View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_15 (Length: 533)
Name: NF11453A_low_15
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 18 - 529
Target Start/End: Complemental strand, 34349195 - 34348681
Alignment:
| Q |
18 |
acatcaagaaaattgctagctgcacacactacgggacactctctttcaaacactcaatatgaaaaatcaacaactataggtgcagtgtttttctaagcca |
117 |
Q |
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| T |
34349195 |
acattaagaaaattgctagcagcacacactatgtgacactctctttcgaacactcaatatgaaaaatcaacaactacaggtgcagtgtttttctaagcca |
34349096 |
T |
|
| Q |
118 |
tcatggcatgatgat---accactgaaaataaacacaaatgcagccacagtgaatgacaatgaagtctcaaagccaccaaactgtatcatatgcaataat |
214 |
Q |
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| T |
34349095 |
tcatggcatgatgatgataccactgaaaataaacacacatgcagccacaatgaatgacaatgaagtctcaaagccaccaaactgtatcatatgcaataat |
34348996 |
T |
|
| Q |
215 |
aatctttgaaataaagtaagaactcgtttattgaccagcacaacggtcacaatgcaattcatatttaatcatagtgctgtctgtatggtaaattaatgag |
314 |
Q |
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| T |
34348995 |
aatctttgaaataaagtaagaactcgtttattgaccagcacagcggtcacaatgcaattcatatttaatcatagtgctgtctgtatggtaaattaatgag |
34348896 |
T |
|
| Q |
315 |
attaaatatttgtccatatatatgtttttcaccccacgttctcaatatcaaatcttatataagaattgaatgtctgtgaatatagaaacaacgtgctttt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34348895 |
attaaatatttgtccatatatatgtttttcaccccacgttctcaatatcaaatcttatataagaattgaatgtctgtgaatatagaaacaacgtgctttt |
34348796 |
T |
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| Q |
415 |
acatttttataaattgatattaataataagtcacatgctcaaagctcaaaagctaaggttgcatgttctacatgaatacaaaacctaagaatattaatac |
514 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34348795 |
acatttttataaattaatattaataataagtcacatgctcaaagctcaaaagctaaggttgcatgttctacatgaatacaaaacctaagaatattaatac |
34348696 |
T |
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| Q |
515 |
aagtcatataattaa |
529 |
Q |
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| T |
34348695 |
aagtcatataattaa |
34348681 |
T |
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