View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_13 (Length: 535)
Name: NF11453A_low_13
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 22 - 518
Target Start/End: Complemental strand, 1711998 - 1711503
Alignment:
| Q |
22 |
aattttgttaatcatattgctgtgttcatatctagttatatcagcaattcccaaattgatttgatagaaacactagctctatagtaaacttacgatatac |
121 |
Q |
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| T |
1711998 |
aattttgttaatcatattgctgtgttcatatctagttatatcggcaattcccaaattgatttgatagaaacactagctctatagtaaacttacgatatac |
1711899 |
T |
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| Q |
122 |
tttctagaatatggacacatgcatgatattgatcgcacgtactttttgttccatctatttggacttttattgtcttaatactattattattttagataga |
221 |
Q |
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| T |
1711898 |
tttctagaatatggacacatgcatgatattgatcgcacgtactttttgttccatctatttggacttttattgtcttaatactattattattttagataga |
1711799 |
T |
|
| Q |
222 |
gcaaatacaaccttaacacgttacttccttaatctccatctataatcaatgaaagtaactaccaaagcaaataaagtccaaatccgatataattacatct |
321 |
Q |
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| T |
1711798 |
gcaaatacaaccttaacacgttgcttccttaatctccatctataatcaatgaaagtaactaccaaagcaaataaagtccaaatccgatataattacatct |
1711699 |
T |
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| Q |
322 |
ccaacataataaagttcacagttcctagcacttttgcttgatcatacatgagttagtaaaatcaaatataaacttgagttggtaaatggaaatttattaa |
421 |
Q |
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| T |
1711698 |
ccaacataataaagttcacagttcctagcacttttgcttgatcatacatgagttagtaaaatcaaatataaacttgagttggtaaatggaaatttattaa |
1711599 |
T |
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| Q |
422 |
ttaagaatatgtagtggagaaatatatcatatattaattcaattatnnnnnnnngtctccgaaacagataacataattaattgtctcactctgatgt |
518 |
Q |
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| T |
1711598 |
ttaagaatatgtagtggagaaatatatcatatattaattcaattat-taaaaaagtctccaaaacggataacataattaattgtctcactctgatgt |
1711503 |
T |
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