View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_137 (Length: 353)
Name: NF11453A_low_137
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_137 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0057 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 46844883 - 46844533
Alignment:
| Q |
1 |
agagatcaaaatcaagcactttgatataagatttctgaggattatttcatattctaagtccattgaagcaaaggtcaaattgtttttgtttaggtggaat |
100 |
Q |
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| T |
46844883 |
agagatcaaaatcaagcactttgatataagatttctgaggattatttcatattctaagtccattgaagcaaaggtcaaattgtttttgtttaggtggaat |
46844784 |
T |
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| Q |
101 |
tatgtcacatactcaatcatcgttagcttccaatttaggcatcttttgtgttatataggcatcacgtcctccaacaacatcctctggtcacggcattcat |
200 |
Q |
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| T |
46844783 |
tatgtcacatactcaatcatccttagcttccaatttaggcatctt--gtgctatataggcatcacgtcctccaacaacatcctctggtcacggcattcat |
46844686 |
T |
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| Q |
201 |
ggctgcaaaatgccatctcacccctgcaatgcaataatgcaactaggttcaagatctcatggtattcactatcattccttcaaggaatcgttctaattct |
300 |
Q |
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| T |
46844685 |
ggctgcaaaatgccatctcacccctgcaatgcaataatgcaactaggttcaagatctcatggtattcactatcattccttcaaggaatcggtctaattct |
46844586 |
T |
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| Q |
301 |
aatcggacacaaattagcaaatcatactttcctttgatgtaataagacagaca |
353 |
Q |
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| T |
46844585 |
aatcggacacaaattagcaaattatactttcctttgatgtaataagacagaca |
46844533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 48929 - 48986
Alignment:
| Q |
167 |
tcctccaacaacatcctctggtcacggcattcatggctgcaaaatgccatctcacccc |
224 |
Q |
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| T |
48929 |
tcctccaacagtttcctctggttacggcattcagggttgcaaaatgccatctcacccc |
48986 |
T |
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