View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_132 (Length: 357)
Name: NF11453A_low_132
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_132 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 26131724 - 26132080
Alignment:
| Q |
1 |
tgtttcaattttttgctcttgctttcggggtgccataattagacccctatcctccctgtatccttgacatgaacagacaaaggtttgctgaagaatttca |
100 |
Q |
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|||||||||||||||||| |||||||||| | ||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26131724 |
tgtttcaattttttgctcgtgctttcgggtttccatagttagtcccctatcctccctgtatccttgacatgaacaaacaaaggtttgctgaagaatttca |
26131823 |
T |
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| Q |
101 |
cctttgcgatccctaacaacttgccccttacgaactgaaaatccagacattctagcaaaccaagagtaaaacatttatgcaacctccaacccaacaaact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||| |
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| T |
26131824 |
cctttgcgatccctaacaacttgccccttacgaactgaaaatccagacattctagcaaatcaagagtaaaacatgtaggcaacctccaacccaacaaact |
26131923 |
T |
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| Q |
201 |
catacctttccacatcatctaaacaaaagttttcaatgtcaatcttaagtatatctaccatatcttttataacaatcagatagacttcagaagcgtgaat |
300 |
Q |
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| T |
26131924 |
catacctttccacatcatctaaacaaaagttttcaatgtcaatcttaagtatatctaccatatcttttataacaatcagatagacttcagaagcgtgaat |
26132023 |
T |
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| Q |
301 |
tccatccgaaaaaacatgcacattttcattagattcatccaataaacgttcatctaa |
357 |
Q |
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| T |
26132024 |
tccatccgaaaaaacatgcacattttcattagattcatccagtaaacgttcatctaa |
26132080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 11009786 - 11009499
Alignment:
| Q |
1 |
tgtttcaattttttgctcttgctttcggggtgccataattagacccctatcctccctgtatccttgacatgaacagacaaaggtttgctgaagaatttca |
100 |
Q |
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||||||| ||||| |||| |||||||| | ||||| ||| ||||||||||||||||| |||||||||||||| |||||||| | || || || || |
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| T |
11009786 |
tgtttcattttttggctcacgctttcggttttccatagttaaccccctatcctccctgtaaccttgacatgaacaaacaaaggtctttggacgactt-ca |
11009688 |
T |
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| Q |
101 |
cctttgcgatccctaacaacttgccccttacgaactgaaaatccagacattctagcaaaccaagagtaaaacatttatgcaacctccaacccaacaaact |
200 |
Q |
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| T |
11009687 |
ccatttcgatccctcgccacttgccccttacgaactgaaaatcctgacatgctggcaaaccaagagtaaaacatgtaggcaacatctaaaccaacaaatt |
11009588 |
T |
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| Q |
201 |
catacctttccacatcatctaaacaaaagttttcaatgtcaatcttaagtatatctaccatatcttttataacaatcagatagacttca |
289 |
Q |
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| T |
11009587 |
catatctttccacatcagccacacaaatgttttccaggtcaatattcattatatcaaccatatcttttatcataatcggattgacttca |
11009499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 44 - 215
Target Start/End: Original strand, 58039 - 58210
Alignment:
| Q |
44 |
cccctatcctccctgtatccttgacatgaacagacaaaggtttgctgaagaatttcacctttgcgatccctaacaacttgccccttacgaactgaaaatc |
143 |
Q |
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|||||||||||| || ||||||||||||||| ||||| |||||||||| | |||||| || ||||||||||| | ||| ||||||||||||||||||| |
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| T |
58039 |
cccctatcctccttgagtccttgacatgaacaaacaaaagtttgctgaactacttcaccattccgatccctaaccatttggcccttacgaactgaaaatc |
58138 |
T |
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| Q |
144 |
cagacattctagcaaaccaagagtaaaacatttatgcaacctccaacccaacaaactcatacctttccacat |
215 |
Q |
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| T |
58139 |
ccgacgttctagcaaaccaagagtagaaaagataagccacatccaatccaacaaattcatatctctccacat |
58210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 108 - 276
Target Start/End: Complemental strand, 21860124 - 21859956
Alignment:
| Q |
108 |
gatccctaacaacttgccccttacgaactgaaaatccagacattctagcaaaccaagagtaaaacatttatgcaacctccaacccaacaaactcatacct |
207 |
Q |
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|||||||||| ||||| |||||||||||||||||||| ||| ||||| ||||||||||||| || | || ||||| ||||| |||||||| ||||| || |
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| T |
21860124 |
gatccctaaccacttggcccttacgaactgaaaatcccgacgttctaccaaaccaagagtagaaaagataagcaacatccaatccaacaaattcatatct |
21860025 |
T |
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| Q |
208 |
ttccacatcatctaaacaaaagttttcaatgtcaatcttaagtatatctaccatatcttttataacaat |
276 |
Q |
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| T |
21860024 |
ctctacatcagccaagcaaaaattttccaagtcaatcttcattatatcaaccatttcttttatgacaat |
21859956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 174
Target Start/End: Original strand, 37553766 - 37553907
Alignment:
| Q |
33 |
ccataattagacccctatcctccctgtatccttgacatgaacagacaaaggtttgctgaagaatttcacctttgcgatccctaacaacttgccccttacg |
132 |
Q |
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||||| |||| ||| ||||||||| ||||||||||| ||||| ||||||||||| | | || || | | ||||||||||| || |||| | |||| | |
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| T |
37553766 |
ccatagttagccccatatcctcccactatccttgacacgaacatgcaaaggtttgccggataacttgatcattgcgatccctcaccacttagctcttatg |
37553865 |
T |
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| Q |
133 |
aactgaaaatccagacattctagcaaaccaagagtaaaacat |
174 |
Q |
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| T |
37553866 |
aactacaaacccatacattttaacaaaccaagagtaaaacat |
37553907 |
T |
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