View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_140 (Length: 352)

Name: NF11453A_low_140
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_140
NF11453A_low_140
[»] chr4 (2 HSPs)
chr4 (14-346)||(40821517-40821849)
chr4 (241-346)||(40826201-40826306)
[»] chr7 (9 HSPs)
chr7 (46-346)||(20292021-20292311)
chr7 (226-335)||(20301393-20301502)
chr7 (248-346)||(20064893-20064991)
chr7 (241-346)||(20229247-20229352)
chr7 (241-346)||(20261830-20261935)
chr7 (158-233)||(20092587-20092660)
chr7 (250-346)||(20170431-20170527)
chr7 (250-346)||(20172424-20172520)
chr7 (226-346)||(20296617-20296737)
[»] scaffold0027 (1 HSPs)
scaffold0027 (224-269)||(135558-135603)


Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 14 - 346
Target Start/End: Complemental strand, 40821849 - 40821517
Alignment:
Q  14 aaaagaaaagaaaagtgataacctaaataagtagtgaaatgactcaaacaacgttaagtttttaaaatgatagagattttaagaaccatgatttacttgt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  40821849 aaaagaaaagaaaagtgataacctaaataagtagtgaaatgactcaaacaacattaagttcttaaaatgatagagattttcagaaccatgatttacttgt 40821750  T
Q  114 gattttttagactcttgactttaaggaaatctcaaatcatcattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatggg 213  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40821749 gattttttagactcttgactttaaggaaatctcaaatcattattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatggg 40821650  T
Q  214 tgtttcagtcgttgttcaaatatgctctctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaat 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |    
T  40821649 tgtttcagtcgttgttcaaatatgctctctgttctgttcattttgttttgcactttgttacaagttagtattgccataaccaacatcacatcatcccagt 40821550  T
Q  314 acataaaggacaccgaaactcttatctccaaag 346  Q
    ||||||||||||| |||||||||||||||||||    
T  40821549 acataaaggacactgaaactcttatctccaaag 40821517  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 346
Target Start/End: Complemental strand, 40826306 - 40826201
Alignment:
Q  241 tctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatct 340  Q
    |||||| |||| ||| ||| ||||||||   ||||| |||||||||| |||  || |||||||||||| |||| ||| |||||| | ||||||||  |||    
T  40826306 tctgttttgtttattctgtgttgctattccctacaatttagtattgcaatagacaccatcacatcatctcaattcatcaaggaccctgaaactctactct 40826207  T
Q  341 ccaaag 346  Q
    ||||||    
T  40826206 ccaaag 40826201  T

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Target: chr7 (Bit Score: 151; Significance: 8e-80; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 46 - 346
Target Start/End: Original strand, 20292021 - 20292311
Alignment:
Q  46 agtgaaatgactcaaacaacgttaagtttttaaaatgatagagattttaagaaccatgatttacttgtgattttttagactcttgactttaag---gaaa 142  Q
    ||||||||| |||||| ||| |||| ||||| |||| |||    |||| |||||  |||||||| |||||||||||||||||||||| |||||   ||||    
T  20292021 agtgaaatgtctcaaagaacattaattttttgaaataata----tttttagaactttgatttacctgtgattttttagactcttgacgttaagaaggaaa 20292116  T
Q  143 tctcaaatcatcattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgttcaaatatgctctc 242  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||  ||||||      ||||||||||||||    
T  20292117 tctcaaatcattattaataagaaagagtggtt-tttttgtatcatagtctacttgttgatcatataatgggt--ttcagt------tcaaatatgctctc 20292207  T
Q  243 tgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatctcc 342  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||| |||||| | |||||||||||||||    
T  20292208 tgttctgttcattttgttttgctatttgttacaagttaatattgccataaacaccatcacatcatcccaattcatcaaggacgctgaaactcttatctcc 20292307  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 335
Target Start/End: Original strand, 20301393 - 20301502
Alignment:
Q  226 tgttcaaatatgctctctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggaca 325  Q
    ||||||||| || ||| |||| |||||||| |||||| |||||||||||  |||||||| |  |||  || ||||||||||||||||| ||| ||||||     
T  20301393 tgttcaaatctgttctttgttttgttcattctgttttcctatttgttacgtgttagtatcggtatagacaccatcacatcatcccaattcatcaaggacc 20301492  T
Q  326 ccgaaactct 335  Q
    | ||||||||    
T  20301493 ctgaaactct 20301502  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 346
Target Start/End: Complemental strand, 20064991 - 20064893
Alignment:
Q  248 tgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatctccaaag 346  Q
    |||||||| ||||||  ||||||||||| |||||||| |  |||  || ||||||||||||||||| ||| |||||| | ||||| ||  |||||||||    
T  20064991 tgttcattgtgtttttgtatttgttacatgttagtatcggtatagacaccatcacatcatcccaattcatcaaggaccctgaaacactactctccaaag 20064893  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 346
Target Start/End: Original strand, 20229247 - 20229352
Alignment:
Q  241 tctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatct 340  Q
    |||||| | |||||||||| |||||||||| |||| |||||| |||  |||  || |||||||||||| ||||  || || ||| | |||||||| ||||    
T  20229247 tctgttttattcattttgtgttgctatttggtacatgttagtgttggtatagacaccatcacatcatctcaatttatcaaagaccctgaaactctaatct 20229346  T
Q  341 ccaaag 346  Q
    ||||||    
T  20229347 ccaaag 20229352  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 346
Target Start/End: Original strand, 20261830 - 20261935
Alignment:
Q  241 tctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatct 340  Q
    |||||| | |||||||||| |||||||||| |||| |||||| |||  |||  || |||||||||||| ||||  || || ||| | |||||||| ||||    
T  20261830 tctgttgtattcattttgtgttgctatttggtacatgttagtgttggtatagacaccatcacatcatctcaatttatcaaagaccctgaaactctaatct 20261929  T
Q  341 ccaaag 346  Q
    ||||||    
T  20261930 ccaaag 20261935  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 20092660 - 20092587
Alignment:
Q  158 aataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgttcaaa 233  Q
    ||||||||||||||||||||| ||||||||| | | | | ||||||| |||||  |||||||||  ||||||||||    
T  20092660 aataagaaagagtggttgtttatgtatcatacttttagtattgatcacataat--gtgtttcaggtgttgttcaaa 20092587  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 346
Target Start/End: Complemental strand, 20170527 - 20170431
Alignment:
Q  250 ttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatctccaaag 346  Q
    |||||||||| |||||||||| |||| |||||| |||  |||  || |||||||||||| ||||  || || ||| | |||||||| ||||||||||    
T  20170527 ttcattttgtgttgctatttgctacatgttagtgttggtatagacaccatcacatcatctcaatttatcaaagaccctgaaactctaatctccaaag 20170431  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 346
Target Start/End: Complemental strand, 20172520 - 20172424
Alignment:
Q  250 ttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatctccaaag 346  Q
    |||||||||| |||||||||| |||| |||||| |||  |||  || |||||||||||| ||||  || || ||| | |||||||| ||||||||||    
T  20172520 ttcattttgtgttgctatttgctacatgttagtgttggtatagacaccatcacatcatctcaatttatcaaagaccctgaaactctaatctccaaag 20172424  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 346
Target Start/End: Original strand, 20296617 - 20296737
Alignment:
Q  226 tgttcaaatatgctctctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggaca 325  Q
    ||||||||| || | |||||| | | |||| |||||||| ||||||||||  | ||||||||||||  ||  || ||||| ||||||| ||| ||||||     
T  20296617 tgttcaaatctgttttctgttttatccattctgttttgcaatttgttacacatgagtattgccatagacactataacatcttcccaattcatcaaggacc 20296716  T
Q  326 ccgaaactcttatctccaaag 346  Q
    | |||||||| ||||| ||||    
T  20296717 ctgaaactctaatctcaaaag 20296737  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 135603 - 135558
Alignment:
Q  224 gttgttcaaatatgctctctgttctgttcattttgttttgctattt 269  Q
    ||||||||||| || |||||||| |||| |||||||||||||||||    
T  135603 gttgttcaaatgtgttctctgttttgttaattttgttttgctattt 135558  T

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