View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_127 (Length: 361)
Name: NF11453A_low_127
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_127 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 6e-93; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 5 - 209
Target Start/End: Original strand, 38275378 - 38275582
Alignment:
| Q |
5 |
gagcaaagagaataagaaccaacaaagcctcgaacaagaatcggcccaaaatgctgaaatcatgacctctttttgcggcccaaaatgtgtaaagagtcaa |
104 |
Q |
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| T |
38275378 |
gagcaaagagaataagaaccaacaaagcctcgaacaagaatcggcccaaaatgctgaaatcatgacctctctttgcggcccaaaatgtgtaaagagtcaa |
38275477 |
T |
|
| Q |
105 |
gctgaatgcaactgcagtagttgatataacagatactagaatggctttccctgcatccgaattatcaagnnnnnnnntagcaattgttatttcaagtgtt |
204 |
Q |
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| T |
38275478 |
gctgaacgcaactgcagtagttgatataacagatactagaatggctttccctgcatccgaattatcaagaaaaaaaatagcaattgttatttcaagtgtt |
38275577 |
T |
|
| Q |
205 |
cagat |
209 |
Q |
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||||| |
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| T |
38275578 |
cagat |
38275582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 5 - 209
Target Start/End: Original strand, 38271627 - 38271831
Alignment:
| Q |
5 |
gagcaaagagaataagaaccaacaaagcctcgaacaagaatcggcccaaaatgctgaaatcatgacctctttttgcggcccaaaatgtgtaaagagtcaa |
104 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||| | ||| || |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38271627 |
gagcaaagagaataagaaccaacaaagctcccaacaagaatcggtctaaagagccgaaatcatgacctctttttgcggcccaatatgtgtaaagagtcaa |
38271726 |
T |
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| Q |
105 |
gctgaatgcaactgcagtagttgatataacagatactagaatggctttccctgcatccgaattatcaagnnnnnnnntagcaattgttatttcaagtgtt |
204 |
Q |
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| T |
38271727 |
gctgaacacaactgcaatagttgatataacagatactagaattgctttccctgcatccgaattatcaagaaacaagatagaaattgttttttcaagtgtt |
38271826 |
T |
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| Q |
205 |
cagat |
209 |
Q |
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||||| |
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| T |
38271827 |
cagat |
38271831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 38 - 209
Target Start/End: Original strand, 38280334 - 38280505
Alignment:
| Q |
38 |
acaagaatcggcccaaaatgctgaaatcatgacctctttttgcggcccaaaatgtgtaaagagtcaagctgaatgcaactgcagtagttgatataacaga |
137 |
Q |
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|||||||| |||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38280334 |
acaagaatgggcctaaaaagctgaaatcatgacctcttcttgcggcccaaaatgtgtaaagagtcaagctgaacacaactgcagtagttgatataacaga |
38280433 |
T |
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| Q |
138 |
tactagaatggctttccctgcatccgaattatcaagnnnnnnnntagcaattgttatttcaagtgttcagat |
209 |
Q |
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| T |
38280434 |
tactagaatgactttccctgcatccgaattatcaagaaacaaaatagcaattgttatcacaagtgttcagat |
38280505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 38313207 - 38313349
Alignment:
| Q |
18 |
aagaaccaacaaagcctcgaacaagaatcggcccaaaatgctgaaatcatgacctctttttgcggcccaaaatgtgtaaagagtcaagctgaatgcaact |
117 |
Q |
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||||||||||||||| | ||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
38313207 |
aagaaccaacaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaacc |
38313306 |
T |
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| Q |
118 |
gcagtagttgatataacagatactagaatggctttccctgcat |
160 |
Q |
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| T |
38313307 |
acagtagtcaatatgacagcttctagaattactttccctgcat |
38313349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 266 - 337
Target Start/End: Original strand, 38275639 - 38275710
Alignment:
| Q |
266 |
agatttgtttcagccaccataaacaagaaacaaacggtttggtttggattttggtccacggctctagaacca |
337 |
Q |
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| T |
38275639 |
agatttgtttcagccaccataaacaagaaacaaacggtttggtttggattttggtccacgactctagaacca |
38275710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 266 - 337
Target Start/End: Original strand, 38271890 - 38271961
Alignment:
| Q |
266 |
agatttgtttcagccaccataaacaagaaacaaacggtttggtttggattttggtccacggctctagaacca |
337 |
Q |
| |
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|||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| || |||||||| |
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| T |
38271890 |
agatttgtttgggccaccataaacaagaaacaatcggtttggtttggatgttggtccacgactttagaacca |
38271961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 337
Target Start/End: Original strand, 38280564 - 38280632
Alignment:
| Q |
268 |
atttgtttcagccaccataaacaagaaacaaacggtttggtttggattttggtccacggctctagaacca |
337 |
Q |
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||||||||||||||||||||||||||||||| | |||||| |||||||||||||||| ||||||||||| |
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| T |
38280564 |
atttgtttcagccaccataaacaagaaacaatcagtttgg-ttggattttggtccacaactctagaacca |
38280632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 38272078 - 38272042
Alignment:
| Q |
278 |
gccaccataaacaagaaacaaacggtttggtttggat |
314 |
Q |
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||||||||||||||||||||| ||||| ||||||||| |
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| T |
38272078 |
gccaccataaacaagaaacaatcggttcggtttggat |
38272042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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