View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_12 (Length: 538)
Name: NF11453A_low_12
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 106 - 330
Target Start/End: Complemental strand, 31134027 - 31133807
Alignment:
| Q |
106 |
gaaagtggcatggtggtgatagaaaggggatggagaatttagggttttggtggtggatggaactgagaggagaggcattcagcaaatgtttttgttttct |
205 |
Q |
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| T |
31134027 |
gaaagtggcatggtggtgatagaaaggggatggagaatttagggttttggtggtggatggaactgagaggagaggcattcagcaaatgtttttgttttct |
31133928 |
T |
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| Q |
206 |
aaactcacagtggtgtggaataagccaagttttgttttcacgaaatagaagaaggaagacaaggaatgattaaggaatcatgtatgtaactcgtaagtaa |
305 |
Q |
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| T |
31133927 |
aaactcacagtggtgtggaataagccaacttttgttttcacgaaatagaagaaggaagacaaggaatgattaaggaatca----tgtaactcataagtaa |
31133832 |
T |
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| Q |
306 |
atagtggattggagaatgtaatctc |
330 |
Q |
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| T |
31133831 |
atagtggattggagaatgtaatctc |
31133807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 369 - 504
Target Start/End: Complemental strand, 31133768 - 31133640
Alignment:
| Q |
369 |
agttgactatttcagacgtatatatgccgcctcctgaaaaagaaataaaaaagaaagaatggannnnnnnnnnnnngtttgtttgttgtctatttctttc |
468 |
Q |
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| T |
31133768 |
agttgactatttcagacgtatatatgcc---tcctgaaaaagaaataaaaaataaagaaaaaaaaaattat-----gtttgtttgttgtctatttgtttc |
31133677 |
T |
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| Q |
469 |
atagcgtag-gtgtgtttgatttcctgtttgcaatat |
504 |
Q |
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| T |
31133676 |
atagcgcagtgtgtgtttgatttcctgtttgcaatat |
31133640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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