||||||||||    
T  6259280 acatccaatagtgccacgttgcacagccatcgtgccacgatt 6259321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 61 - 170
Target Start/End: Original strand, 43623968 - 43624077
Alignment:
Q  61 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgccacgattatgcataaatctga 159  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||| ||||||  |||||||||||| |||| |||| ||| ||||    
T  43623968 ccatcgtgccacgattttttcagtgccttgcctc-aaaactgaaacctccaatcgtgccatgttgcccagccatcgtgccatgattctgcagaaacctga 43624066  T
Q  160 tttgaagttaa 170  Q
    ||| |||||||    
T  43624067 ttttaagttaa 43624077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 13910415 - 13910491
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgc 86  Q
    ||||||||| |||| || ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13910415 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacaatgcgaccccatcgtgccacgatttttccagtgc 13910491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 22407775 - 22407915
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| |||| |||| ||||||| ||||||| ||||||||||||||||| || || ||||||||||||| |||||| || || |||||||| |||||||||    
T  22407775 ccaaaaatacgtttctgttattcgctgccaacgcaccatcgtgccacgttgtgatcccatcgtgccacaattttttcactgacttgcctc-aaaactgaa 22407873  T
Q  105 acctcc-atcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    || ||| ||||||||| ||| || | | ||||||||||||||    
T  22407874 acatccaatcgtgccatgttacccttcaatcgtgccacgatt 22407915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 36561488 - 36561532
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgat 75  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  36561488 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgat 36561532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 6264546 - 6264611
Alignment:
Q  61 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgcc 126  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||| ||| ||| ||||||||||||    
T  6264546 ccatcgtgccacgatttttccagtgacttgcctc-aaaactgaaacatccaatcatgccacgttgcc 6264611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 40032468 - 40032553
Alignment:
Q  60 cccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    |||||||||||||||    ||||||| |||| ||||||| |||||||||||| |||||||||||||||  |||||||||||||||||    
T  40032468 cccatcgtgccacgaaaaatccagtgacttgtctcaaaa-ctgaaacctccaatcgtgccacgttgcccagccatcgtgccacgatt 40032553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 43623938 - 43623982
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgat 54  Q
    |||| |||||||||||||||||||| |||||||||||||||||||    
T  43623938 aatacgtttatgttatttgctgccagcgcaccatcgtgccacgat 43623982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 75
Target Start/End: Original strand, 36561518 - 36561553
Alignment:
Q  40 ccatcgtgccacgatgcgaccccatcgtgccacgat 75  Q
    ||||||||||||||||||||||||||||||||||||    
T  36561518 ccatcgtgccacgatgcgaccccatcgtgccacgat 36561553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 22114669 - 22114842
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| |||| |||| ||||||| || |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22114669 ccaaaaatacgtttctgttattcgccgccatcgcaccatcgtgccacgatgcgaccccatcgtgccacaatttttccagtgccttgcctcaaaaactgaa 22114768  T
Q  105 acctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    ||||||||||||||||||||||   |||||||||||||||| | || ||| ||||||| ||||||| |||||||    
T  22114769 acctccatcgtgccacgttgcccaaccatcgtgccacgattctacagaaacctgattttaagttaactctcaca 22114842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 38 - 178
Target Start/End: Original strand, 6063866 - 6064006
Alignment:
Q  38 caccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtg 137  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||| |||||||||| ||||||||||||||||||||||||    
T  6063866 caccatcgtgccacgatgcgaccccatcgtgccacgattttttcagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtg 6063965  T
Q  138 ccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    |||||||| |||||||| ||||||| ||||||| |||||||    
T  6063966 ccacgattctgcataaacctgattttaagttaattctcaca 6064006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 18099560 - 18099707
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttg 129  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||  |    
T  18099560 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgtcttgcctc-aaaactgaaacctccaatcgtgccacgttgcccag 18099658  T
Q  130 ccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    |||||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  18099659 ccatcgtgccacgattttgcagaaacctgattttaagttaactctcaca 18099707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 177
Target Start/End: Complemental strand, 5191541 - 5191374
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    ||||||||| |||| || ||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  5191541 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgagatcccatcgtgccacgatttttccagtaccttgcctc-aaaactgaaacctc 5191443  T
Q  110 c-atcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcac 177  Q
    | ||||||||||| ||||  || |||||||||||||| |||| ||||||||||| ||||||| ||||||    
T  5191442 caatcgtgccacgatgcccagcaatcgtgccacgattctgcagaaatctgattttaagttaactctcac 5191374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 31 - 179
Target Start/End: Complemental strand, 50493823 - 50493675
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||  ||    
T  50493823 gccagcgcaccatcgtgccacgatgagactccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagc 50493724  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcacat 179  Q
     |||||||||||||| |||| ||| ||||||| ||||||| ||||||||    
T  50493723 tatcgtgccacgattctgcagaaacctgattttaagttaactctcacat 50493675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 38210214 - 38210067
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||  ||    
T  38210214 gccagcgcactatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagc 38210115  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  38210114 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 38210067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 49 - 162
Target Start/End: Original strand, 10192401 - 10192513
Alignment:
Q  49 cacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatg 148  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||  |    
T  10192401 cacgatgcgatcccatcgtgccacgatttttccagtgccttgcctcaaaa-ctgaaacctccatcgtgccacgttgccttgcgatcgtgccacgattccg 10192499  T
Q  149 cataaatctgattt 162  Q
    ||||||||||||||    
T  10192500 cataaatctgattt 10192513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 37 - 178
Target Start/End: Original strand, 53896613 - 53896754
Alignment:
Q  37 gcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgt 136  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||  ||||||| ||||||||||||||||||||||||  || |||||    
T  53896613 gcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtaccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagcaatcgt 53896712  T
Q  137 gccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    ||||||||| |||| ||| ||||||| ||||||| |||||||    
T  53896713 gccacgattctgcagaaacctgattttaagttaactctcaca 53896754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 29 - 161
Target Start/End: Complemental strand, 5899608 - 5899476
Alignment:
Q  29 ctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgcctt 128  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||| |    
T  5899608 ctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccatgatttttccagtgccttgcctaaaaaactaaaacatccatcgtgccacgttgccct 5899509  T
Q  129 gccatcgtgccacgattatgcataaatctgatt 161  Q
     | ||||||||| ||||||||| ||| ||||||    
T  5899508 tcaatcgtgccatgattatgcagaaacctgatt 5899476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 49 - 162
Target Start/End: Original strand, 10085481 - 10085593
Alignment:
Q  49 cacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatg 148  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||  |    
T  10085481 cacgatgtgatcccatcgtgccacgatttttccagtgccttgcctcaaaa-ctgaaacctccatcgtgccacgttgccttgcgatcatgccacgattccg 10085579  T
Q  149 cataaatctgattt 162  Q
    ||||||||||||||    
T  10085580 cataaatctgattt 10085593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 10956396 - 10956505
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    |||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  10956396 aatacgtttatgttattcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcc-ccaaaactgaaacctc 10956494  T
Q  110 c-atcgtgcca 119  Q
    | |||||||||    
T  10956495 caatcgtgcca 10956505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 47 - 178
Target Start/End: Original strand, 18097291 - 18097422
Alignment:
Q  47 gccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    ||||| |||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||| ||||||||||||||||  |||||||||||||||||    
T  18097291 gccactatgcgaccccatcgtgccacgatttttcctatgccttgcctc-aaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgatt 18097389  T
Q  146 atgcataaatctgatttgaagttaaatctcaca 178  Q
     |||| ||| ||||||| ||||||| |||||||    
T  18097390 ttgcagaaacctgattttaagttaactctcaca 18097422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 61 - 179
Target Start/End: Complemental strand, 38889875 - 38889756
Alignment:
Q  61 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgca-taaatctga 159  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||  ||| || |    
T  38889875 ccatcgtgccacgatttttccaatgccttgcctaaaaaactgaaacctccatcgtgccacgttgccttgccatcgtaccacgattctgcagaaaacctaa 38889776  T
Q  160 tttgaagttaaatctcacat 179  Q
    ||| ||||||| ||||||||    
T  38889775 ttttaagttaactctcacat 38889756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 29 - 178
Target Start/End: Complemental strand, 5886133 - 5885983
Alignment:
Q  29 ctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacg-ttgcct 127  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||| |||||||||||||| ||||      
T  5886133 ctgccagcgcaccatcgtaccacgatgcgaccccatcgtgccacgatttttccagtaccttgcctaaaaaactaaaacatccatcgtgccacgtttgcgc 5886034  T
Q  128 tgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    | | |||||||||||||| || | ||| || |||| ||||||| |||||||    
T  5886033 ttcaatcgtgccacgattctgtaaaaacctaattttaagttaactctcaca 5885983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 29 - 121
Target Start/End: Complemental strand, 25388746 - 25388654
Alignment:
Q  29 ctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacg 121  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||    
T  25388746 ctgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacg 25388654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 32264407 - 32264581
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| ||||||||| ||||||| ||||||| ||||||||||||||||| ||| | |||||||||||||||    ||||||| ||||||||||||||||||    
T  32264407 ccaaaaatatgtttctgttattcgctgccagcgcaccatcgtgccacgttgcaagcccatcgtgccacgaaaaatccagtgacttgcctcaaaaactgaa 32264506  T
Q  105 acctcc-atcgtgccacgttgccttgccatcgtgccacga-ttatgcataaatctgatttgaagttaaatctcacat 179  Q
    |||||| ||||||||||||| ||  ||||||||||||||| || |||| ||| ||||||| ||||||| ||||||||    
T  32264507 acctccaatcgtgccacgtt-cccagccatcgtgccacgatttctgca-aaacctgattttaagttaactctcacat 32264581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 61 - 178
Target Start/End: Complemental strand, 35777280 - 35777163
Alignment:
Q  61 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgat 160  Q
    ||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||  ||  ||||||||||||| |||| |||||| ||    
T  35777280 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagctgtcgtgccacgattctgcagaaatctaat 35777181  T
Q  161 ttgaagttaaatctcaca 178  Q
    || ||||||| |||||||    
T  35777180 tttaagttaactctcaca 35777163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 1321329 - 1321194
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    ||||||||| |||| || ||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||  |||||||||    
T  1321329 aatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgaccccatcgtgccacgattttttcagtgctttgcctc-aaacttgaaacctc 1321231  T
Q  110 -catcgtgccacgttgccttgccatcgtgccacgatt 145  Q
      ||||||||||||||||  || ||||||||||||||    
T  1321230 taatcgtgccacgttgcccagcaatcgtgccacgatt 1321194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 5522984 - 5523119
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    ||||||||| |||| || ||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| |||||||||||| |    
T  5522984 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgatcccattgtgccacgatttttccagtaccttgcctc-aaaactgaaaccac 5523082  T
Q  110 c-atcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    | ||||||||| ||||||  || ||| ||||||||||    
T  5523083 caatcgtgccatgttgcccagcaatcttgccacgatt 5523119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 11163008 - 11162924
Alignment:
Q  61 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||    
T  11163008 ccatcgtgccacaatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgcccagcaatcgtgccacgatt 11162924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 26720436 - 26720301
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    ||||||||| |||| || ||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||  |||||||||    
T  26720436 aatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgctttgcctc-aaacttgaaacctc 26720338  T
Q  110 c-atcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    | ||| |||||||||||   |||||||||||||||||    
T  26720337 caatcctgccacgttgctcagccatcgtgccacgatt 26720301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 10958692 - 10958767
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 85  Q
    |||| |||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10958692 aatacgtttctgttattggctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 10958767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 11170260 - 11170178
Alignment:
Q  63 atcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  || | ||||||||||||    
T  11170260 atcgagccacgatttttccagtgccttgcctcaaaaaccgaaacctccatcgtgccacgttgcccagcaaccgtgccacgatt 11170178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 61 - 178
Target Start/End: Original strand, 6719532 - 6719651
Alignment:
Q  61 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc---atcgtgccacgttgccttgccatcgtgccacgattatgcataaatct 157  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||    ||||||||||| |||| | | ||||||||||||||| ||| ||| ||    
T  6719532 ccatcgtgccacgatttttccagtgcattgcct-aaaaactgaaacctctccaatcgtgccacgatgcccttcaatcgtgccacgattaagcagaaacct 6719630  T
Q  158 gatttgaagttaaatctcaca 178  Q
    ||||| ||||||| |||||||    
T  6719631 gattttaagttaattctcaca 6719651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 7606880 - 7606963
Alignment:
Q  95 aaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    ||||||||||||||||||||||||||||||||  ||||||||| ||||||| |||| ||| ||||||| ||||||| |||||||    
T  7606880 aaaaactgaaacctccatcgtgccacgttgcccagccatcgtgtcacgattctgcagaaacctgattttaagttaactctcaca 7606963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 24177167 - 24177032
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    |||| ||||||||| || ||  ||| ||||||||||||||||  ||||| |||||||||||||  ||||||||||| ||||| || | |||||||||  |    
T  24177167 aatacgtttatgtttttcgcctccaacgcaccatcgtgccacattgcgatcccatcgtgccacattttttccagtgacttgcttc-agaactgaaacaac 24177069  T
Q  110 c-atcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    | |||||||||||||||| ||| | ||||||||||||    
T  24177068 caatcgtgccacgttgccctgcaaacgtgccacgatt 24177032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 3859421 - 3859350
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatt 76  Q
    |||| |||| |||||| ||||| || |||| |||||||||||||||||||| ||||||||||||||||||||    
T  3859421 ccaaaaatacgtttatattattcgccgccagcgcaccatcgtgccacgatgtgaccccatcgtgccacgatt 3859350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 6066195 - 6066254
Alignment:
Q  61 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccac 120  Q
    ||||||||||||||| ||||||||||||||||  ||||||| ||||||||||||||||||    
T  6066195 ccatcgtgccacgatgtttccagtgccttgcccaaaaaactaaaacctccatcgtgccac 6066254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 45882832 - 45882752
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 85  Q
    |||| |||| |||| ||||||| | || || ||||||||||||||||| ||| | ||||||||| ||||||||||||||||    
T  45882832 ccaaaaataggtttctgttattcgttgtcagcgcaccatcgtgccacgttgcaatcccatcgtggcacgatttttccagtg 45882752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 3859365 - 3859315
Alignment:
Q  130 ccatcgtgccacgattatgcataaatctgatttgaagttaaatctcacatt 180  Q
    ||||||||||||||||||||| ||| ||||||| ||||||| |||||||||    
T  3859365 ccatcgtgccacgattatgcagaaacctgattttaagttaactctcacatt 3859315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 35777314 - 35777266
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgat 54  Q
    |||| |||||||||||||| |||||||||| |||||||||||||||||||    
T  35777314 ccaaaaatatgtttatgtt-tttgctgccagcgcaccatcgtgccacgat 35777266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 4308676 - 4308725
Alignment:
Q  36 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 85  Q
    |||||||||||| |||||| ||| || |||||| ||||||||||||||||    
T  4308676 cgcaccatcgtggcacgattcgatccaatcgtggcacgatttttccagtg 4308725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 6719497 - 6719546
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgat 54  Q
    |||| ||||||||| ||||||| || |||| |||||||||||||||||||    
T  6719497 ccaaaaatatgtttctgttattcgccgccagcgcaccatcgtgccacgat 6719546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 10084762 - 10084807
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatg 55  Q
    ||||||||| |||| || ||||||| ||||||||||||||||||||    
T  10084762 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatg 10084807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 10191682 - 10191727
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatg 55  Q
    ||||||||| |||| || ||||||| ||||||||||||||||||||    
T  10191682 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatg 10191727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 38889910 - 38889861
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgat 54  Q
    |||| ||||||||| ||||||| || |||| |||||||||||||||||||    
T  38889910 ccaaaaatatgtttctgttattcgccgccagcgcaccatcgtgccacgat 38889861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 12907 - 13054
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||     
T  12907 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgccttga 13006  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    ||||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  13007 catcgtgccacgattctgcagaaacctgattttaagttaactctcaca 13054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 9e-52; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 10 - 178
Target Start/End: Original strand, 14507546 - 14507716
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaa--actgaaacc 107  Q
    ||||||||| |||| || |||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||  |||||||||    
T  14507546 aatatgtttctgtttttcgctggcagcgcaccatcgtgccacgatgcgaccccatcgtgccaccatttttccagtgccttgtatcaaaaaaactgaaacc 14507645  T
Q  108 tccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    |||||||||||||||||||  ||||||||||||||||| |||| ||||||||||| ||||||| |||||||    
T  14507646 tccatcgtgccacgttgcccagccatcgtgccacgattctgcagaaatctgattttaagttaactctcaca 14507716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 19227780 - 19227915
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    ||||||||| ||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19227780 aatatgtttctgttattcgccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaattgaaacctc 19227879  T
Q  110 catcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    |||| ||||||||||||   ||||||||||||||||    
T  19227880 catcatgccacgttgcccaaccatcgtgccacgatt 19227915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 26068735 - 26068882
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||| ||||||||||||||||    
T  26068735 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcatgccacgttgccttgc 26068834  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  26068835 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 26068882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 8995423 - 8995288
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    |||| |||| |||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8995423 aatacgtttctgttatttgctgtcagcgcaccatcgtgccacgatgtgaccccatcgtgccacgatttttccagtgccttgcc-caaaaactgaaacctc 8995325  T
Q  110 c-atcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    | ||||||||||||||||  |||||||||||||||||    
T  8995324 caatcgtgccacgttgcccagccatcgtgccacgatt 8995288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 9019870 - 9019735
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    |||| |||| |||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9019870 aatacgtttctgttatttgctgtcagcgcaccatcgtgccacgatgtgaccccatcgtgccacgatttttccagtgccttgcc-caaaaactgaaacctc 9019772  T
Q  110 c-atcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    | ||||||||||||||||  |||||||||||||||||    
T  9019771 caatcgtgccacgttgcccagccatcgtgccacgatt 9019735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 26066464 - 26066611
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||  || |||| ||||||||||||||||||||||||||||    
T  26066464 gccagcgcaccattgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaataactaaaacctccatcgtgccacgttgccttgc 26066563  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    | ||||||||||||| | || ||| ||||||| ||||||| |||||||    
T  26066564 cgtcgtgccacgattctacagaaacctgattttaagttaactctcaca 26066611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 33308832 - 33308685
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||  |||  ||    
T  33308832 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgaagcccagc 33308733  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  33308732 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 33308685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 33311101 - 33310954
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||  |||  ||    
T  33311101 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgaagcccagc 33311002  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  33311001 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 33310954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 29755132 - 29755279
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  29755132 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 29755231  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  29755232 cgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 29755279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 11983400 - 11983558
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    ||||||||| |||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| | ||||||||||||    
T  11983400 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg-cttacctc-acaactgaaacctc 11983497  T
Q  110 catcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaa 170  Q
    |||||| ||| ||||||   ||||||| |||||||| |||| ||| ||||||| |||||||    
T  11983498 catcgtaccatgttgcccaaccatcgtaccacgattctgcagaaacctgattttaagttaa 11983558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 4816639 - 4816749
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    ||||||||| |||| |||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  4816639 aatatgtttctgtt-tttgctaccagcacaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtaccttgcctc-aaaactgaaacctc 4816736  T
Q  110 c-atcgtgccacg 121  Q
    | |||||||||||    
T  4816737 caatcgtgccacg 4816749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 15530512 - 15530628
Alignment:
Q  29 ctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgcct 127  Q
    |||||| | |||||||||||||||||||| ||||||||| |||||| ||||| ||||| ||||||| |||  |||||||||| || |||||||||| ||     
T  15530512 ctgccagcacaccatcgtgccacgatgcggccccatcgtaccacgaattttcgagtgctttgcctc-aaacttgaaacctccaattgtgccacgttaccc 15530610  T
Q  128 tgccatcgtgccacgatt 145  Q
     |||||||||||||||||    
T  15530611 agccatcgtgccacgatt 15530628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 30729194 - 30729284
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctca 95  Q
    |||| |||| |||| ||||||| ||||||| ||||| ||||||||||| || |||||||||||| |||||  ||||||||| |||||||||    
T  30729194 ccaaaaatacgtttctgttattcgctgccagcgcactatcgtgccacgttgtgaccccatcgtggcacgaaatttccagtgacttgcctca 30729284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 26084867 - 26084818
Alignment:
Q  36 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 85  Q
    |||||||||||||||||||||||  | |||||| ||||||||||||||||    
T  26084867 cgcaccatcgtgccacgatgcgattcaatcgtggcacgatttttccagtg 26084818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 32279910 - 32279845
Alignment:
Q  61 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgcc 126  Q
    |||||||||||||| |||||||| | |||||||| | ||||||||| ||| ||||||||||||||||    
T  32279910 ccatcgtgccacgacttttccagcgacttgcctc-agaactgaaacatccaatcgtgccacgttgcc 32279845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 15541511 - 15541596
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctca 95  Q
    ||||||||| || |||| ||||||| || |||||||||||||| ||||| | ||||||| || ||  ||||||||| | |||||||    
T  15541511 aatatgtttctgctattcgctgccagcgtaccatcgtgccacgttgcgatctcatcgtggcatgaaatttccagtgacgtgcctca 15541596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 9e-52; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 34477485 - 34477632
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||  ||    
T  34477485 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctaaaaaactaaaacctccatcgtgccacgttgcccagc 34477584  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    ||||||||||||||| |||| |||  |||||| ||||||| |||||||    
T  34477585 catcgtgccacgattctgcagaaacttgattttaagttaactctcaca 34477632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 38882018 - 38881878
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| |||| |||| ||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  38882018 ccaaaaatacgtttctgttattcgccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactaaa 38881919  T
Q  105 acctccatcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    ||||||||||||||||||||||  || ||||||||||||||    
T  38881918 acctccatcgtgccacgttgcccagcaatcgtgccacgatt 38881878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 61 - 178
Target Start/End: Complemental strand, 2174797 - 2174680
Alignment:
Q  61 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgat 160  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||    
T  2174797 ccatcgtgccacgatttttccagtgccttgcctaaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 2174698  T
Q  161 ttgaagttaaatctcaca 178  Q
    || ||||||| |||||||    
T  2174697 tttaagttaactctcaca 2174680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 31544971 - 31544798
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| ||||||||| |||| ||  | |||| |||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||  ||||||| ||    
T  31544971 ccaaaaatatgtttctgtttttatccgccagcgcaccatcgtgtctcgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaa 31544872  T
Q  105 acctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    ||||||||||||||||||||||  || |||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  31544871 acctccatcgtgccacgttgcccagctatcgtgccacgattttgcagaaacctgattttaagttaactctcaca 31544798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 10749652 - 10749505
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  10749652 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 10749553  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  10749552 cgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 10749505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 29 - 170
Target Start/End: Complemental strand, 4236519 - 4236378
Alignment:
Q  29 ctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgcct 127  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||     
T  4236519 ctgccagcgcaccatcgtgccacgatgcgatcccattgtgccacgatttttccagtgccttgcct-taaaactgaaacctccaatcgtgccacgttgccc 4236421  T
Q  128 tgccatcgtgccacgattatgcataaatctgatttgaagttaa 170  Q
     ||||||||||||| ||| |||| ||||||||||| |||||||    
T  4236420 agccatcgtgccacaattctgcagaaatctgattttaagttaa 4236378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 31542615 - 31542442
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| ||||||||| |||| ||  | |||| |||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||  ||||||| ||    
T  31542615 ccaaaaatatgtttctgtttttatccgccagcgcaccatcgtgtctcgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaa 31542516  T
Q  105 acctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    ||||||||||||||||||||||  || |||||| ||||||| |||| ||| ||||||| ||||||| |||||||    
T  31542515 acctccatcgtgccacgttgcccagctatcgtgtcacgattttgcagaaacctgattttaagttaactctcaca 31542442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 10757107 - 10756960
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  10757107 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 10757008  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    | |||||| |||||| |||| ||| ||||||| ||||||| |||||||    
T  10757007 cgtcgtgctacgattgtgcagaaacctgattttaagttaactctcaca 10756960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 15354918 - 15355065
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  15354918 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 15355017  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
      ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  15355018 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 15355065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 15357194 - 15357341
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  15357194 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 15357293  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
      ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  15357294 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 15357341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 61 - 178
Target Start/End: Original strand, 34479855 - 34479972
Alignment:
Q  61 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgat 160  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||  ||||||||||||||||| |||| ||| |||||    
T  34479855 ccatcgtgccacgatttttccagtgccttgcctaaaaaactaaaacctccatcgtgccacgttgcccagccatcgtgccacgattctgcagaaacctgat 34479954  T
Q  161 ttgaagttaaatctcaca 178  Q
    || ||||||| |||||||    
T  34479955 tttaagttaactctcaca 34479972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 61 - 178
Target Start/End: Complemental strand, 39797966 - 39797849
Alignment:
Q  61 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgat 160  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||| ||| |||||    
T  39797966 ccatcgtgccatgatttttccggtgccttgcctcaaaaactgaaacctccatcatgccacgttgcccagccatcgtgccacgattatgcagaaacctgat 39797867  T
Q  161 ttgaagttaaatctcaca 178  Q
    || ||||||| |||||||    
T  39797866 tttaagttaactctcaca 39797849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 16776065 - 16775930
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    ||||||||| |||| || | ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||  |||||||||    
T  16776065 aatatgtttctgtttttcgatgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgattttttcagtgctttgcctc-aaacttgaaacctc 16775967  T
Q  110 c-atcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    | |||||| ||||||||||||||||||||||||||||    
T  16775966 caatcgtgtcacgttgccttgccatcgtgccacgatt 16775930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 61 - 179
Target Start/End: Original strand, 25921874 - 25921993
Alignment:
Q  61 ccatcgtgccacgatttttccagtgccttgcctcaaaa-actgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctga 159  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |   |||||||||||||||| |||| ||| ||||    
T  25921874 ccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctccatcgtgccacgttgtccaaccatcgtgccacgattctgcagaaacctga 25921973  T
Q  160 tttgaagttaaatctcacat 179  Q
    ||| ||||||| ||||||||    
T  25921974 ttttaagttaactctcacat 25921993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 31 - 179
Target Start/End: Complemental strand, 23664981 - 23664833
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||  ||||| | ||| |||||||||||| ||  |||  ||    
T  23664981 gccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgcctttcccaaaaaaataaaaactccatcgtgccgcgaagcccagc 23664882  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcacat 179  Q
      ||||||||||||| |||| ||| ||||||| ||||||| ||||||||    
T  23664881 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacat 23664833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 31 - 179
Target Start/End: Original strand, 23793606 - 23793754
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||  ||||| | ||| |||||||||||| ||  |||  ||    
T  23793606 gccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgcctttcccaaaaaaataaaaactccatcgtgccgcgaagcccagc 23793705  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcacat 179  Q
      ||||||||||||| |||| ||| ||||||| ||||||| ||||||||    
T  23793706 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacat 23793754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 23667256 - 23667109
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||  ||||| | ||| |||||||||||| ||  |||  ||    
T  23667256 gccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgcctttcccaaaaaaataaaaactccatcgtgccgcgaagcccagc 23667157  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
      ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  23667156 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 23667109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 31179807 - 31179897
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacg 121  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||  ||||||| |||||||||||||||||||    
T  31179807 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgtcttgcccaaaaaactaaaacctccatcgtgccacg 31179897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 21684832 - 21684909
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcc 87  Q
    ||||||||| |||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21684832 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcc 21684909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 659829 - 659746
Alignment:
Q  61 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    ||||||||||||||||||||||||| ||||||||  |||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  659829 ccatcgtgccacgatttttccagtgacttgcctc--aaactgaaacctccaatcgtgccacgttgcctagccatcgtgccacgatt 659746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 61 - 178
Target Start/End: Original strand, 38960487 - 38960604
Alignment:
Q  61 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgat 160  Q
    ||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| |   |||  ||| ||||||||||||| |||| ||| |||||    
T  38960487 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcaaagcccagccgtcgtgccacgattgtgcagaaacctgat 38960586  T
Q  161 ttgaagttaaatctcaca 178  Q
    || ||||||| |||||||    
T  38960587 tttaagttaactctcaca 38960604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 21947940 - 21947803
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| ||||||||| ||||||| ||||||||   |||||||||||||| ||| | ||||||||||||||     ||||||| ||| |||||||| |||||    
T  21947940 ccaaaaatatgtttctgttattcgctgccac---accatcgtgccacgttgcaatcccatcgtgccacgtaaagtccagtgacttacctcaaaa-ctgaa 21947845  T
Q  105 acctcca-tcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    ||||||| ||||| |||||||||| |||||||||||||||||    
T  21947844 acctccaatcgtgtcacgttgcctagccatcgtgccacgatt 21947803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 659850 - 659929
Alignment:
Q  43 tcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgtt 123  Q
    ||||||||| |||||||| |||||||||||||||||||||||| ||||||||  |||||||||||||| |||||||||||||    
T  659850 tcgtgccacaatgcgacctcatcgtgccacgatttttccagtgacttgcctc--aaactgaaacctccaatcgtgccacgtt 659929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 180
Target Start/End: Original strand, 18186489 - 18186589
Alignment:
Q  80 ccagtgccttgcctcaaaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    |||||| |||||||||||| |||||||||||| |||||||||||||||  |||||||| |||||||| |||| |||  |||||| ||||||| |||||||    
T  18186489 ccagtgacttgcctcaaaa-ctgaaacctccaatcgtgccacgttgcccagccatcgtaccacgattctgcagaaacttgattttaagttaactctcaca 18186587  T
Q  179 tt 180  Q
    ||    
T  18186588 tt 18186589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 61 - 178
Target Start/End: Original strand, 31466379 - 31466496
Alignment:
Q  61 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc-catcgtgccacgttgccttgccatcgtgccacgatt-atgcataaatctg 158  Q
    ||||||||||| ||||||||||||| |||||||| | ||||||||| || ||||||||||||||||| | | ||||||||||||||  |||| ||| |||    
T  31466379 ccatcgtgccaagatttttccagtgacttgcctc-ataactgaaacatctcatcgtgccacgttgcccttcaatcgtgccacgattcctgca-aaacctg 31466476  T
Q  159 atttgaagttaaatctcaca 178  Q
    |||| ||||||| |||||||    
T  31466477 attttaagttaactctcaca 31466496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 2818729 - 2818813
Alignment:
Q  61 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    ||||||||||||||    ||||||| |||||||||||| |||||||||||| |||||||| ||||||| |||||||||||||||||    
T  2818729 ccatcgtgccacgaaaaatccagtgacttgcctcaaaa-ctgaaacctccaatcgtgccatgttgcctagccatcgtgccacgatt 2818813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 20507828 - 20507968
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| ||||||||| ||||||| ||||| | |||||| |||||||| | ||| | |||||||||||||||    |||| || |||||||| |||||| ||    
T  20507828 ccaaaaatatgtttctgttattcgctgctagcgcaccttcgtgccatgttgcaatcccatcgtgccacgaaaaatccaatgacttgcctc-aaaactaaa 20507926  T
Q  105 acctcc-atcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    |||||| ||||||| ||||||||   | ||||||||||||||    
T  20507927 acctccaatcgtgctacgttgcccaactatcgtgccacgatt 20507968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 20504316 - 20504419
Alignment:
Q  42 atcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgcca 140  Q
    ||||||||||| ||| | |||||||||||||||    |||| || |||||||||||| || ||||||||| |||||||||||||||  || |||||||||    
T  20504316 atcgtgccacgttgcaatcccatcgtgccacgaaaaatccattgacttgcctcaaaa-ctaaaacctccaatcgtgccacgttgcccagctatcgtgcca 20504414  T
Q  141 cgatt 145  Q
    |||||    
T  20504415 cgatt 20504419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 21684905 - 21684969
Alignment:
Q  114 gtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    |||||||||||||  ||||||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  21684905 gtgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 21684969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 178
Target Start/End: Original strand, 36402747 - 36402845
Alignment:
Q  80 ccagtgccttgcctcaaaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    |||||| |||||||||||| |||||||||||| |||||| | ||||||  |||||||||||  |||| |||| ||| || |||| ||||||| |||||||    
T  36402747 ccagtgacttgcctcaaaa-ctgaaacctccaatcgtgctatgttgcccagccatcgtgcctagattctgcagaaacctaattttaagttaactctcaca 36402845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 39798001 - 39797956
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgcca 50  Q
    |||| ||||||||| ||||||| ||||||| |||||||||||||||    
T  39798001 ccaaaaatatgtttctgttattcgctgccagcgcaccatcgtgcca 39797956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 39854366 - 39854317
Alignment:
Q  36 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 85  Q
    |||||||||||||||||||||||  | | |||| ||||||||||||||||    
T  39854366 cgcaccatcgtgccacgatgcgattcaaccgtgacacgatttttccagtg 39854317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 42238096 - 42238047
Alignment:
Q  36 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 85  Q
    ||||||||||||||||| |||||   ||||||| ||||||||||||||||    
T  42238096 cgcaccatcgtgccacgttgcgatttcatcgtggcacgatttttccagtg 42238047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 1240219 - 1240171
Alignment:
Q  37 gcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 85  Q
    ||||||||||| |||||| ||| || |||||| ||||||||||||||||    
T  1240219 gcaccatcgtggcacgattcgatccaatcgtggcacgatttttccagtg 1240171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 4409946 - 4409890
Alignment:
Q  29 ctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 85  Q
    |||||| |||||||||||| |||||| ||| || || ||| ||||||||||||||||    
T  4409946 ctgccatcgcaccatcgtggcacgattcgatccaattgtggcacgatttttccagtg 4409890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 12556325 - 12556408
Alignment:
Q  62 catcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    |||||||||||||    ||||||| |||||||| ||||||||||||||| || |||||||||||||  |||||  ||||||||||    
T  12556325 catcgtgccacgaaaaatccagtgacttgcctc-aaaactgaaacctccaattgtgccacgttgcccagccattatgccacgatt 12556408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 31179885 - 31179933
Alignment:
Q  130 ccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    |||||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  31179885 ccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 31179933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 18812815 - 18812668
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||  ||    
T  18812815 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctaaaaaactaaaacctccatcgtgccacgttgcccagc 18812716  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    | ||||||||||||| | || ||| ||||||| ||||||| |||||||    
T  18812715 cgtcgtgccacgattcttcagaaacctgattttaagttaactctcaca 18812668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 43079494 - 43079347
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||    
T  43079494 gccagcgcaccatcgtgccacgatgagaccccatcgtaccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgccttgc 43079395  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  43079394 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 43079347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 39 - 178
Target Start/End: Complemental strand, 43081861 - 43081722
Alignment:
Q  39 accatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgc 138  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||| |||||||||| ||||||    
T  43081861 accatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccactttgccttgccgtcgtgc 43081762  T
Q  139 cacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    ||||||| |||| ||| ||||||| ||||||| |||||||    
T  43081761 cacgattctgcagaaacctgattttaagttaactctcaca 43081722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 27826950 - 27826815
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    ||||||||| |||| || ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||||    
T  27826950 aatatgtttttgtttttcgctgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgctttgcttcaaaaaatgaaacctc 27826851  T
Q  110 catcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    |||||||||||||||||  || ||||||||||||||    
T  27826850 catcgtgccacgttgcccagcaatcgtgccacgatt 27826815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 27829261 - 27829126
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    ||||||||| |||| || ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||| |||||||||    
T  27829261 aatatgtttttgtttttcgctgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgttttgcctcaaaaaatgaaacctc 27829162  T
Q  110 catcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    |||||||||||||||||  || ||||||||||||||    
T  27829161 catcgtgccacgttgcccagcaatcgtgccacgatt 27829126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 12517397 - 12517532
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    ||||||||| |||| || ||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||| ||||||||||||||    
T  12517397 aatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtacattgcctc-aaaactgaaacctc 12517495  T
Q  110 c-atcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    | |||||||||||||||||||||||||||||||||||    
T  12517496 caatcgtgccacgttgccttgccatcgtgccacgatt 12517532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 18810630 - 18810483
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||| |||||||||||||| | |||||||||||||||||||| ||||| | ||||||||||||||||||||||||  ||    
T  18810630 gccagcgcaccatcgtgccacgatgtgaccccatcgtgccgcaatttttccagtgccttgcctaaaaaaataaaacctccatcgtgccacgttgcccagc 18810531  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  18810530 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 18810483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 44720790 - 44720617
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| ||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  44720790 ccaaaaatatgtttctgtt-tttgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtaccttgcctc-aaaactgaa 44720693  T
Q  105 acctcc-atcgtgccacgttgccttgccatcgtgccacgattatgca-taaatctgatttgaagttaaatctcaca 178  Q
    |||||| | ||||||||  ||||  || ||| |||||||||| ||||  ||| ||||||| ||||||| |||||||    
T  44720692 acctccaaacgtgccacaatgcccagcaatcatgccacgattctgcagaaaacctgattttaagttaactctcaca 44720617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 14807716 - 14807556
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    |||| ||||||||| || ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||  |||||||||    
T  14807716 aatacgtttatgtttttcgctgccagcgcaccaccgtgccacgatgcgaccccatcgtgccacgatttttccagtgctttgcctc-aaacttgaaacctc 14807618  T
Q  110 c-atcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaa 170  Q
    | |||||| |||||||||   ||||| |||||||||| |||| ||| ||||||| |||||||    
T  14807617 caatcgtgtcacgttgcccaaccatcatgccacgattctgcagaaacctgattttaagttaa 14807556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 15067950 - 15067785
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| |||| |||| ||||||| ||||||| ||||||||||||||||| ||||| ||||||||| || ||||||||||||| ||||| || |||||||||    
T  15067950 ccaaaaatacgtttttgttattcgctgccagcgcaccatcgtgccacgttgcgatcccatcgtggcatgatttttccagtggcttgcttc-aaaactgaa 15067852  T
Q  105 acctcc-atcgtgccacgttgccttgccatcgtgccacgatt-atgcataaatctgatttgaagttaa 170  Q
    |||||| ||||||||| ||||||  |||||| ||||||||||  |||| ||||||||||| |||||||    
T  15067851 acctccaatcgtgccatgttgcccagccatcttgccacgattcctgca-aaatctgattttaagttaa 15067785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 40 - 145
Target Start/End: Original strand, 28251988 - 28252093
Alignment:
Q  40 ccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgc 138  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||  |||||||||| ||||| ||||||||||| ||||||||||    
T  28251988 ccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgctttgcctc-aaacttgaaacctccaatcgtaccacgttgcctagccatcgtgc 28252086  T
Q  139 cacgatt 145  Q
    |||||||    
T  28252087 cacgatt 28252093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 15072679 - 15072506
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| |||| |||| ||||||| ||||||| ||||||||| ||||||| ||||| ||||||||| ||||||||||| |||| ||||| || |||||||||    
T  15072679 ccaaaaatacgtttctgttattcgctgccagcgcaccatcatgccacgttgcgatcccatcgtgacacgatttttctagtggcttgcttc-aaaactgaa 15072581  T
Q  105 acctcc-atcgtgccacgttgccttgccatcgtgccacgatt-atgcataaatctgatttgaagttaaatctcaca 178  Q
    |||||| |||||| |||||||||  ||||||||| |||||||  ||||  |||||||||| ||||||| |||||||    
T  15072580 acctccaatcgtgtcacgttgcccagccatcgtgtcacgattcctgca-gaatctgattttaagttaactctcaca 15072506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 61 - 150
Target Start/End: Original strand, 3886322 - 3886412
Alignment:
Q  61 ccatcgtgccacgatttttccagtgccttgcctcaaaa-actgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgca 150  Q
    ||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |  |||||| || ||||||| ||||    
T  3886322 ccatcgtaccacgatttttccagtgtcttgcctcaaaaaactgaaacctccatcgtgccacgttgtccagccatcatgtcacgattctgca 3886412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 4423952 - 4423868
Alignment:
Q  61 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||| || |||||||||||||  || || |||||||||||    
T  4423952 ccatcgtgccacgatttttccagtgccttgcct-taaaactgaaacctccaattgtgccacgttgcccagcaattgtgccacgatt 4423868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 28251937 - 28252002
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgat 75  Q
    |||| |||| |||| || ||||||| ||||||||||| ||||||||||| ||||||||||||||||    
T  28251937 aatacgtttctgtttttcgctgccaacgcaccatcgtaccacgatgcgatcccatcgtgccacgat 28252002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 178
Target Start/End: Complemental strand, 3878490 - 3878322
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    |||| |||| ||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||  |||||||||    
T  3878490 aatacgtttctgttattcgctgccagcgtaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgctttgcctc-aaacttgaaacctc 3878392  T
Q  110 c-atcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    | ||||||||||||||||  ||||||||||||||||| |||| ||||||||||| ||||||| |||||||    
T  3878391 caatcgtgccacgttgcccagccatcgtgccacgattctgcagaaatctgattttaagttaactctcaca 3878322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 1047356 - 1047503
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||  ||    
T  1047356 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagc 1047455  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  1047456 cgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 1047503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 2935217 - 2935070
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  2935217 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 2935118  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  2935117 cgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 2935070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 9027540 - 9027687
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  9027540 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 9027639  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  9027640 cgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 9027687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 22137025 - 22136878
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  22137025 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 22136926  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
      ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  22136925 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 22136878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 27306595 - 27306768
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| |||| |||| ||||||| ||||| | |||||||||||||||||| |||||||||||||||||||||||||||| || |||||||| |||||||||    
T  27306595 ccaaaaatacgtttctgttattcgctgctagcgcaccatcgtgccacgaagcgaccccatcgtgccacgatttttccaatgacttgcctc-aaaactgaa 27306693  T
Q  105 acctcc-atcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcacat 179  Q
    |||||| |||||||||||||| |  ||||||||||||||||| |||| ||| || |||| ||||||| ||||||||    
T  27306694 acctccaatcgtgccacgttgtccagccatcgtgccacgattttgca-aaaccttattttaagttaactctcacat 27306768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 40552052 - 40551905
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  40552052 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 40551953  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
      ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  40551952 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 40551905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 22108014 - 22107867
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||| ||||||||| ||  |||  ||    
T  22108014 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctgcatcgtgccgcgaagcccagc 22107915  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
      ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  22107914 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 22107867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 40549774 - 40549627
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||| ||||||||| ||  |||  ||    
T  40549774 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctgcatcgtgccgcgaagcccagc 40549675  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
      ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  40549674 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 40549627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 35552 - 35412
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| |||| |||| || |||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||  ||||    
T  35552 ccaaaaatacgtttctgctatttgctgccagcgcacgatcgggccacgatgcgaccccatcgtgccacgatttttccagtgctttgcctc-aaacttgaa 35454  T
Q  105 acctcc-atcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    |||||| ||||||||||||||||| || ||||||||||||||    
T  35453 acctccaatcgtgccacgttgcctagcaatcgtgccacgatt 35412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 44487 - 44347
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||| || |||  ||||    
T  44487 ccaaaaatatgtttatgttatttgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccatgatttttccagtgctttgcgtc-aaacttgaa 44389  T
Q  105 acctcc-atcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    |||||| |||||||||| |||||  |  ||||||||||||||    
T  44388 acctccaatcgtgccacattgcccagaaatcgtgccacgatt 44347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 61 - 178
Target Start/End: Original strand, 40837144 - 40837261
Alignment:
Q  61 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgat 160  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |   |||||||||||||||| |||| ||| |||||    
T  40837144 ccatcgtgccacgatttttccagtgccttgcctaaaaaactgaaacctccatcgtgccacgttgtccgaccatcgtgccacgattctgcagaaacctgat 40837243  T
Q  161 ttgaagttaaatctcaca 178  Q
    || ||||||| |||||||    
T  40837244 tttaagttaactctcaca 40837261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 25542448 - 25542317
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    ||||||||| |||| || ||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||  ||||||||||||||    
T  25542448 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttcaagtgccttgcct-taaaactgaaacctc 25542350  T
Q  110 c-atcgtgccacgttgccttgccatcgtgccac 141  Q
    | ||||||||||||||||  || ||||||||||    
T  25542349 caatcgtgccacgttgcccagcaatcgtgccac 25542317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 61 - 178
Target Start/End: Complemental strand, 26804462 - 26804345
Alignment:
Q  61 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgccacgattatgcataaatctga 159  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||||||||  ||||||||||||||||| || | ||| ||||    
T  26804462 ccatcgtgccacgatttttccactgccttgcctc-aaaactgaaacctccaatcgtaccacgttgcccagccatcgtgccacgattctgtagaaacctga 26804364  T
Q  160 tttgaagttaaatctcaca 178  Q
    ||| ||||||| |||||||    
T  26804363 ttttaagttaactctcaca 26804345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 18567531 - 18567396
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    |||| |||| ||||||| | ||||| ||||||||||||||| | || ||||||||||||||||||    ||||||| |||||||| ||||||||||||||    
T  18567531 aatacgtttctgttattcgttgccagcgcaccatcgtgccaagttgtgaccccatcgtgccacgaaaaatccagtgacttgcctc-aaaactgaaacctc 18567433  T
Q  110 c-atcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    | |||||||||| |||||  || ||||||||||||||    
T  18567432 caatcgtgccactttgcccagctatcgtgccacgatt 18567396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 31435418 - 31435553
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    |||| |||| ||||||| | ||||| ||||||||||||||| | || ||||||||||||||||||    ||||||| |||||||| ||||||||||||||    
T  31435418 aatacgtttctgttattcgttgccagcgcaccatcgtgccaagttgtgaccccatcgtgccacgaaaaatccagtgacttgcctc-aaaactgaaacctc 31435516  T
Q  110 c-atcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    | |||||||||| |||||  || ||||||||||||||    
T  31435517 caatcgtgccactttgcccagctatcgtgccacgatt 31435553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 1049699 - 1049780
Alignment:
Q  64 tcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcc-atcgtgccacgttgccttgccatcgtgccacgatt 145  Q
    ||||||||||||||||||||| |||||| || ||||||||||||||| ||||||||||||||||  || ||||||||||||||    
T  1049699 tcgtgccacgatttttccagtaccttgcttc-aaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacgatt 1049780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 26804492 - 26804448
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgat 54  Q
    |||| |||| ||||||||||||||| |||||||||||||||||||    
T  26804492 aatacgtttctgttatttgctgccagcgcaccatcgtgccacgat 26804448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 40946216 - 40946167
Alignment:
Q  36 cgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtg 85  Q
    |||||||||||| |||||| ||| || |||||| ||||||||||||||||    
T  40946216 cgcaccatcgtggcacgattcgatccaatcgtgacacgatttttccagtg 40946167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 42006484 - 42006404
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgc 91  Q
    |||| ||||||||||||| || | || | |||||||||||||| | |||  ||||||||||||||||||| ||||| |||||    
T  42006484 aatacgtttatgttatttccttcaac-gtaccatcgtgccacgttacgattccatcgtgccacgattttttcagtgacttgc 42006404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 5 - 137
Target Start/End: Complemental strand, 2802 - 2670
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| |||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||    
T  2802 ccaaaaatacgtttatgttattcgctgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtaccttgcctc-aaaactgaa 2704  T
Q  105 acctcc-atcgtgccacgttgccttgccatcgtg 137  Q
    |||||| ||||||||||||||||| || ||||||    
T  2703 acctccaatcgtgccacgttgcctagcaatcgtg 2670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 22062 - 21915
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  22062 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 21963  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
      ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  21962 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 21915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 24337 - 24190
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||  |||  ||    
T  24337 gccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagc 24238  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
      ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  24237 tgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 24190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 69665 - 69825
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctc 109  Q
    ||||||||| |||| || ||||||| | ||||||||||| ||||||||| ||||| |||| |||||||||||||||| ||||||| |||  |||||||||    
T  69665 aatatgtttctgtttttcgctgccagcacaccatcgtgcaacgatgcgatcccattgtgctacgatttttccagtgctttgcctc-aaacttgaaacctc 69763  T
Q  110 c-atcgtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaa 170  Q
    | ||||||||||||||||| ||||||||||||||||| |||| ||||||||||| |||||||    
T  69764 caatcgtgccacgttgcctagccatcgtgccacgattctgcagaaatctgattttaagttaa 69825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 61 - 170
Target Start/End: Original strand, 73427 - 73536
Alignment:
Q  61 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgccacgattatgcataaatctga 159  Q
    |||||||||||| ||||||||||||| ||||||||||   ||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||    
T  73427 ccatcgtgccacaatttttccagtgctttgcctcaaact-tgaaacctccaatcgtgccacgttgcctagccatcgtgccacgattctgcataaatctga 73525  T
Q  160 tttgaagttaa 170  Q
    ||| |||||||    
T  73526 ttttaagttaa 73536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 6074 - 5927
Alignment:
Q  31 gccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgccttgc 130  Q
    |||| ||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||  |||  ||    
T  6074 gccagcgcaccatcgtgccatgatgagaccccatcatgccacgatttttccagtgccttgcctaaaaaactaaaacctccatcgtgccgcgaagcccagc 5975  T
Q  131 catcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    | ||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  5974 cgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 5927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 29078 - 29001
Alignment:
Q  10 aatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcc 87  Q
    ||||||||| |||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29078 aatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcc 29001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 29005 - 28941
Alignment:
Q  114 gtgccacgttgccttgccatcgtgccacgattatgcataaatctgatttgaagttaaatctcaca 178  Q
    |||||||||||||  ||||||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  29005 gtgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 28941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 5 - 177
Target Start/End: Complemental strand, 14941 - 14768
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactgaa 104  Q
    |||| ||||||||| ||||||| ||||||| |||||||||||| |||| || || |||||||||||||||  ||||||||| |||||||| | |||||||    
T  14941 ccaaaaatatgtttctgttattcgctgccagcgcaccatcgtgtcacgttgtgatcccatcgtgccacgaaatttccagtgacttgcctc-ataactgaa 14843  T
Q  105 acct-ccatcgtgccacgttgccttgccatcgtgccacgatt-atgcataaatctgatttgaagttaaatctcac 177  Q
    || | ||||||| |||||||||| | | ||||||||||||||  |||| ||  ||||||| ||||||| ||||||    
T  14842 acttcccatcgttccacgttgcccttcaatcgtgccacgattcctgcagaatcctgattttaagttaactctcac 14768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0339 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 3919 - 3872
Alignment:
Q  5 ccaagaatatgtttatgttatttgctgccaccgcaccatcgtgccacg 52  Q
    |||| |||| |||||||||||| ||||||| |||||||||||||||||    
T  3919 ccaaaaatacgtttatgttattcgctgccatcgcaccatcgtgccacg 3872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University