View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_110 (Length: 375)
Name: NF11453A_low_110
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_110 |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 33662660 - 33662295
Alignment:
| Q |
1 |
ggactatcatatccgcagaattgttgctttcattattcaaattaaggtagatatagttgtttaatgtgccccnnnnnnn--gagatagttgtttatcatt |
98 |
Q |
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| T |
33662660 |
ggactatcatatccgcagaattgttgctttcattattcaaattaaggtagatatagttgtttaatgtaccccaaaaaaaaagagatagttgtttatcatt |
33662561 |
T |
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| Q |
99 |
ttttaattaatgagttgtttaaactttaacttcaaacattttagcattttatcgttagaaattcatctcttatagataaattagtggagtgtccgagttt |
198 |
Q |
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| T |
33662560 |
ttttaattaatgagttgtttaaactttaacttcaaacattttagcattttatcgttagaaattcatctcttatagataaattagtggagtgtccgagttc |
33662461 |
T |
|
| Q |
199 |
aaacctcgactatacatattacaatgaattgtccctatcaattagttaatatcacatcgacgaatgtcgaattttattgacggcaaagaagttccggaaa |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33662460 |
aaacctcgactatacatattacaatgaattgtccctatcaattagttaatatcacatcgacgaatgtcgaattttattgacggcaaagaagttccggaaa |
33662361 |
T |
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| Q |
299 |
aaccatattcttttcttcctagaacaaattaaaatcacaaccatatgatactaaattcttattcat |
364 |
Q |
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| T |
33662360 |
aaccatattcttttcttcctagaacaaattaaaatcacaaccatatgatactaaattcttattcat |
33662295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 33672130 - 33672083
Alignment:
| Q |
17 |
agaattgttgctttcattattcaaattaaggtagatatagttgtttaa |
64 |
Q |
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||||||||| |||||||||||| | ||||||||||||||||||||||| |
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| T |
33672130 |
agaattgtttctttcattattccatttaaggtagatatagttgtttaa |
33672083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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