View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_115 (Length: 369)
Name: NF11453A_low_115
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_115 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 142 - 363
Target Start/End: Complemental strand, 47340506 - 47340278
Alignment:
| Q |
142 |
gtaaatacaacaacaagaactaagtcttattccactgtgtgtaaggtcggccacatgaattaaat-----------gttatgactttattgaaaataaat |
230 |
Q |
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| T |
47340506 |
gtaaatacaacaataagaactaagtcttattcccctgtgt--aaggtcggctacataaattaaattatgccataatgttatgactttattgaaaataa-t |
47340410 |
T |
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| Q |
231 |
agaataaaattaaacatattctaatcggttttggagtatctattagaatagctccaatactcgtcacagcgatcatgtaaattgaccaacataacactga |
330 |
Q |
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| T |
47340409 |
agaataaaattaaacatattctaatcagttttggagtatctattagaatagctccaatactcgtcacagcgatcatgtaaattgaccaacataacactga |
47340310 |
T |
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| Q |
331 |
atctgatgataaccaaggtgttaatacactaat |
363 |
Q |
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| T |
47340309 |
atctgatgataacc-aggtgttaatacactaat |
47340278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 47340626 - 47340567
Alignment:
| Q |
24 |
acaatatcagatagttttgcttggagggtattggtacccaacgaaactaaaaaataccaa |
83 |
Q |
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| T |
47340626 |
acaatgtcagatagttttgcttggagggtattggtacccaacaaaactcaaaaataccaa |
47340567 |
T |
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