View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_136 (Length: 354)
Name: NF11453A_low_136
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_136 |
 | |
|
| [»] scaffold0421 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0421 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 205 - 332
Target Start/End: Original strand, 13270 - 13397
Alignment:
| Q |
205 |
aaaaagattcatgtaccactcttttggtacacccttttctaccaccaatgacatggcatggaaatattaaaaaatttaactttgtaaataatgataataa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
13270 |
aaaaagattcatgtaccactcttttggtacacccttttctaccaccgatgacatggcatggaaatattaaaaaatttaactatgtaaagaatgataataa |
13369 |
T |
|
| Q |
305 |
agaaaagaatagatccaacaaacaaaaa |
332 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
13370 |
agaaaagaatagatccaacaaacgaaaa |
13397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 103 - 202
Target Start/End: Complemental strand, 42212019 - 42211920
Alignment:
| Q |
103 |
ccacacgtgacagttgcaaaaagtgtgagaagaagggtttagatttgagagaaaatgaaaaccgtagaaaaggacagagaaagtgcacgtcacaaaaagt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42212019 |
ccacacgtgacagttgcaaaaagtgtgagaagaagggtttagatttgagagaaaatgaaaaccgtagaaaaggacagagaaagtgcacgtcacaaaaagt |
42211920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 212 - 319
Target Start/End: Complemental strand, 47345551 - 47345444
Alignment:
| Q |
212 |
ttcatgtaccactcttttggtacacccttttctaccaccaatgacatggcatggaaatattaaaaaatttaactttgtaaataatgataataaagaaaag |
311 |
Q |
| |
|
|||||||| ||||||||||||||||||||| || ||| |||||||| ||||||||||||||| |||||||||||||||| |||||||| ||||||||| |
|
|
| T |
47345551 |
ttcatgtattactcttttggtacacccttttatagcactgatgacatgacatggaaatattaaacaatttaactttgtaaagaatgataaaaaagaaaag |
47345452 |
T |
|
| Q |
312 |
aatagatc |
319 |
Q |
| |
|
|||||||| |
|
|
| T |
47345451 |
aatagatc |
47345444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 319
Target Start/End: Original strand, 3798071 - 3798110
Alignment:
| Q |
280 |
ttaactttgtaaataatgataataaagaaaagaatagatc |
319 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
3798071 |
ttaactttgtaaagaatgataaaaaagaaaagaatagatc |
3798110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University