View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_121 (Length: 365)
Name: NF11453A_low_121
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_121 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 45622084 - 45622439
Alignment:
| Q |
1 |
ctcaacaaaaatttgttcttcaatttttgccttcattattgtaggggaggcgtggcctagatagtgagatagggaaccagggacatcgcgtcgcattctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45622084 |
ctcaacaaaaatttgttcttcaatttttgccttcattattgtaggggaggcgtggcctagatagtgagatagggaaccagggacatcgggtcgcattctt |
45622183 |
T |
|
| Q |
101 |
tttctagggtaatgtgcaacaggtaaaatacaaacaccaacttcagtgcttgcatgtcgggtttttatgtacaacacacttcagaaaggatttggtgacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45622184 |
tttctagggtaatgtgcaacaggtaaaatacaaacaccaacttcggtgcttgtaggtcgggtttttatgtacgacacacttcagaaaggatttggtgacc |
45622283 |
T |
|
| Q |
201 |
gatgattggaattcctagagaaatgttgtttcttttgagcaattaaatgttgttgttgacttttgtcatccacaaagaatggttccttaaacagttagtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45622284 |
gatgattggaattcctagagaaatgttgtttcttttgagcaattaaatgttgttgttgacttttgtcatccacaaagaatggttccttaaacagttagtg |
45622383 |
T |
|
| Q |
301 |
ctcataacaggtttcttaattagcttttcgttcacttttctttccttaatattctt |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |||||||| ||||| |
|
|
| T |
45622384 |
ctcataacaggtttcttaattagcttttcgctcacttttctatccttaattttctt |
45622439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 22603605 - 22603959
Alignment:
| Q |
1 |
ctcaacaaaaatttgttcttcaatttttgccttcattattgtaggggaggcgtggcctagatagtgagatagggaaccagggacatcgcgtcgcattctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
22603605 |
ctcaacaaaaatttgttcttcaatttt-gccttcattattgtaggggaggcgtggcctagatagtgagatagggaaccagggacatcgtgtcacattctt |
22603703 |
T |
|
| Q |
101 |
tttctagggtaatgtgcaacaggtaaaatacaaacaccaacttcagtgcttgcatgtcgggtttttatgtacaacacacttcagaaaggatttggtgacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22603704 |
tttctagggtaatgtgcaacaggtaaaatacaaacaccaacttcagtgcttgcaggtcgggtttttatgtacgacacacttcagaaaggatttggtgacc |
22603803 |
T |
|
| Q |
201 |
gatgattggaattcctagagaaatgttgtttcttttgagcaattaaatgttgttgttgacttttgtcatccacaaagaatggttccttaaacagttagtg |
300 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| |
|
|
| T |
22603804 |
gatgattggaatccctagagaaatgttgtttcttttgagcaattaaatgttgttgttgacttttgtcttccacaatgaatggttccttaaacaattagtg |
22603903 |
T |
|
| Q |
301 |
ctcataacaggtttcttaattagcttttcgttcacttttctttccttaatattctt |
356 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
22603904 |
ctcataacaggtttcttaattagcttttcactcaattttctttccttaatattctt |
22603959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 20188412 - 20188748
Alignment:
| Q |
1 |
ctcaacaaaaatttgttcttcaatttttgccttcattattgtaggggaggcgtggcctagatagtgagatagggaaccagggacatcgcgtcgcattctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20188412 |
ctcaacaaaaatttgttcttcaatttttgccttcattattgtaggggaggagtggcctagatagtgagatagggaaccagggacatcgcgctgcattctt |
20188511 |
T |
|
| Q |
101 |
tttctagggtaatgtgcaacaggtaaaatacaaacaccaacttcagtgcttgcatgtcgggtttttatgtacaacacacttcagaaaggatttggtgacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20188512 |
tttctagggtaatgtgcaacaggtaaaata-------caacttcagtgcttgcagatcgggtttttatgtacgacacacttcagaaaggatttggtgacc |
20188604 |
T |
|
| Q |
201 |
gatgattggaattcctagagaaatgttgtttcttttgagcaattaaatgttgttgttgacttttgtcatccacaaagaatggttccttaaacagttagtg |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
20188605 |
gatgattgaaattcctagagaaatgttgtttcttttgatcaattaaatgatgttgttgacttttgttttcca------------ccttaaacagttagtg |
20188692 |
T |
|
| Q |
301 |
ctcataacaggtttcttaattagcttttcgttcacttttctttccttaatattctt |
356 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
20188693 |
ttcataacaggtttcttaattagcttttcactcacttttctttccttaattttctt |
20188748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 51091743 - 51091788
Alignment:
| Q |
16 |
ttcttcaatttttgccttcattattgtaggggaggcgtggcctaga |
61 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||| ||| |||||| |
|
|
| T |
51091743 |
ttcttcaaattttgccttcattattgtgggggaggagtgacctaga |
51091788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 15214293 - 15213957
Alignment:
| Q |
1 |
ctcaacaaaaatttgttcttcaatttttgccttcattattgtaggggaggcgtggcctagatagtgagatagggaaccagggacatcgcgtcgcattctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| | | ||||||| |
|
|
| T |
15214293 |
ctcaacaaaaatttgttcttcaatttttgccttcattattgtaggggaggagtggcctggatagtgagatagggaaccagggacatcgtgccacattctt |
15214194 |
T |
|
| Q |
101 |
tttctagggtaatgtgcaacaggtaaaatacaaacaccaacttcagtgcttgcatgtcgggtttttatgtacaacacacttcagaaaggatttggtgacc |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||| ||| |||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
15214193 |
tttctagggtaacgtgcaacaggtaaaata-------caacttcagtgctagcaggtcgggtttttatgaacgacacacttcagaaaggatttggtgacc |
15214101 |
T |
|
| Q |
201 |
gatgattggaattcctagagaaatgttgtttcttttgagcaattaaatgttgttgttgacttttgtcatccacaaagaatggttccttaaacagttagtg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
15214100 |
gatgattggaattcctagagaaatgttgtttcttttgagcaatgaaatgatgttgttgacttttgtcttcca------------ccttaaacagttagtg |
15214013 |
T |
|
| Q |
301 |
ctcataacaggtttcttaattagcttttcgttcacttttctttccttaatattctt |
356 |
Q |
| |
|
||||||||| |||||||||||||||||| | |||||||||| |||||||| ||||| |
|
|
| T |
15214012 |
ctcataacatgtttcttaattagctttttgctcacttttctatccttaattttctt |
15213957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 15253512 - 15253176
Alignment:
| Q |
1 |
ctcaacaaaaatttgttcttcaatttttgccttcattattgtaggggaggcgtggcctagatagtgagatagggaaccagggacatcgcgtcgcattctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| | | ||||||| |
|
|
| T |
15253512 |
ctcaacaaaaatttgttcttcaatttttgccttcattattgtaggggaggagtggcctggatagtgagatagggaaccagggacatcgtgccacattctt |
15253413 |
T |
|
| Q |
101 |
tttctagggtaatgtgcaacaggtaaaatacaaacaccaacttcagtgcttgcatgtcgggtttttatgtacaacacacttcagaaaggatttggtgacc |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||| ||| |||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
15253412 |
tttctagggtaacgtgcaacaggtaaaata-------caacttcagtgctagcaggtcgggtttttatgaacgacacacttcagaaaggatttggtgacc |
15253320 |
T |
|
| Q |
201 |
gatgattggaattcctagagaaatgttgtttcttttgagcaattaaatgttgttgttgacttttgtcatccacaaagaatggttccttaaacagttagtg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
15253319 |
gatgattggaattcctagagaaatgttgtttcttttgagcaatgaaatgatgttgttgacttttgtcttcca------------ccttaaacagttagtg |
15253232 |
T |
|
| Q |
301 |
ctcataacaggtttcttaattagcttttcgttcacttttctttccttaatattctt |
356 |
Q |
| |
|
||||||||| |||||||||||||||||| | |||||||||| |||||||| ||||| |
|
|
| T |
15253231 |
ctcataacatgtttcttaattagctttttgctcacttttctatccttaattttctt |
15253176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 22845850 - 22845740
Alignment:
| Q |
30 |
ccttcattattgtaggggaggcgtggcctagatagtgagatagggaaccagggacatcgcgtcgcattctttttctagggtaatgtgcaacaggtaaaat |
129 |
Q |
| |
|
||||||||||| | ||||||| ||| |||||| ||||||||||||||| || |||||| | || ||| |||| ||||||||| |||||||| ||||||| |
|
|
| T |
22845850 |
ccttcattattatcggggaggagtgacctagacagtgagatagggaacaagagacatcacaccg-atttttttactagggtaaggtgcaacaagtaaaat |
22845752 |
T |
|
| Q |
130 |
acaaacaccaac |
141 |
Q |
| |
|
|||||||||||| |
|
|
| T |
22845751 |
acaaacaccaac |
22845740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 201 - 270
Target Start/End: Original strand, 24630537 - 24630606
Alignment:
| Q |
201 |
gatgattggaattcctagagaaatgttgtttcttttgagcaattaaatgttgttgttgacttttgtcatc |
270 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||| | ||||||||| |||| |
|
|
| T |
24630537 |
gatgattggaattcctagataaatgttgtttcttttgagcaattcaatgttggttctgacttttggcatc |
24630606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University