View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_120 (Length: 366)

Name: NF11453A_low_120
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_120
NF11453A_low_120
[»] scaffold0128 (3 HSPs)
scaffold0128 (11-219)||(18871-19078)
scaffold0128 (220-345)||(18554-18679)
scaffold0128 (11-56)||(5618-5663)
[»] chr8 (4 HSPs)
chr8 (255-342)||(13580396-13580485)
chr8 (290-342)||(28376659-28376711)
chr8 (257-342)||(26835636-26835721)
chr8 (270-334)||(22930331-22930395)
[»] chr1 (3 HSPs)
chr1 (257-342)||(8246762-8246847)
chr1 (257-342)||(1240429-1240514)
chr1 (288-342)||(3265538-3265592)
[»] chr6 (3 HSPs)
chr6 (257-342)||(12174322-12174407)
chr6 (293-342)||(10668956-10669005)
chr6 (290-342)||(9815747-9815799)
[»] chr5 (1 HSPs)
chr5 (257-342)||(16570538-16570623)
[»] chr4 (4 HSPs)
chr4 (289-342)||(47059692-47059745)
chr4 (289-342)||(47082057-47082110)
chr4 (288-342)||(12167052-12167106)
chr4 (273-342)||(36071615-36071684)
[»] chr2 (2 HSPs)
chr2 (257-342)||(40876967-40877052)
chr2 (290-342)||(5163794-5163846)
[»] chr7 (3 HSPs)
chr7 (270-342)||(3940706-3940778)
chr7 (270-342)||(9429391-9429463)
chr7 (290-342)||(35812616-35812668)
[»] chr3 (1 HSPs)
chr3 (270-342)||(15670920-15670992)


Alignment Details
Target: scaffold0128 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 19078 - 18871
Alignment:
Q  11 acatcaagagagccattaatgccttaactagaacagatacgatggcaactataactataacaataattcagtatcagatttgcttcaaaccagattacaa 110  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19078 acatcaagagagccattaatgtcttaactagaacagatacgatggcaactataactataacaataattcagtgtcagatttgcttcaaaccagattacaa 18979  T
Q  111 tgcaatcatttgttatggtgcttaatctctgtcaggaccgtttttgctactcagttcaattccctccttctttgtatcatcaattcttggctttgcaggt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18978 tgcaatcatttgttatggtgcttaatctctgtcaggaccgtttttgatactcagttcaattccctccttctttg-atcatcaattcttggctttgcaggt 18880  T
Q  211 ttggttacc 219  Q
    |||||||||    
T  18879 ttggttacc 18871  T

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Target: scaffold0128; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 220 - 345
Target Start/End: Complemental strand, 18679 - 18554
Alignment:
Q  220 attatttcattatccacataattaataacttaacattaaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaa 319  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  18679 attatttcattatccacataattaataacttaacattaaatatttattttatagaattattcaaagcaagttaaaaagaaatacatgtatataccactaa 18580  T
Q  320 ctaataagtaaaaatattaatttcag 345  Q
    ||||||||||||||||||||||||||    
T  18579 ctaataagtaaaaatattaatttcag 18554  T

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Target: scaffold0128; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 5663 - 5618
Alignment:
Q  11 acatcaagagagccattaatgccttaactagaacagatacgatggc 56  Q
    |||||||||| | |||||||| |||||||||||||||||| |||||    
T  5663 acatcaagagggacattaatgtcttaactagaacagatactatggc 5618  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 255 - 342
Target Start/End: Original strand, 13580396 - 13580485
Alignment:
Q  255 ttaaatatatatttt--atagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 342  Q
    ||||| |||||||||  ||||||||| ||| ||| | ||||||||||||| || |||||| ||||||||| |||||||||||| ||||||    
T  13580396 ttaaaaatatattttcaatagaattaatcaaagcgaattaaaaagaaatatatttatataatactaactattaagtaaaaataataattt 13580485  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 28376711 - 28376659
Alignment:
Q  290 ttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 342  Q
    ||||||||||||| || |||||| ||||||||| |||||||||||| ||||||    
T  28376711 ttaaaaagaaatatatctatatagtactaactactaagtaaaaataataattt 28376659  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 342
Target Start/End: Original strand, 26835636 - 26835721
Alignment:
Q  257 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 342  Q
    |||||||| ||  ||||||||| | | || || ||||||||||||| || |||||  ||||||||| |||||||||||| ||||||    
T  26835636 aaatatattttcaatagaattaataaaagaaaattaaaaagaaatatatttatattgtactaactattaagtaaaaataataattt 26835721  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 334
Target Start/End: Complemental strand, 22930395 - 22930331
Alignment:
Q  270 atagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaat 334  Q
    ||||||||| ||| ||| | ||||||||| ||| || |||||| ||||||||| |||||||||||    
T  22930395 atagaattaatcaaagcgaattaaaaagatatatatctatatagtactaactattaagtaaaaat 22930331  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 342
Target Start/End: Original strand, 8246762 - 8246847
Alignment:
Q  257 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 342  Q
    |||||||| ||  ||||||||| ||| | ||| ||||||||||||| || |||||| ||||||||| |||||||||||| ||||||    
T  8246762 aaatatattttcaatagaattaatcaaatcaaattaaaaagaaatatatctatatagtactaactattaagtaaaaataataattt 8246847  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 342
Target Start/End: Complemental strand, 1240514 - 1240429
Alignment:
Q  257 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 342  Q
    |||||||| ||  ||||||||| ||| |||   ||||||||||||| || |||||| ||||||||| |||||||||||| ||||||    
T  1240514 aaatatattttcaatagaattaatcaaagcggattaaaaagaaatatatttatatagtactaactactaagtaaaaataataattt 1240429  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 342
Target Start/End: Original strand, 3265538 - 3265592
Alignment:
Q  288 agttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 342  Q
    ||||||||||||||| || ||| || ||||||||| |||||||||||| ||||||    
T  3265538 agttaaaaagaaatatatctatttaatactaactattaagtaaaaataataattt 3265592  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 342
Target Start/End: Complemental strand, 12174407 - 12174322
Alignment:
Q  257 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 342  Q
    |||||||| ||| ||| ||||| ||| | | | ||||||||||||| || |||||| ||||||||| |||||||||||| ||||||    
T  12174407 aaatatatttttaatataattaatcaaaacgaattaaaaagaaatatatctatatagtactaactactaagtaaaaataataattt 12174322  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 342
Target Start/End: Original strand, 10668956 - 10669005
Alignment:
Q  293 aaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 342  Q
    |||||| ||| || |||||| |||||||||||||||||||||| ||||||    
T  10668956 aaaagatatatatctatataatactaactaataagtaaaaataataattt 10669005  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 9815747 - 9815799
Alignment:
Q  290 ttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 342  Q
    ||||||||||||| || |||||| || |||||| |||||||||||| ||||||    
T  9815747 ttaaaaagaaatatatctatatagtattaactactaagtaaaaataataattt 9815799  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 342
Target Start/End: Original strand, 16570538 - 16570623
Alignment:
Q  257 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 342  Q
    |||||||| ||| ||||||||| ||| ||  | ||||||||||||| || |||||  ||| |||||||||||||||||| ||||||    
T  16570538 aaatatatttttaatagaattaatcaaagtgaattaaaaagaaatatatctatatggtaccaactaataagtaaaaataataattt 16570623  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 342
Target Start/End: Complemental strand, 47059745 - 47059692
Alignment:
Q  289 gttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 342  Q
    |||||||||||||| || | |||| |||||||||||||||||||||| ||||||    
T  47059745 gttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattt 47059692  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 342
Target Start/End: Original strand, 47082057 - 47082110
Alignment:
Q  289 gttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 342  Q
    |||||||||||||| || | |||| |||||||||||||||||||||| ||||||    
T  47082057 gttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattt 47082110  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 342
Target Start/End: Complemental strand, 12167106 - 12167052
Alignment:
Q  288 agttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 342  Q
    ||||||||| |||||||| ||||||||||||| || |||| ||||||| ||||||    
T  12167106 agttaaaaataaatacatatatatactactaattactaagcaaaaataataattt 12167052  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 342
Target Start/End: Original strand, 36071615 - 36071684
Alignment:
Q  273 gaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 342  Q
    |||||| ||| || || ||||||||||||| || |||||| |||||||||  ||||||||||| ||||||    
T  36071615 gaattaatcaaagaaaattaaaaagaaatatatctatatagtactaactatcaagtaaaaataataattt 36071684  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 342
Target Start/End: Original strand, 40876967 - 40877052
Alignment:
Q  257 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 342  Q
    |||||||| ||  ||||||||| ||  | ||||||||||||||||| || |||||| |||||||||  ||||||||||| ||||||    
T  40876967 aaatatattttcaatagaattaatccaaacaagttaaaaagaaatatatttatataatactaactaccaagtaaaaataataattt 40877052  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 5163846 - 5163794
Alignment:
Q  290 ttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 342  Q
    ||||||||| ||| || |||||| ||||||||| |||||||||||| ||||||    
T  5163846 ttaaaaagatatatatttatatagtactaactactaagtaaaaataataattt 5163794  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 3940706 - 3940778
Alignment:
Q  270 atagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 342  Q
    ||||||||| ||| || || ||||||||||||| || |||||  |||| |||| |||||||||||| ||||||    
T  3940706 atagaattaatcaaagtaaattaaaaagaaatatatctatattatacttactactaagtaaaaataataattt 3940778  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 9429391 - 9429463
Alignment:
Q  270 atagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 342  Q
    ||||||||| ||| | | || |||||||||||| || |||||| ||||||||| ||| |||||||| ||||||    
T  9429391 atagaattaatcaaaacgagataaaaagaaatatatttatataatactaactattaaataaaaatactaattt 9429463  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 35812668 - 35812616
Alignment:
Q  290 ttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 342  Q
    ||||||||||||| || |||||| |||||| || |||||||||||| ||||||    
T  35812668 ttaaaaagaaatatatctatatagtactaattattaagtaaaaataataattt 35812616  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 15670992 - 15670920
Alignment:
Q  270 atagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 342  Q
    ||||||||| ||| | ||| ||||||||||||| || |||||  || |||||| |||||||||||| ||||||    
T  15670992 atagaattaatcaaaacaaattaaaaagaaatatatctatattgtaataactactaagtaaaaataataattt 15670920  T

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