View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_128 (Length: 360)
Name: NF11453A_low_128
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_128 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 21 - 353
Target Start/End: Original strand, 52483851 - 52484195
Alignment:
| Q |
21 |
gttttcagcttctggttgtgctggttcgtttttgttgagattgaaggacatgactcgttgtaaaagagacggttttctaacgagttgaggcttagttgag |
120 |
Q |
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| T |
52483851 |
gttttcagcttccggttgtgctggtacgtttttgttgagattgaaggacatgactcgttgtaaaagagacggttttctaacgagttgaggcttagttgag |
52483950 |
T |
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| Q |
121 |
tcagactcagactcgggttgaacgtaatgtgtctgactctgtggatattgtggttcgtgtttgttgagattgaaggacataactctctctaacaaagaag |
220 |
Q |
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| T |
52483951 |
tcagactcagactcgggttgaacgtaatgtg------tctgtggatattgtggttcgtgtttgttgagattgaaggacataactctctctaacaaagaag |
52484044 |
T |
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| Q |
221 |
gttttcgaacgagttgagggtgagtgaactcgga------------------ctctggctcgggttgtgcaacaaatgatggttcttggttgtagtgacg |
302 |
Q |
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| T |
52484045 |
gttttcgaacgagttgagggtgagtgaactcggactcggactctgactctagctctggctcgggttgtgcaacaaatgatggttcttggttgtagtgacg |
52484144 |
T |
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| Q |
303 |
gaggttaaaggacctgatacggttgagaagtgaaggtgaacgattgagttg |
353 |
Q |
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| T |
52484145 |
gaggttaaaggacctgatacggttgagaagtgaaggtgaacgattgagttg |
52484195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 52464696 - 52464762
Alignment:
| Q |
30 |
ttctggttgtgctggttcgtttttgttgagattgaaggacatgactcgttgtaaaagagacggtttt |
96 |
Q |
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| T |
52464696 |
ttctgtttgtgctggttcgtgtttgttgagattgaaagacaagactcgctgtaacagtgaaggtttt |
52464762 |
T |
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