View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_129 (Length: 360)

Name: NF11453A_low_129
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_129
NF11453A_low_129
[»] chr3 (15 HSPs)
chr3 (161-354)||(8260709-8260902)
chr3 (161-351)||(8265675-8265866)
chr3 (161-351)||(8258602-8258796)
chr3 (12-96)||(8260560-8260644)
chr3 (167-258)||(8350129-8350220)
chr3 (34-96)||(8350014-8350076)
chr3 (161-258)||(8352867-8352964)
chr3 (37-96)||(8258478-8258537)
chr3 (37-96)||(8265551-8265610)
chr3 (167-238)||(8252975-8253046)
chr3 (22-92)||(8334002-8334073)
chr3 (55-96)||(8352761-8352802)
chr3 (163-235)||(8356436-8356508)
chr3 (41-96)||(8252867-8252922)
chr3 (163-235)||(8360609-8360681)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 161 - 354
Target Start/End: Original strand, 8260709 - 8260902
Alignment:
Q  161 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcacttt 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260709 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcacttt 8260808  T
Q  261 gaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgtaggttgaacttcatgtagttaacttgatctatttatagatat 354  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260809 gaagagggttttctgtttatgtaagtgtggaaagctgaaatgatttagttgtaggttgaacttcatgtagttaacttgatctatttatagatat 8260902  T

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Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 161 - 351
Target Start/End: Original strand, 8265675 - 8265866
Alignment:
Q  161 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaa-agtgatttaatttgcactt 259  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  8265675 atcataatcagaaacttgagacgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccataaaaaaagtgatttaatttgcactt 8265774  T
Q  260 tgaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgtaggttgaacttcatgtagttaacttgatctatttataga 351  Q
    ||||| ||||||  |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||    
T  8265775 tgaagtgggtttcttgtttatgtaagtgtggaaagctgaaatgatttagttgtgggttgaacttcatgtaattaacttgatccatttataga 8265866  T

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Target: chr3; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 161 - 351
Target Start/End: Original strand, 8258602 - 8258796
Alignment:
Q  161 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaa-agtgatttaatttgcactt 259  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||| | |||||||||||||||||| |||| |||||||||||||||||||    
T  8258602 atcataatcagaaacttgagatgatgagtttgaagaatggccaaagcaacttaaaatggatgaaatcaaagccataaaaaaagtgatttaatttgcactt 8258701  T
Q  260 tgaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgtaggttgaacttcatgtagt---taacttgatctatttataga 351  Q
    ||||| ||||||| |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||||||    
T  8258702 tgaagtgggttttttgtttatgtaagtgtgcaaagctgaaatgatttagttgtgggttgaacttcatgtaattaataacttgatctatttataga 8258796  T

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Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 8260560 - 8260644
Alignment:
Q  12 gaaagtggatgcagattaatactgcatgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260560 gaaagtggatgcagattaatactgcatgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 8260644  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 167 - 258
Target Start/End: Original strand, 8350129 - 8350220
Alignment:
Q  167 atcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcact 258  Q
    ||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| ||||||||||||||||||||||||||||||||||||||||    
T  8350129 atcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaaaaagtgatttaatttgcact 8350220  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 8350014 - 8350076
Alignment:
Q  34 tgcatgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 96  Q
    ||||||||||||| |||||| ||||| |||||||||||||||||||||||| |||||||||||    
T  8350014 tgcatgactacaagcgtgagggataatagttaacagggaaataagaaactataattggagctc 8350076  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 161 - 258
Target Start/End: Original strand, 8352867 - 8352964
Alignment:
Q  161 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcact 258  Q
    |||||||||| |||||||||| |||||||   ||||| | ||||||||| | || || ||||||||||||||||||||||||||||||  ||||||||    
T  8352867 atcataatcataaacttgagaagatgagttcgaagaaggaccaaagcaattgaaaaatgatgaaatcaaagccatcaaaaagtgatttggtttgcact 8352964  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 8258478 - 8258537
Alignment:
Q  37 atgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 96  Q
    |||||||||||||||||||||||||||||  |||||||| | | ||||||||||||||||    
T  8258478 atgactacaaacgtgagagataagagttagtagggaaatgatatactacaattggagctc 8258537  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 8265551 - 8265610
Alignment:
Q  37 atgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 96  Q
    ||||||||||||| ||||||||||||||| ||||||||| | | ||||||||||||||||    
T  8265551 atgactacaaacgagagagataagagttagcagggaaatgatatactacaattggagctc 8265610  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 8252975 - 8253046
Alignment:
Q  167 atcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaa 238  Q
    ||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| ||||||||||||||||||||    
T  8252975 atcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaa 8253046  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 8334002 - 8334073
Alignment:
Q  22 gcagattaatactgcatgactacaaacgtgagag-ataagagttaacagggaaataagaaactacaattgga 92  Q
    |||||||||||| || ||||||||| |||||| | |||| |||||||  |||||||||||||||||||||||    
T  8334002 gcagattaataccgcctgactacaagcgtgaggggataatagttaacgaggaaataagaaactacaattgga 8334073  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 8352761 - 8352802
Alignment:
Q  55 gataagagttaacagggaaataagaaactacaattggagctc 96  Q
    ||||| |||||||||||||||||||||||||||||| |||||    
T  8352761 gataatagttaacagggaaataagaaactacaattgaagctc 8352802  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 8356436 - 8356508
Alignment:
Q  163 cataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccat 235  Q
    ||||||||||||||||||||||||||| | ||||  | ||||||||| | ||||| | | |||||||||||||    
T  8356436 cataatcagaaacttgagatgatgagtttgaagagagaccaaagcaattgaagaacggtaaaatcaaagccat 8356508  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 8252867 - 8252922
Alignment:
Q  41 ctacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 96  Q
    |||||| ||||||||| ||  |||||||| ||||||||||||| ||||||||||||    
T  8252867 ctacaagcgtgagagacaattgttaacagagaaataagaaactgcaattggagctc 8252922  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 8360609 - 8360681
Alignment:
Q  163 cataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccat 235  Q
    ||||||||||||||||||||||| ||| | ||||  | || |||||| | ||||| | |||||||||||||||    
T  8360609 cataatcagaaacttgagatgataagtttgaagagagaccgaagcaattgaagaaagctgaaatcaaagccat 8360681  T

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