View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_142 (Length: 352)

Name: NF11453A_low_142
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_142
NF11453A_low_142
[»] chr2 (11 HSPs)
chr2 (2-345)||(41906131-41906471)
chr2 (118-214)||(41905988-41906085)
chr2 (118-325)||(42223186-42223387)
chr2 (235-320)||(35791130-35791216)
chr2 (120-271)||(11915204-11915352)
chr2 (128-271)||(16590632-16590772)
chr2 (241-316)||(13315985-13316060)
chr2 (120-214)||(42223029-42223119)
chr2 (242-317)||(11478107-11478184)
chr2 (283-320)||(26498714-26498751)
chr2 (289-317)||(30497288-30497316)
[»] chr7 (18 HSPs)
chr7 (119-345)||(43393848-43394081)
chr7 (119-346)||(9689223-9689448)
chr7 (117-346)||(1853241-1853464)
chr7 (123-332)||(42957366-42957570)
chr7 (118-214)||(3092497-3092592)
chr7 (235-335)||(11625113-11625214)
chr7 (115-320)||(2936121-2936320)
chr7 (114-214)||(45687863-45687962)
chr7 (119-208)||(19377009-19377097)
chr7 (119-214)||(10931892-10931986)
chr7 (126-214)||(1853109-1853196)
chr7 (235-345)||(3092340-3092451)
chr7 (139-214)||(25601972-25602046)
chr7 (121-214)||(27484757-27484850)
chr7 (119-214)||(42957630-42957724)
chr7 (283-320)||(15011935-15011972)
chr7 (178-214)||(25601792-25601828)
chr7 (119-171)||(43393709-43393761)
[»] chr3 (14 HSPs)
chr3 (119-335)||(55257638-55257854)
chr3 (235-346)||(25124880-25124992)
chr3 (119-316)||(7308179-7308374)
chr3 (120-335)||(17582462-17582672)
chr3 (121-326)||(17030688-17030892)
chr3 (120-212)||(25158790-25158881)
chr3 (119-332)||(43426358-43426566)
chr3 (118-214)||(43426210-43426306)
chr3 (118-214)||(7308041-7308136)
chr3 (123-214)||(7013404-7013494)
chr3 (289-320)||(7272694-7272725)
chr3 (278-320)||(45151758-45151800)
chr3 (169-214)||(17030578-17030623)
chr3 (119-214)||(5303720-5303812)
[»] chr5 (9 HSPs)
chr5 (118-346)||(37869450-37869677)
chr5 (123-313)||(13153539-13153726)
chr5 (235-346)||(42778944-42779054)
chr5 (173-335)||(21144012-21144172)
chr5 (116-346)||(20355154-20355382)
chr5 (119-199)||(38082862-38082940)
chr5 (121-214)||(21144228-21144320)
chr5 (121-213)||(6527451-6527540)
chr5 (235-271)||(15399726-15399762)
[»] chr8 (10 HSPs)
chr8 (121-346)||(9235426-9235653)
chr8 (118-325)||(23289008-23289214)
chr8 (118-334)||(5600267-5600474)
chr8 (118-334)||(5640146-5640353)
chr8 (235-317)||(24375801-24375884)
chr8 (247-335)||(14698183-14698272)
chr8 (285-346)||(24528878-24528939)
chr8 (173-214)||(37871845-37871886)
chr8 (138-214)||(13373196-13373270)
chr8 (178-214)||(9235345-9235381)
[»] chr4 (8 HSPs)
chr4 (119-346)||(13555600-13555825)
chr4 (119-346)||(8810018-8810242)
chr4 (242-346)||(42161355-42161461)
chr4 (116-334)||(5283752-5283968)
chr4 (119-271)||(8678824-8678974)
chr4 (144-214)||(16734105-16734174)
chr4 (118-317)||(49277663-49277858)
chr4 (178-214)||(23091898-23091934)
[»] scaffold0188 (1 HSPs)
scaffold0188 (119-271)||(13299-13448)
[»] scaffold0067 (1 HSPs)
scaffold0067 (118-321)||(25844-26043)
[»] chr6 (8 HSPs)
chr6 (178-346)||(25166992-25167159)
chr6 (178-335)||(9044550-9044705)
chr6 (235-345)||(9662827-9662938)
chr6 (111-214)||(3816726-3816829)
chr6 (119-214)||(33200037-33200130)
chr6 (173-214)||(334901-334942)
chr6 (288-320)||(18274310-18274342)
chr6 (235-271)||(20757621-20757657)
[»] chr1 (10 HSPs)
chr1 (120-320)||(13436984-13437180)
chr1 (235-346)||(25059913-25060025)
chr1 (118-338)||(5469439-5469658)
chr1 (242-335)||(17890186-17890281)
chr1 (117-214)||(44078768-44078864)
chr1 (283-326)||(22315292-22315335)
chr1 (283-320)||(14909962-14909999)
chr1 (121-212)||(7261559-7261653)
chr1 (117-214)||(22315142-22315240)
chr1 (121-214)||(1701201-1701293)
[»] scaffold0004 (1 HSPs)
scaffold0004 (235-324)||(82309-82399)
[»] scaffold0142 (2 HSPs)
scaffold0142 (126-214)||(34441-34530)
scaffold0142 (178-214)||(35030-35066)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 2 - 345
Target Start/End: Complemental strand, 41906471 - 41906131
Alignment:
Q  2 agtatgaaataatatgaaaaagtagcacattgtgttactcatgtctagtcacttaggtccagtttgaataaacaactaagttata-gctcaagtgtttat 100  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||| ||  ||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  41906471 agtatgatataatatgaaaaagtagcacactgtgttactcatgtccag--acttaggtccagtttgaataaacaactgagttataagctcaagtgtttat 41906374  T
Q  101 ctataaggtgtttttataagggttaatatatgtttaccccct-ataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaac 199  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||| ||||||||| || |||||||||||||||||||    
T  41906373 ctataaggtgtttttataagggttaatatatgtttacccctttataatagtagcgatttccagtttacccctctgtaaaataaattgtttaaatttcaac 41906274  T
Q  200 cttgtaatttgaagannnnnnnattttggatctttttcatgacatcaaattacaaaattttaggtactttcgacattgtaacatgagagaatttcagttt 299  Q
    |||||||||||||||       |||||||| ||||   ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41906273 cttgtaatttgaagatttttttattttggaccttt---atggcatcaaattacaaaattttaggtactttcgaccttgtaacatgagagaatttcagttt 41906177  T
Q  300 accccctgccatatcatcgatatttcattttaccccctttcatatc 345  Q
    ||||||||||||||||| ||||||||| ||||||||||| ||||||    
T  41906176 accccctgccatatcattgatatttcagtttacccccttccatatc 41906131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 41905988 - 41906085
Alignment:
Q  118 aagggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaa-ttgtttaaatttcaaccttgtaatttgaaga 214  Q
    ||||||||||| ||||||||||||| ||||| ||||||||||||||||||||| || || |||||| ||||||| | | ||||| |||||||||||||    
T  41905988 aagggttaatacatgtttaccccctgtaatattagcgattttcagtttatccccctttaaaaaaaatttgtttagaatccaaccctgtaatttgaaga 41906085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 325
Target Start/End: Complemental strand, 42223387 - 42223186
Alignment:
Q  118 aagggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaagannn 217  Q
    ||||||||||||||||||||    | ||||| ||| ||||| | ||||| ||| ||| | ||||||||||||| ||| ||||| |||||||||||||       
T  42223387 aagggttaatatatgtttaca---tgtaatattagtgatttccggttta-cccactgaaaaaaaaattgtttagattccaaccctgtaatttgaagattt 42223292  T
Q  218 nnnnattttggatctttttcatgacatcaaattacaaaattttaggtactttcg-acattgtaacatgagagaatttcagtttaccccctgccatatcat 316  Q
        |||||| | |||   |||| |||||||||||||||||| |||||||||||  | ||||||  ||| |||||||| |||||||||||| ||||||||    
T  42223291 tttgattttgaacctt---catggcatcaaattacaaaatttaaggtactttcgccccttgtaatttgaaagaatttcggtttaccccctgacatatcat 42223195  T
Q  317 cgatatttc 325  Q
    | |||||||    
T  42223194 caatatttc 42223186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 235 - 320
Target Start/End: Complemental strand, 35791216 - 35791130
Alignment:
Q  235 ttcatgacatcaaattacaaaattttaggtactttcgacatt-gtaacatgagagaatttcagtttaccccctgccatatcatcgat 320  Q
    |||||| |||||||||||||||||| ||||||||||| | || ||||  |||||| ||||| |||||||||||||||||||||||||    
T  35791216 ttcatgccatcaaattacaaaatttaaggtactttcgccctttgtaatttgagagtatttcggtttaccccctgccatatcatcgat 35791130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 271
Target Start/End: Complemental strand, 11915352 - 11915204
Alignment:
Q  120 gggttaatatatgtttaccccc-tataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaagannnn 218  Q
    |||||||||||||||||||||| | ||||| |||| |||||| |||||   | ||||| |||| |||||||||||||||||  | |||||||||||        
T  11915352 gggttaatatatgtttacccccctgtaatattagcaattttcggtttacttc-ctgtaaaaaatattgtttaaatttcaactctataatttgaagatttt 11915254  T
Q  219 nnnattttggatctttttcatgacatcaaattacaaaattttaggtactttcg 271  Q
        ||||||| |   ||||||||||||||||||||||||| ||| |||||||    
T  11915253 ttggttttggacc---ttcatgacatcaaattacaaaatttaaggcactttcg 11915204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 271
Target Start/End: Complemental strand, 16590772 - 16590632
Alignment:
Q  128 atatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaagannnnnnnattttg 227  Q
    |||||||||||| || ||||| ||| |||||   ||||||| || |  | ||||||||||||| ||||||| | |||||||||||||        |||||    
T  16590772 atatgtttaccctctgtaatattagtgatttctggtttatcactgtaaaaaaaaaattgtttatatttcaaacctgtaatttgaagattatttggttttg 16590673  T
Q  228 gatctttttcatgacatcaaattacaaaattttaggtactttcg 271  Q
    || |||   ||||||||||||||||||||||| |||||||||||    
T  16590672 gacctt---catgacatcaaattacaaaatttaaggtactttcg 16590632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 13316060 - 13315985
Alignment:
Q  241 acatcaaattacaaaattttaggtactttcgacattgtaacatgagagaatttcagtttaccccctgccatatcat 316  Q
    |||| |||||||||||||| ||||||||||| |  |||||  ||| ||||||||  ||||||||||||||||||||    
T  13316060 acattaaattacaaaatttcaggtactttcgcccatgtaatttgaaagaatttcgatttaccccctgccatatcat 13315985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 120 - 214
Target Start/End: Original strand, 42223029 - 42223119
Alignment:
Q  120 gggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    ||||||||||||||||||||| ||||||| ||| ||||| | |||||  |||||  | ||||| ||||||| ||||||||| |||||||||||||    
T  42223029 gggttaatatatgtttacccc-tataatattagtgatttcc-gttta--cctcttgaaaaaaatttgtttagatttcaaccctgtaatttgaaga 42223119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 11478107 - 11478184
Alignment:
Q  242 catcaaattacaaaattttaggtactttcgac-attgtaacatgagagaatttcagtttaccc-cctgccatatcatc 317  Q
    |||||||||||||||||| ||||||||||| |  ||||||  || || |||||| |||||||| ||||||||||||||    
T  11478107 catcaaattacaaaatttaaggtactttcgcctcttgtaatttgggataatttcggtttaccctcctgccatatcatc 11478184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 320
Target Start/End: Original strand, 26498714 - 26498751
Alignment:
Q  283 tgagagaatttcagtttaccccctgccatatcatcgat 320  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  26498714 tgagaaaatttcggtttaccccctgccatatcatcgat 26498751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Complemental strand, 30497316 - 30497288
Alignment:
Q  289 aatttcagtttaccccctgccatatcatc 317  Q
    |||||||||||||||||||||||||||||    
T  30497316 aatttcagtttaccccctgccatatcatc 30497288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 119 - 345
Target Start/End: Complemental strand, 43394081 - 43393848
Alignment:
Q  119 agggttaatatatgtttaccccc-tataatagtagcgattttcagtttatccctctgtacaaaaaat--------tgtttaaatttcaaccttgtaattt 209  Q
    ||||||||||||||||||||||| | ||||||||||||||| | ||||||||  ||||| ||||||         |||||||||||||||| ||||||||    
T  43394081 agggttaatatatgtttacccccatgtaatagtagcgatttccggtttatcca-ctgtaaaaaaaaaaaaaaaactgtttaaatttcaaccctgtaattt 43393983  T
Q  210 gaagannnnnnnattttggatctttttcatgacatcaaattacaaaattttaggtactttcgaca-ttgtaacatgagagaatttcagtttaccccctgc 308  Q
    |||||       |||||||| |||   |||| |||||||||||||||||| |||||||||||||  ||||||| ||||||||||||||||||||||||||    
T  43393982 gaagatttttttattttggacctt---catggcatcaaattacaaaatttaaggtactttcgacccttgtaacgtgagagaatttcagtttaccccctgc 43393886  T
Q  309 catatcatcgatatttcatttta-ccccctttcatatc 345  Q
     ||| ||||||||||||| |||| ||||||| ||||||    
T  43393885 tataccatcgatatttcagtttatcccccttccatatc 43393848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 119 - 346
Target Start/End: Original strand, 9689223 - 9689448
Alignment:
Q  119 agggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaatt-gtttaaatttcaaccttgtaatttgaagannn 217  Q
    ||||||||||||||||||||| || ||||| ||||||||| | ||||| ||||  ||| |||||||| | ||| ||||||||| |||||||||||||       
T  9689223 agggttaatatatgtttaccctctgtaatattagcgatttccggtttacccct--gtaaaaaaaatttggttagatttcaaccctgtaatttgaagattt 9689320  T
Q  218 nnnn-attttggatctttttcatgacatcaaattacaaaattttaggtactttcgaca-ttgtaacatgagagaatttcagtttaccccctgccatatca 315  Q
         |||||||| |||   ||||||||||||||| ||||||| ||||||||| | |  ||||||  |||||||||||| ||||||||||| ||||||||    
T  9689321 ttttgattttggacctt---catgacatcaaattataaaatttaaggtacttttgtcccttgtaatttgagagaatttcggtttaccccctaccatatca 9689417  T
Q  316 tcgatatttcattttaccccctttcatatca 346  Q
    || |||||||  ||||||||||  |||||||    
T  9689418 tcaatatttcggtttaccccctaccatatca 9689448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 117 - 346
Target Start/End: Complemental strand, 1853464 - 1853241
Alignment:
Q  117 taagggttaatatatgtttaccccctataatagtagcgattttcagtttatccctc-tgtacaaaaaattgtttaaatttcaaccttgtaatttgaagan 215  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||  |||||  |||| |||| ||||| ||||||| ||| |||||||||||||||||||     
T  1853464 taagggttaatatatgtttaccccctgtaatattagtgatttttggttta--cctcatgtaaaaaaatttgtttagattccaaccttgtaatttgaagat 1853367  T
Q  216 nnnnnnattttggatctttttcatgacatcaaattacaaaattttaggtactttcg-acattgtaacatgagagaatttcagtttaccccctgccatatc 314  Q
          |||||||| |   |||||| ||||||||| |||||||| |||||||||||  |  || ||  ||||||||||||   |||||||||||| ||||    
T  1853366 tttttgattttggacc---ttcatggcatcaaatttcaaaatttaaggtactttcgtcccctgaaatttgagagaatttc--gttaccccctgccttatc 1853272  T
Q  315 atcgatatttcattttaccccctttcatatca 346  Q
    |||||||||||  |||||||||| ||||||||    
T  1853271 atcgatatttc-gtttaccccctgtcatatca 1853241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 332
Target Start/End: Original strand, 42957366 - 42957570
Alignment:
Q  123 ttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaagannnnnnna 222  Q
    |||||||||||||||||||| ||||  ||||||||||  ||||| ||| || || ||||||||||||| |||  |||| |||||||||||         |    
T  42957366 ttaatatatgtttaccccctgtaat--tagcgatttttggtttacccc-ctataaaaaaaattgtttagattctaaccctgtaatttgaattttttttga 42957462  T
Q  223 ttttggatctttttcatgacatcaaattacaaaattttaggtactttcg-acattgtaacatgagagaatttcagtttaccccctgccatatcatcgata 321  Q
    ||||||| |||   ||||||||||||||||||||||| |||||||||||  | ||||||  ||||||||||||  ||||||| ||| |||||| ||||||    
T  42957463 ttttggacctt---catgacatcaaattacaaaatttaaggtactttcgtcccttgtaatttgagagaatttcgatttaccctctgtcatatcctcgata 42957559  T
Q  322 tttcattttac 332  Q
    |||||| ||||    
T  42957560 tttcatgttac 42957570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 3092592 - 3092497
Alignment:
Q  118 aagggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    |||| |||||||||||||||||| | ||| | ||||||||||||||||| ||| ||||| ||| ||||||||| ||| ||||| |||||||||||||    
T  3092592 aaggattaatatatgtttaccccttgtaaaattagcgattttcagttta-ccccctgtaaaaagaattgtttagattccaaccctgtaatttgaaga 3092497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 335
Target Start/End: Complemental strand, 11625214 - 11625113
Alignment:
Q  235 ttcatgacatcaaattacaaaattttaggtactttcgaca-ttgtaacatgagagaatttcagtttaccccctgccatatcatcgatatttcattttacc 333  Q
    ||||||||||||||||||| ||||| ||||||||||| |  |||||   || ||||||||| ||||||||||| ||||||||| ||||||||  ||||||    
T  11625214 ttcatgacatcaaattacataatttaaggtactttcgccccttgtagtttgtgagaatttcggtttaccccctaccatatcattgatatttcggtttacc 11625115  T
Q  334 cc 335  Q
    ||    
T  11625114 cc 11625113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 320
Target Start/End: Original strand, 2936121 - 2936320
Alignment:
Q  115 tataagggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    |||||||||||||| || |||||| ||| ||||| ||||||||||| |||||| || ||||  |||||| |||||| ||| ||||| ||||||||||| |    
T  2936121 tataagggttaatacatatttacctcctgtaatattagcgattttcggtttatgcc-ctgt--aaaaaaatgtttagattccaaccatgtaatttgaaaa 2936217  T
Q  215 nnnnnnnattttggatctttttcatgacatcaaattacaaaattttaggtactttcg-acattgtaacatgagagaatttcagtttaccccctgccatat 313  Q
            |||| || |   ||||||||||||||||||||||||| |||||||||||  |  |||||  |||||||||||  ||||| |||||| |||||    
T  2936218 ttatttggttttagacc---ttcatgacatcaaattacaaaatttaaggtactttcgccccctgtaatttgagagaatttgggttta-cccctgtcatat 2936313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 214
Target Start/End: Complemental strand, 45687962 - 45687863
Alignment:
Q  114 ttataagggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaag 213  Q
    ||||||||||||||| ||||||||||| | ||||| |||||||||||  |||| | | ||||| ||||  ||||||| ||||||||||| ||||||||||    
T  45687962 ttataagggttaatacatgtttacccc-tctaatattagcgattttcgatttaactccctgtagaaaagtttgtttagatttcaaccttataatttgaag 45687864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 19377009 - 19377097
Alignment:
Q  119 agggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatt 208  Q
    |||||||||||||||| | ||||| ||||| ||||||||||  ||||| |||| || | ||||||||||||||||| ||||| |||||||    
T  19377009 agggttaatatatgtt-atcccctgtaatattagcgatttttggtttacccctgtgaaaaaaaaattgtttaaattccaaccctgtaatt 19377097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 10931892 - 10931986
Alignment:
Q  119 agggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    ||||||||||||||||||  || | ||||| ||| ||||| | ||||||||   |||| ||||||||||||| ||||||||| |||||||||||||    
T  10931892 agggttaatatatgtttagtccatgtaatattagtgatttccggtttatccaa-tgtaaaaaaaattgtttagatttcaaccctgtaatttgaaga 10931986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 1853109 - 1853196
Alignment:
Q  126 atatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    ||||||||||||||| | ||||| ||||||||| |  |||| ||| ||||| ||||||||||||| ||| | ||| |||||||||||||    
T  1853109 atatatgtttaccccatgtaatattagcgatttccgatttaccccactgta-aaaaaattgtttagattcccaccctgtaatttgaaga 1853196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 345
Target Start/End: Original strand, 3092340 - 3092451
Alignment:
Q  235 ttcatgacatcaaattacaaaattttaggtactttcgacat-tgtaacatgagagaatttcagtttaccccctgccatatcatcgatatttcattttacc 333  Q
    ||||| ||||||||||| ||||||| ||||||||||  |   | |||  |||||||||| | ||||||||||| ||||||||| ||||||||  ||||||    
T  3092340 ttcattacatcaaattataaaatttaaggtactttcaccccctataatttgagagaattacggtttacccccttccatatcattgatatttcgatttacc 3092439  T
Q  334 ccctttcatatc 345  Q
    || | |||||||    
T  3092440 ccatgtcatatc 3092451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 25602046 - 25601972
Alignment:
Q  139 ccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    |||| ||||| || |||||||||||||| || |||||| ||||||||||||| ||| ||| | |||||||||||||    
T  25602046 ccctttaatattaacgattttcagttta-ccttctgtaaaaaaaattgtttagattccaatcctgtaatttgaaga 25601972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 27484757 - 27484850
Alignment:
Q  121 ggttaatatatgtttacccc-ctataatagtagcgattttcagttta-tccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    ||||||||||||||||  || || ||||| | ||||||||| ||||| ||||| |||| ||||||||||||| ||||||||| |||||||||||||    
T  27484757 ggttaatatatgtttattcctctgtaatattggcgattttcggtttactccct-tgta-aaaaaattgtttagatttcaaccatgtaatttgaaga 27484850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 42957724 - 42957630
Alignment:
Q  119 agggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    |||||||||||||||||||||||| ||||| ||| || || | ||||| ||| ||||| ||||| ||||||  |||  |||| |||||||||||||    
T  42957724 agggttaatatatgtttaccccctgtaatattagtgaattccggttta-ccccctgtaaaaaaatttgtttggattctaaccctgtaatttgaaga 42957630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 320
Target Start/End: Complemental strand, 15011972 - 15011935
Alignment:
Q  283 tgagagaatttcagtttaccccctgccatatcatcgat 320  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  15011972 tgagagaatttcggtttaccctctgccatatcatcgat 15011935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 25601792 - 25601828
Alignment:
Q  178 aaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  25601792 aaaaaattgtttagattccaaccttgtaatttgaaga 25601828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 43393709 - 43393761
Alignment:
Q  119 agggttaatatatgtttaccccctataatagtagcgattttcagtttatccct 171  Q
    |||||||||| ||||||||||||| ||||| |||| |||| ||||||| ||||    
T  43393709 agggttaatacatgtttaccccctgtaatattagcaatttccagtttacccct 43393761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 119 - 335
Target Start/End: Original strand, 55257638 - 55257854
Alignment:
Q  119 agggttaatatatgttta--ccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaagann 216  Q
    ||||||||||||||||||  |||||| ||||| ||||||||| | ||||| ||| ||||| ||||||||||||| ||| ||||| | |||||||||||      
T  55257638 agggttaatatatgtttaccccccctgtaatattagcgatttccggttta-ccccctgtaaaaaaaattgtttagattccaaccctataatttgaagatt 55257736  T
Q  217 nnnnnattttggatctttttcatgacatcaaattacaaaattttaggtactttcg-acattgtaacatgagagaatttcagtttac-cccctgccatatc 314  Q
         |||||||| |   |||||| |||||||||||||||||| |||||||||||  | || |||  ||| ||||||||||||||| |||||||||||||    
T  55257737 tttttattttggacc---ttcatggcatcaaattacaaaatttaaggtactttcgccccttataatttgatagaatttcagtttacacccctgccatatc 55257833  T
Q  315 atcgatatttcattttacccc 335  Q
    |||||||||||| ||||||||    
T  55257834 atcgatatttcagtttacccc 55257854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 235 - 346
Target Start/End: Original strand, 25124880 - 25124992
Alignment:
Q  235 ttcatgacatcaaattacaaaattttaggtactttcgaca-ttgtaacatgagagaatttcagtttaccccctgccatatcatcgatatttcattttacc 333  Q
    |||||| |||||||||| ||||||| ||||||||||| |  ||||||  || ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25124880 ttcatggcatcaaattataaaatttaaggtactttcgccccttgtaatttgggagaatttcagtttaccccctgccatatcatcgatatttcagtttacc 25124979  T
Q  334 ccctttcatatca 346  Q
    ||||| |||||||    
T  25124980 cccttccatatca 25124992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 119 - 316
Target Start/End: Complemental strand, 7308374 - 7308179
Alignment:
Q  119 agggttaatatatgtttaccccctat--aatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaagann 216  Q
    |||||||||||||||||| ||||| |  |||| |||||||||   ||||| ||| ||||| ||||||||||| | ||| ||||| | |||||||||||      
T  7308374 agggttaatatatgtttaacccctctgtaatattagcgatttctggtttacccc-ctgtaaaaaaaattgttcagattccaaccctataatttgaagatt 7308276  T
Q  217 nnnnnattttggatctttttcatgacatcaaattacaaaattttaggtactttcgacattgtaacatgagagaatttcagtttaccccctgccatatcat 316  Q
         ||||| || |||   |||| |||||||||||||||||| ||||||||||| |  |||||  |||||||||||| |||||||||||||||||||||    
T  7308275 tttttatttttgacctt---catggcatcaaattacaaaatttaaggtactttcgcccctgtaatttgagagaatttcggtttaccccctgccatatcat 7308179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 120 - 335
Target Start/End: Complemental strand, 17582672 - 17582462
Alignment:
Q  120 gggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaagannnnn 219  Q
    ||||||||||||||||||    ||||||| ||||||||||| ||||| |  |||||| ||||| |||||||||||  ||||||||||||||||||         
T  17582672 gggttaatatatgtttaca---tataatattagcgattttcggtttagc--tctgtaaaaaaatttgtttaaattcaaaccttgtaatttgaagattttt 17582578  T
Q  220 nn--attttggatctttttcatgacatcaaattacaaaattttaggtactttcgaca-ttgtaacatgagagaatttcagtttaccccctgccatatcat 316  Q
        |||||||| |||   |||  |||||||||||||||||| ||||||||||| |  ||||||  ||||||| |||| ||||||| |||||||||| ||    
T  17582577 ttttattttggacctt---catagcatcaaattacaaaatttaaggtactttcgccccttgtaatttgagagattttcggtttacctcctgccatataat 17582481  T
Q  317 cgatatttcattttacccc 335  Q
    |||||||||| || |||||    
T  17582480 cgatatttcagttaacccc 17582462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 121 - 326
Target Start/End: Complemental strand, 17030892 - 17030688
Alignment:
Q  121 ggttaatatatgtttaccccc-tataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaagannnnn 219  Q
    ||||||||||||||||||||  | ||||| ||||||||| | |||||| || ||||| ||||  ||||||  ||||||||| | |||||| ||||         
T  17030892 ggttaatatatgtttacccctatgtaatattagcgatttccggtttattcccctgtaaaaaactttgttttgatttcaaccctctaatttaaagattttt 17030793  T
Q  220 nn-attttggatctttttcatgacatcaaattacaaaattttaggtactttcgacattgtaacatgagagaatttcagtttaccccctgccatatcatcg 318  Q
       |||||||| |||   |||| |||||||||||||||||| ||||||||||  |  |||||  |||||||||||  ||||||| |||||||||||||||    
T  17030792 ttgattttggacctt---catggcatcaaattacaaaatttaaggtactttcacccctgtaaattgagagaattttggtttacctcctgccatatcatcg 17030696  T
Q  319 atatttca 326  Q
    ||||||||    
T  17030695 atatttca 17030688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 212
Target Start/End: Original strand, 25158790 - 25158881
Alignment:
Q  120 gggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaa 212  Q
    ||||||||||||||||||||| | ||||| ||||||||||  ||||||||  ||||| ||||||||||||| ||| ||||| |||||||||||    
T  25158790 gggttaatatatgtttacccc-tgtaatattagcgatttttggtttatcctcctgtaaaaaaaattgtttagattccaaccctgtaatttgaa 25158881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 119 - 332
Target Start/End: Complemental strand, 43426566 - 43426358
Alignment:
Q  119 agggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaagannnn 218  Q
    |||||||||||||||||||||||  ||||| |||||||||   ||||| |||  ||||  |||||||||||| |||  |||| |||||||||||||        
T  43426566 agggttaatatatgtttacccccg-taatattagcgatttctggtttacccca-tgta--aaaaattgtttagattcgaaccctgtaatttgaagatttt 43426471  T
Q  219 nnnattttggatctttttcatgacatcaaattacaaaattttaggtactttcgacat-tgtaacatgagagaatttcagtttaccccc-tgccatatcat 316  Q
       ||||| || |||   |||  |||||||||||||||||| ||||||||| | |   |||||  |||||||||||| |||||||||| |||||||||||    
T  43426470 ttgattttagacctt---catagcatcaaattacaaaatttaaggtacttttgccccctgtaatttgagagaatttcggtttacccccctgccatatcat 43426374  T
Q  317 cgatatttcattttac 332  Q
    |||||||||| |||||    
T  43426373 cgatatttcagtttac 43426358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 43426210 - 43426306
Alignment:
Q  118 aagggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaatt-gtttaaatttcaaccttgtaatttgaaga 214  Q
    ||||||||||| ||||||||||||| ||||| ||| ||||||| ||||| ||| | ||| ||||||||  |||| ||| ||||| |||||||||||||    
T  43426210 aagggttaatacatgtttaccccctgtaatattagtgattttcggttta-cccccagtaaaaaaaattattttatattccaaccctgtaatttgaaga 43426306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 7308041 - 7308136
Alignment:
Q  118 aagggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    ||||||||||||||||||||||||| ||||| ||| || || | ||||| ||| | ||| ||||| ||||||||||| ||||| || | ||||||||    
T  7308041 aagggttaatatatgtttaccccctgtaatattagtgaattccggttta-ccccccgtaaaaaaatttgtttaaattccaaccctgaagtttgaaga 7308136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 214
Target Start/End: Complemental strand, 7013494 - 7013404
Alignment:
Q  123 ttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    |||||| ||||||| || || ||||| ||| ||||||||||||| ||| ||||  ||| |||||||||||||||||   |||||||||||||    
T  7013494 ttaatacatgtttatcctctgtaatattagtgattttcagtttacccc-ctgtgaaaataattgtttaaatttcaattctgtaatttgaaga 7013404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 320
Target Start/End: Complemental strand, 7272725 - 7272694
Alignment:
Q  289 aatttcagtttaccccctgccatatcatcgat 320  Q
    ||||||||||||||||||||||||||||||||    
T  7272725 aatttcagtttaccccctgccatatcatcgat 7272694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 320
Target Start/End: Complemental strand, 45151800 - 45151758
Alignment:
Q  278 taacatgagagaatttcagtttaccccctgccatatcatcgat 320  Q
    |||| ||||| |||||| |||||||||||||||||||||||||    
T  45151800 taacttgagaaaatttcggtttaccccctgccatatcatcgat 45151758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 17030578 - 17030623
Alignment:
Q  169 cctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    |||||||| |||| |||||||| ||| |||||||||||||||||||    
T  17030578 cctctgtaaaaaatattgtttagattccaaccttgtaatttgaaga 17030623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 5303812 - 5303720
Alignment:
Q  119 agggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    |||||| |||||||||||||   ||||||| ||| ||||||| |||||  || ||||| ||||| ||||||| ||| ||||| |||||||||||||    
T  5303812 agggtttatatatgtttacca--tataatattagtgattttcggtttacacc-ctgtaaaaaaatttgtttagattccaaccctgtaatttgaaga 5303720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 118 - 346
Target Start/End: Complemental strand, 37869677 - 37869450
Alignment:
Q  118 aagggttaatatatgtttaccc-cctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttc-aaccttgtaatttgaagan 215  Q
    |||||||||||||||||||  | ||| ||||| || |||||||| ||||||| | ||||| ||||||||||||| ||||| ||||||||||||||||||     
T  37869677 aagggttaatatatgtttaatctcctgtaatattaacgattttcggtttatctc-ctgtaaaaaaaattgtttagatttccaaccttgtaatttgaagat 37869579  T
Q  216 nnnnnnattttggatctttttcatgacatcaaattacaaaattttaggtactttcgaca-ttgtaacatgagagaatttcagtttaccccctgccatatc 314  Q
          |||||||| |||   |||| |||||||||||||||||| ||||||||| | |  || |||  ||||||||||||  |||||| |||||||||||    
T  37869578 tctttgattttggacctt---catgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttacctcctgccatatc 37869482  T
Q  315 atcgatatttcattttaccccctttcatatca 346  Q
    |||||||||||| ||||||||||  |||||||    
T  37869481 atcgatatttcagtttaccccctcccatatca 37869450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 313
Target Start/End: Original strand, 13153539 - 13153726
Alignment:
Q  123 ttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaagannnnnnna 222  Q
    ||||||||| |||||||||| ||||| ||||||||| | |||||   ||||||| ||||| ||||||| ||| |||||||||||||||||||       |    
T  13153539 ttaatatatatttaccccct-taatattagcgatttccggtttacatctctgtaaaaaaatttgtttagattccaaccttgtaatttgaagatttcttta 13153637  T
Q  223 ttttggatctttttcatgacatcaaattacaaaattttaggtactttcg-acattgtaacatgagagaatttcagtttaccccctgccatat 313  Q
    ||||||| |   |||||  ||||||| ||||||||||  ||||||||||  | ||||||  |||||||||||| ||||||||||||||||||    
T  13153638 ttttggacc---ttcatagcatcaaaatacaaaatttacggtactttcgtcccttgtaatttgagagaatttcggtttaccccctgccatat 13153726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 235 - 346
Target Start/End: Complemental strand, 42779054 - 42778944
Alignment:
Q  235 ttcatgacatcaaattacaaaattttaggtactttcgacattgtaacatgagagaatttcagtttaccccctgccatatcatcgatatttcattttaccc 334  Q
    ||||||||||||||||||||||||| ||||||||||| | ||||||  |||||||||||| |||||  ||||  ||||||||||||||||||  ||||||    
T  42779054 ttcatgacatcaaattacaaaatttaaggtactttcgcccttgtaatttgagagaatttcggttta-tccctatcatatcatcgatatttcaggttaccc 42778956  T
Q  335 cctttcatatca 346  Q
    |||  |||||||    
T  42778955 cctgccatatca 42778944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 335
Target Start/End: Original strand, 21144012 - 21144172
Alignment:
Q  173 tgtacaaaaaattgtttaaatttcaaccttgtaatttgaagannnnnnnattttggatctttttcatgacatcaaattacaaaattttaggtactttcga 272  Q
    |||| ||||||||||||| ||| ||||| |||||||||||||       |||||||| |||   |||| |||||||||||||||||| | ||||||| |     
T  21144012 tgtaaaaaaaattgtttagattccaaccctgtaatttgaagattttttgattttggacctt---catggcatcaaattacaaaatttgatgtacttttgc 21144108  T
Q  273 ca-ttgtaacatgagagaatttcagtttaccccctgccatatcatcgatatttcattttacccc 335  Q
    |  ||||||  |||||||||||  |||||||| ||| |||||||||||||||| | ||||||||    
T  21144109 cccttgtaatttgagagaattttggtttaccctctgtcatatcatcgatattttagtttacccc 21144172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 346
Target Start/End: Complemental strand, 20355382 - 20355154
Alignment:
Q  116 ataagggttaatatatgttta-ccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    ||||||||||||||||||||| |||||| ||||| ||| ||||||| ||||| |   | ||| ||||||||||||| ||| ||| | |||||||||||||    
T  20355382 ataagggttaatatatgtttaaccccctctaatattagtgattttcggtttaccttccggta-aaaaaattgtttagattccaatcctgtaatttgaaga 20355284  T
Q  215 nnnnnnnattttggatctttttcatgacatcaaattacaaaattttaggtactttcgaca-ttgtaacatgagagaatttcagtttaccccctgccatat 313  Q
           |||||| | |||    ||| |||||||||| ||||||| ||||||| | | |  ||||||  |||  ||||||| ||||||||||||| ||||    
T  20355283 ttttttgattttgaaccttg---atggcatcaaattaaaaaatttaaggtactcttgccccttgtaatttgaaggaatttcggtttaccccctgcaatat 20355187  T
Q  314 catcgatatttcattttaccccctttcatatca 346  Q
    |||||||||||   ||||||||||  |||||||    
T  20355186 catcgatattttggtttaccccctaccatatca 20355154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 38082862 - 38082940
Alignment:
Q  119 agggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaac 199  Q
    ||||||||||||||||| |||||||||| | ||||||||| | |||||  ||||| || ||||||||||||| ||||||||    
T  38082862 agggttaatatatgtttgccccctataaaattagcgatttactgttta-acctctcta-aaaaaattgtttagatttcaac 38082940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 21144320 - 21144228
Alignment:
Q  121 ggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    |||||||| ||||||||||| |  |||| ||||||||| | ||||| |||  | || ||||| ||||||| ||| |||||||||||||||||||    
T  21144320 ggttaatacatgtttacccc-tgcaatattagcgatttccggtttacccccttataaaaaaatttgtttagattccaaccttgtaatttgaaga 21144228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 213
Target Start/End: Complemental strand, 6527540 - 6527451
Alignment:
Q  121 ggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaag 213  Q
    |||||||| ||||||||||| ||||||| |||||||| || ||||| | ||||||| |||||| |||||||||| ||||  | ||||||||||    
T  6527540 ggttaatacatgtttacccc-tataatattagcgattatcggttta-ctctctgta-aaaaaactgtttaaattccaactctataatttgaag 6527451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 15399726 - 15399762
Alignment:
Q  235 ttcatgacatcaaattacaaaattttaggtactttcg 271  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  15399726 ttcataacatcaaattacaaaatttaaggtactttcg 15399762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 121 - 346
Target Start/End: Complemental strand, 9235653 - 9235426
Alignment:
Q  121 ggttaatatatgtttaccccc-tataatagtagcgattttcagtttatccctctgtacaaaaaa--ttgtttaaatttcaaccttgtaatttgaagannn 217  Q
    ||||||||||||||||||||| | ||||| ||| ||||| | ||||| ||||||||| ||||||  ||||||| ||||||||| |||||||||||||       
T  9235653 ggttaatatatgtttacccccctgtaatattagtgatttccggtttacccctctgtaaaaaaaaaattgtttagatttcaaccctgtaatttgaagattt 9235554  T
Q  218 nnnnattttggatctttttcatgacatcaaattacaaaattttaggtactttcg-acattgtaacatgagagaatttcagtttaccccctgccatatcat 316  Q
        |||||||| |   |||||| |||||||||||||||||| |||||||||||  | ||||||  ||| |||||||  ||||| ||| || ||||||||    
T  9235553 tttgattttggacc---ttcatggcatcaaattacaaaatttaaggtactttcgccccttgtaatttgaaagaattttggtttaacccttgacatatcat 9235457  T
Q  317 cgatatttcattttacc-ccctttcatatca 346  Q
    |||||||||  |||||| |||| ||||||||    
T  9235456 cgatatttcggtttaccaccctgtcatatca 9235426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 118 - 325
Target Start/End: Complemental strand, 23289214 - 23289008
Alignment:
Q  118 aagggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaagannn 217  Q
    |||||||||||||||||| |||| | ||||| ||| ||||||| ||||||||| ||||| ||||||||||||| ||| ||||| |||||||||||||       
T  23289214 aagggttaatatatgtttgcccc-tgtaatattagtgattttcggtttatccc-ctgtaaaaaaaattgtttagattccaaccctgtaatttgaagattt 23289117  T
Q  218 nnnnattttggatctttttcatgacatcaaattacaaaattttaggtactttcg-acattgtaacatgagagaatttcagttta---ccccctgccatat 313  Q
        | |||||| |   |||||| |||||||||||||||||| |||||||||||  |  |||||  |||||||||||| |||||   ||||||| |||||    
T  23289116 tttaactttggacc---ttcatggcatcaaattacaaaatttaaggtactttcgtcccctgtaatttgagagaatttctgtttaatcccccctgtcatat 23289020  T
Q  314 catcgatatttc 325  Q
    ||||||||||||    
T  23289019 catcgatatttc 23289008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 118 - 334
Target Start/End: Complemental strand, 5600474 - 5600267
Alignment:
Q  118 aagggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaagannn 217  Q
    ||||||||||||||||||||||  ||||||| ||||  ||| | ||||||||   |||| |||||||||||||||||||||||||||||||||||||       
T  5600474 aagggttaatatatgtttaccc--tataatattagccgtttccggtttatcc---tgtaaaaaaaattgtttaaatttcaaccttgtaatttgaagattt 5600380  T
Q  218 nnnnattttggatctttttcatgacatcaaattacaaaattttaggtactttcgacattgtaacatgagagaatttcagtttaccccctgccatatcatc 317  Q
        |||||  |||   |||||| |||||| ||||||||||  ||||||||||| |  | |||  | |||||||||| | || |||||||| |||||||     
T  5600379 ttttattttaaatc---ttcatggcatcaagttacaaaattgaaggtactttcgcccctataattttagagaatttcggatt-ccccctgctatatcatt 5600284  T
Q  318 gatatttcattttaccc 334  Q
    |||| |||| |||||||    
T  5600283 gatagttcagtttaccc 5600267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 118 - 334
Target Start/End: Original strand, 5640146 - 5640353
Alignment:
Q  118 aagggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaagannn 217  Q
    ||||||||||||||||||||||  ||||||| ||||  ||| | ||||||||   |||| |||||||||||||||||||||||||||||||||||||       
T  5640146 aagggttaatatatgtttaccc--tataatattagccgtttccggtttatcc---tgtaaaaaaaattgtttaaatttcaaccttgtaatttgaagattt 5640240  T
Q  218 nnnnattttggatctttttcatgacatcaaattacaaaattttaggtactttcgacattgtaacatgagagaatttcagtttaccccctgccatatcatc 317  Q
        |||||  |||   |||||| |||||| ||||||||||  ||||||||||| |  | |||  | |||||||||| | || |||||||| |||||||     
T  5640241 ttttattttaaatc---ttcatggcatcaagttacaaaattgaaggtactttcgcccctataattttagagaatttcggatt-ccccctgctatatcatt 5640336  T
Q  318 gatatttcattttaccc 334  Q
    |||| |||| |||||||    
T  5640337 gatagttcagtttaccc 5640353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 24375801 - 24375884
Alignment:
Q  235 ttcatgacatcaaattacaaaattttaggtactttcgaca-ttgtaacatgagagaatttcagtttaccccctgccatatcatc 317  Q
    |||||| ||||||||||||||||||  |||||||||| |  ||||||  ||||  |||||||||||||||||||||||||||||    
T  24375801 ttcatggcatcaaattacaaaatttatggtactttcgtcccttgtaatttgagcaaatttcagtttaccccctgccatatcatc 24375884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 335
Target Start/End: Complemental strand, 14698272 - 14698183
Alignment:
Q  247 aattacaaaattttaggtactttcgacatt-gtaacatgagagaatttcagtttaccccctgccatatcatcgatatttcattttacccc 335  Q
    ||||| ||||||| ||||||||| | | || ||||  ||||| ||||||||||| ||||||||||||||||||||||||||  |||||||    
T  14698272 aattataaaatttaaggtacttttgtcctttgtaatttgagaaaatttcagtttgccccctgccatatcatcgatatttcaggttacccc 14698183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 346
Target Start/End: Complemental strand, 24528939 - 24528878
Alignment:
Q  285 agagaatttcagtttaccccctgccatatcatcgatatttcattttaccccctttcatatca 346  Q
    ||||||| || ||||||||||| ||||||||||||||||||| |||||||||| | ||||||    
T  24528939 agagaatctcggtttaccccctaccatatcatcgatatttcagtttaccccctgtaatatca 24528878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 37871886 - 37871845
Alignment:
Q  173 tgtacaaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    |||| ||||||| |||||||||||||||||||||||||||||    
T  37871886 tgtaaaaaaaatagtttaaatttcaaccttgtaatttgaaga 37871845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 13373196 - 13373270
Alignment:
Q  138 cccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    ||||| ||||| ||||||||| | ||||| ||||  ||| ||||||||||||| ||||||||  |||||||||||||    
T  13373196 cccctgtaatattagcgatttccggtttacccct--gtaaaaaaaattgtttatatttcaactctgtaatttgaaga 13373270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 9235345 - 9235381
Alignment:
Q  178 aaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  9235345 aaaaaattgtttagatttcaaccatgtaatttgaaga 9235381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 119 - 346
Target Start/End: Original strand, 13555600 - 13555825
Alignment:
Q  119 agggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaatt-gtttaaatttcaaccttgtaatttgaagannn 217  Q
    ||||||||||||||||||||| || ||||| ||||||||| | ||||| ||||  ||| |||||||| | ||| ||||||||| |||||||||||||       
T  13555600 agggttaatatatgtttaccctctgtaatattagcgatttccggtttacccct--gtaaaaaaaatttggttagatttcaaccctgtaatttgaagattt 13555697  T
Q  218 nnnn-attttggatctttttcatgacatcaaattacaaaattttaggtactttcgaca-ttgtaacatgagagaatttcagtttaccccctgccatatca 315  Q
         |||||||| |||   ||||||||||||||| ||||||| ||||||||| | |  ||||||  |||||||||||| ||||||||||| ||||||||    
T  13555698 ttttgattttggacctt---catgacatcaaattataaaatttaaggtacttttgtcccttgtaatttgagagaatttcggtttaccccctaccatatca 13555794  T
Q  316 tcgatatttcattttaccccctttcatatca 346  Q
    || |||||||  ||||||||||  |||||||    
T  13555795 tcaatatttcggtttaccccctaccatatca 13555825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 119 - 346
Target Start/End: Complemental strand, 8810242 - 8810018
Alignment:
Q  119 agggttaatatatgtttaccccctataatagtagcgattttcagttta-tccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaagannn 217  Q
    ||||||||||||||||||  |||| ||||| ||||||||| | ||||| ||||| |  | ||||||||||| | |||||||||||||||||||||||       
T  8810242 agggttaatatatgttta-tccctgtaatattagcgatttccggtttactccctgt-aaaaaaaaattgttaagatttcaaccttgtaatttgaagattt 8810145  T
Q  218 nnnnattttggatctttttcatgacatcaaattacaaaattttaggtactttcg-acattgtaacatgagagaatttcagtttaccccctgccatatcat 316  Q
        |||||||| |   ||||||||||||||||| ||||||| |||||||||||  |  |||||  ||||| |||||| |||||||||||  ||| ||||    
T  8810144 ttttattttggacc---ttcatgacatcaaattataaaatttaaggtactttcgtcccgtgtaatttgagaaaatttcggtttaccccctatcatgtcat 8810048  T
Q  317 cgatatttcattttaccccctttcatatca 346  Q
    ||||||||||  ||||||||| ||||||||    
T  8810047 cgatatttcaggttaccccctgtcatatca 8810018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 242 - 346
Target Start/End: Complemental strand, 42161461 - 42161355
Alignment:
Q  242 catcaaattacaaaattttaggtactttcga-cattgtaacatgagagaatttcagtttaccc-cctgccatatcatcgatatttcattttacccccttt 339  Q
    |||||||||||||||||| |||||||||||  | ||||||  ||||||||||||  ||||||| ||||||||||||||||||||||| ||||||| || |    
T  42161461 catcaaattacaaaatttaaggtactttcgctccttgtaatttgagagaatttcgatttaccctcctgccatatcatcgatatttcagtttaccctctgt 42161362  T
Q  340 catatca 346  Q
    |||||||    
T  42161361 catatca 42161355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 116 - 334
Target Start/End: Complemental strand, 5283968 - 5283752
Alignment:
Q  116 ataagggttaatatatgttt-accccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    |||||||||||||||||||| ||||||| ||||| ||| ||||||| ||||| |   ||||| ||||||||||||| ||| ||| | |||||||||||||    
T  5283968 ataagggttaatatatgtttaaccccctctaatattagtgattttcggtttaccttcctgta-aaaaaattgtttagattccaatcctgtaatttgaaga 5283870  T
Q  215 nnnnnnnattttggatctttttcatgacatcaaattacaaaattttaggtact-ttcgacattgtaacatgagagaatttcagtttaccccctgccatat 313  Q
           |||||| | |   |||||| |||||||||| ||||||| ||||||| ||   | ||||||  |||  ||||||| ||||||||||||| ||||    
T  5283869 ttttttgattttgaacc---ttcatggcatcaaattaaaaaatttaaggtactcttgccccttgtaatttgaaggaatttcggtttaccccctgcaatat 5283773  T
Q  314 catcgatatttcattttaccc 334  Q
    ||||||||||||  |||||||    
T  5283772 catcgatatttcgatttaccc 5283752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 119 - 271
Target Start/End: Original strand, 8678824 - 8678974
Alignment:
Q  119 agggttaatatatgtttaccccc-tataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaaga-nn 216  Q
    ||||||||||||||||||||||  | ||||| || |||||| ||||||| ||| ||||| ||||||||||||| |||  ||||||||||||||||||       
T  8678824 agggttaatatatgtttacccctatgtaatattatcgatttccagtttacccc-ctgtaaaaaaaattgtttagattcaaaccttgtaatttgaagattt 8678922  T
Q  217 nnnnnattttggatctttttcatgacatcaaattacaaaattttaggtactttcg 271  Q
         |||||||| |   |||||| |||||||||||||||||| |||||||||||    
T  8678923 tttttattttggacc---ttcatggcatcaaattacaaaatttaaggtactttcg 8678974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 16734105 - 16734174
Alignment:
Q  144 taatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    ||||| ||||||||||||||||| ||||||||| ||||||||||||| ||| ||||| |||||||||||||    
T  16734105 taatattagcgattttcagttta-ccctctgtaaaaaaaattgtttagattccaaccctgtaatttgaaga 16734174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 118 - 317
Target Start/End: Original strand, 49277663 - 49277858
Alignment:
Q  118 aagggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaagannn 217  Q
    ||||||||||| |||| |||||| | ||||| |||||||||||| |||| |||| || | ||||| ||||||| ||| ||||| ||||||||||| |       
T  49277663 aagggttaatacatgtgtacccc-tgtaatattagcgattttcaatttacccct-tgcaaaaaaatttgtttagattccaaccgtgtaatttgaaaatta 49277760  T
Q  218 nnnnattttggatctttttcatgacatcaaattacaaaattttaggtactttcgacat-tgtaacatgagagaatttcagtttaccccctgccatatcat 316  Q
         ||||||| |||   |||| |||||||||||||||||| ||||||||| | | | |||||  || |||||||||| |||||||||||| |||||||    
T  49277761 tttggttttggacctt---catggcatcaaattacaaaatttaaggtacttttgccctctgtaatttgcgagaatttcaatttaccccctgcgatatcat 49277857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 23091934 - 23091898
Alignment:
Q  178 aaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  23091934 aaaaaattgtttagattccaaccttgtaatttgaaga 23091898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 119 - 271
Target Start/End: Complemental strand, 13448 - 13299
Alignment:
Q  119 agggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaaga-nnn 217  Q
    |||||||||||||||||||||||| ||||| ||||||||||  ||||| ||| ||||| ||||| ||||||| ||| |||||||||||||||||||        
T  13448 agggttaatatatgtttaccccctgtaatattagcgatttttggttta-ccccctgtaaaaaaatttgtttagattccaaccttgtaatttgaagatttt 13350  T
Q  218 nnnnattttggatctttttcatgacatcaaattacaaaattttaggtactttcg 271  Q
        |||||||| |   ||||||||||||||||||||||||| |||||||||||    
T  13349 tttgattttggacc---ttcatgacatcaaattacaaaatttaaggtactttcg 13299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 321
Target Start/End: Complemental strand, 26043 - 25844
Alignment:
Q  118 aagggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaagannn 217  Q
    ||||||||||||||||||||||||| ||||| ||||||||| | ||||| |||| |||| |||||||| |||| ||| ||||| | ||||||||||        
T  26043 aagggttaatatatgtttaccccct-taatattagcgatttccggtttacccct-tgtaaaaaaaattatttagattccaaccct-taatttgaaggttt 25947  T
Q  218 nnnnattttggatctttttcatgacatcaaattacaaaattttaggtactttcg-acattgtaacatgagagaatttcagtttacc-ccctgccatatca 315  Q
        |||||||| |||   |||| |||||||||||||||||| |||||||||||  | ||||||  |||||||||||| ||||||| ||||| |||||||    
T  25946 tttgattttggacctt---catggcatcaaattacaaaatttaaggtactttcgccccttgtaatttgagagaatttcggtttaccaccctgtcatatca 25850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 178 - 346
Target Start/End: Complemental strand, 25167159 - 25166992
Alignment:
Q  178 aaaaaattgtttaaatttcaaccttgtaatttgaagannnnnnnattttggatctttttcatgacatcaaattacaaaattttaggtactttcgaca-tt 276  Q
    |||||||| |||| ||| ||||  |||||||||||||       ||||||||||||   |||| |||||||||||||||||| ||||||||||| |  ||    
T  25167159 aaaaaattctttagattccaactgtgtaatttgaagattatttgattttggatctt---catggcatcaaattacaaaatttaaggtactttcgtccctt 25167063  T
Q  277 gtaacatgagagaatttcagtttaccccctgccatatcatcgatatttcattttaccccctt-tcatatca 346  Q
    ||||  |||||||||||| ||||||| || ||||||  |||||||||||| ||||||||||| ||||||||    
T  25167062 gtaatttgagagaatttcggtttacctcccgccataggatcgatatttcagtttacccccttgtcatatca 25166992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 335
Target Start/End: Complemental strand, 9044705 - 9044550
Alignment:
Q  178 aaaaaattgtttaaatttcaaccttgtaatttgaagannnnnnnattttggatctttttcatgacatcaaattacaaaattttaggtactttcgacatt- 276  Q
    ||||||||||||||||| |||||||||||||||||||       |||||||| |||   |||| |||||||||| | ||||| || ||||||| || |      
T  9044705 aaaaaattgtttaaattccaaccttgtaatttgaagattatttgattttggacctt---catggcatcaaattatataatttaagatactttc-acctcc 9044610  T
Q  277 -gtaacatgagagaatttcagtttaccccctgccatatcatcgatatttcattttacccc 335  Q
     ||||  |||||||||||  ||||||||||||||||||||||||||||||| ||||||||    
T  9044609 cgtaatttgagagaattttggtttaccccctgccatatcatcgatatttcagtttacccc 9044550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 345
Target Start/End: Complemental strand, 9662938 - 9662827
Alignment:
Q  235 ttcatgacatcaaattacaaaattttaggtactttcgacat-tgtaacatgagagaatttcagtttaccccctgccatatcatcgatatttcattttacc 333  Q
    ||||||||||||||||||||||||| ||||||||| | |   |||||  |||||||||||||||||||||| || |||||||| |||||||   ||||||    
T  9662938 ttcatgacatcaaattacaaaatttaaggtacttttgccccctgtaatttgagagaatttcagtttaccccttgtcatatcattgatattttggtttacc 9662839  T
Q  334 ccctttcatatc 345  Q
    |||| |||||||    
T  9662838 ccctatcatatc 9662827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 111 - 214
Target Start/End: Complemental strand, 3816829 - 3816726
Alignment:
Q  111 tttttataagggttaatatatgtttaccccc-tataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaattt 209  Q
    |||||| ||||||||||| ||||||| || | | ||||| |||||||||   ||||| ||| ||||| ||||||||||||| ||||||||| ||||||||    
T  3816829 tttttacaagggttaatacatgtttatcctcatgtaatattagcgatttctggtttacccc-ctgtaaaaaaaattgtttagatttcaaccctgtaattt 3816731  T
Q  210 gaaga 214  Q
    |||||    
T  3816730 gaaga 3816726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 33200130 - 33200037
Alignment:
Q  119 agggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    |||||||||| ||||||||||| | ||||| ||||||||| || |||| ||| ||| | ||||||||||||| ||| ||||| |||||||||||||    
T  33200130 agggttaatacatgtttaccccatgtaatattagcgatttccaatttacccc-ctgca-aaaaaattgtttagattacaaccctgtaatttgaaga 33200037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 334901 - 334942
Alignment:
Q  173 tgtacaaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    |||| ||||||||||||| |||| ||||||||||||||||||    
T  334901 tgtataaaaaattgtttagattttaaccttgtaatttgaaga 334942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 320
Target Start/End: Original strand, 18274310 - 18274342
Alignment:
Q  288 gaatttcagtttaccccctgccatatcatcgat 320  Q
    ||||||| |||||||||||||||||||||||||    
T  18274310 gaatttcggtttaccccctgccatatcatcgat 18274342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 20757657 - 20757621
Alignment:
Q  235 ttcatgacatcaaattacaaaattttaggtactttcg 271  Q
    |||||||||||||||||||||| || |||||||||||    
T  20757657 ttcatgacatcaaattacaaaacttaaggtactttcg 20757621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 120 - 320
Target Start/End: Complemental strand, 13437180 - 13436984
Alignment:
Q  120 gggttaatatatgtttacccccta-taatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaagannnn 218  Q
    ||||||||||||||||||||| |  ||||| ||||||||||| ||||| ||||| ||| ||||| ||||||| ||| ||||| |||||||||| ||        
T  13437180 gggttaatatatgtttacccctttgtaatattagcgattttcggttta-ccctc-gtaaaaaaatttgtttagattccaaccgtgtaatttgatgatttt 13437083  T
Q  219 nnnattttggatctttttcatgacatcaaattacaaaattttaggtactttcg-acattgtaacatgagagaatttcagtttaccccctgccatatcatc 317  Q
       |||||||| |||   ||||||||||||||||||||||| |||||||||||  | ||||||  |||||||||||  ||||| |||||| |||||||||    
T  13437082 ttgattttggacctt---catgacatcaaattacaaaatttaaggtactttcgccccttgtaatttgagagaattttggttta-cccctgtcatatcatc 13436987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 235 - 346
Target Start/End: Original strand, 25059913 - 25060025
Alignment:
Q  235 ttcatgacatcaaattacaaaattttaggtactttcgaca-ttgtaacatgagagaatttcagtttaccccctgccatatcatcgatatttcattttacc 333  Q
    |||| |||||||||||||||||||| ||||| ||||| |  ||||||  |||||| ||||| |||||||||||| ||||||||||||||||||  |||||    
T  25059913 ttcaagacatcaaattacaaaatttaaggtattttcgccccttgtaatttgagagcatttcggtttaccccctgtcatatcatcgatatttcaggttacc 25060012  T
Q  334 ccctttcatatca 346  Q
    ||||  |||||||    
T  25060013 ccctgccatatca 25060025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 338
Target Start/End: Complemental strand, 5469658 - 5469439
Alignment:
Q  118 aagggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaagannn 217  Q
    ||||||||||||||||||||| ||| ||||| ||||||||| | |||||     ||||| ||||||||||||| ||| |||||||||||||||||         
T  5469658 aagggttaatatatgtttacctcctttaatattagcgatttccggtttactttcctgtaaaaaaaattgtttagattccaaccttgtaatttgaattttt 5469559  T
Q  218 nnnnattttggatctttttcatgacatcaaattacaaaattttaggtactttcg-acattgtaacatgagagaatttcagttta-ccccctgccatatca 315  Q
        |||||||| |   |||||| ||||||| |||||||||| ||||| ||| |  |  ||||| ||||||||||||| ||||| |||||| | ||||||    
T  5469558 tttgattttggacc---ttcatggcatcaaactacaaaatttaaggtatttttgccccctgtaatatgagagaatttcggtttacccccctactatatca 5469462  T
Q  316 tcgatatttcattttaccccctt 338  Q
    | ||||||||| |||| ||||||    
T  5469461 ttgatatttcaatttatcccctt 5469439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 335
Target Start/End: Original strand, 17890186 - 17890281
Alignment:
Q  242 catcaaattacaaaattttaggtactttcg-acattgtaacatgagagaatttcagtttacc-ccctgccatatcatcgatatttcattttacccc 335  Q
    |||||||||||||||||| |||||||| ||  ||||||||  |||||||||||| ||||||| |  || |||||||||||||||||| ||||||||    
T  17890186 catcaaattacaaaatttaaggtacttccgtccattgtaatttgagagaatttcggtttacctctatgtcatatcatcgatatttcagtttacccc 17890281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 214
Target Start/End: Complemental strand, 44078864 - 44078768
Alignment:
Q  117 taagggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    ||||||||| |||||||||||||| ||||||| ||||| |||    ||||||||  |||| ||| ||||||||| ||| |||||||||||||||||||    
T  44078864 taagggttattatatgtttaccccttataatattagcggtttctgatttatccca-tgtaaaaagaattgtttagattccaaccttgtaatttgaaga 44078768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 326
Target Start/End: Original strand, 22315292 - 22315335
Alignment:
Q  283 tgagagaatttcagtttaccccctgccatatcatcgatatttca 326  Q
    ||||| |||||||||||||||||| |||||||||||||||||||    
T  22315292 tgagaaaatttcagtttacccccttccatatcatcgatatttca 22315335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 320
Target Start/End: Original strand, 14909962 - 14909999
Alignment:
Q  283 tgagagaatttcagtttaccccctgccatatcatcgat 320  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  14909962 tgagaaaatttcagtttaccccctgccatatcatcgat 14909999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 212
Target Start/End: Complemental strand, 7261653 - 7261559
Alignment:
Q  121 ggttaatatatgtttaccccc--tataatagtagcgattttcagtttatccctc-tgtacaaaaaattgtttaaatttcaaccttgtaatttgaa 212  Q
    |||||||||||||||||||||  | ||||| ||||| |||  |||||| ||||| |||| | ||||||||||| ||| ||||| |||||||||||    
T  7261653 ggttaatatatgtttaccccccctgtaatattagcggtttctagtttacccctcctgtaaacaaaattgtttagattccaaccctgtaatttgaa 7261559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 22315142 - 22315240
Alignment:
Q  117 taagggttaatatatgtttac-cccctataatagtagcgattttcagttta-tccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    ||||||||||||||||||||| ||||| ||||| |||||||||   ||||| ||||| |  | ||||||||||||| ||| ||||| |||||||||||||    
T  22315142 taagggttaatatatgtttactcccctgtaatattagcgatttctggtttactccctgt-aaaaaaaaattgtttagattccaaccctgtaatttgaaga 22315240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 1701293 - 1701201
Alignment:
Q  121 ggttaatatatgtttaccccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    ||||||||||||||||| |||| ||||| |||  |||||  |||||||||  |||| ||| | ||||||| ||||||||| |||||||| ||||    
T  1701293 ggttaatatatgtttactccctgtaatattagtaatttttggtttatccc-atgtaaaaatatttgtttagatttcaaccctgtaatttaaaga 1701201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 235 - 324
Target Start/End: Complemental strand, 82399 - 82309
Alignment:
Q  235 ttcatgacatcaaattacaaaattttaggtactttcgacat-tgtaacatgagagaatttcagtttaccccctgccatatcatcgatattt 324  Q
    ||||||| ||||||||||||||||| ||||||||||| |   |||||  |||||||||||| ||||||||||||| |||||||||||||||    
T  82399 ttcatgatatcaaattacaaaatttaaggtactttcgccccatgtaatttgagagaatttcggtttaccccctgctatatcatcgatattt 82309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 34441 - 34530
Alignment:
Q  126 atatatgtttac-cccctataatagtagcgattttcagtttatccctctgtacaaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    |||||||||||| ||||| ||||| ||||||||| | ||||| ||| ||||  ||||| ||||||||||| |||||||||||||| ||||    
T  34441 atatatgtttacacccctgtaatattagcgatttccggtttacccccctgtgaaaaaatttgtttaaattccaaccttgtaattttaaga 34530  T

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Target: scaffold0142; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 35066 - 35030
Alignment:
Q  178 aaaaaattgtttaaatttcaaccttgtaatttgaaga 214  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  35066 aaaaaattgtttagatttcaaccctgtaatttgaaga 35030  T

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