View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_156 (Length: 341)
Name: NF11453A_low_156
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_156 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 3 - 335
Target Start/End: Complemental strand, 3332434 - 3332102
Alignment:
| Q |
3 |
gaagaccaagaggaagaccagctggatccaaaaacaaaccaaaaccaccgattatcatcacacgtgacagcgcaaacgccttgaaaactcacgtgatgga |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3332434 |
gaagaccaagaggaagaccagctggatccaaaaacaaaccaaaaccaccgattatcatcacacgtgacagcgcaaacgccttgaaaactcacgtgatgga |
3332335 |
T |
|
| Q |
103 |
agttgcagacggttgtgacgttgttgaaagtgtcaacaactttgctagacgccgtcaaagaggcgtttgcatcatgagtgggacagggacggttacaaac |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3332334 |
agttgcagacggttgtgacgttgttgaaagtgtcaacaacttcgctagacgccgtcaaagaggcgtttgcatcatgagtgggacagggacggttacaaac |
3332235 |
T |
|
| Q |
203 |
gtgacactaaggcaaccggcttctcctggggctgttgttacacttcatggaaggttcgagattctttcgctggcgggatcgtttcttccaccacctgctc |
302 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3332234 |
gtgacactaaggcaaccggcttctcctggagctgttgttacacttcatggaaggttcgagattctttcgctggctggatcgtttcttccaccacctgctc |
3332135 |
T |
|
| Q |
303 |
cgcccgctgcttctggtttgaccatatatttag |
335 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
3332134 |
cgcccgctgcttctggtttgaccatatatttag |
3332102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 13212892 - 13212814
Alignment:
| Q |
3 |
gaagaccaagaggaagaccagctggatccaaaaacaaaccaaaaccaccgattatcatcacacgtgacagcgcaaacgc |
81 |
Q |
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|||||||||||||||||||||| || || |||||||||||||||||||| || |||||||| | |||||||| ||||| |
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|
| T |
13212892 |
gaagaccaagaggaagaccagcaggttcgaaaaacaaaccaaaaccacctatcatcatcacgagggacagcgcgaacgc |
13212814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 32803278 - 32803230
Alignment:
| Q |
3 |
gaagaccaagaggaagaccagctggatccaaaaacaaaccaaaaccacc |
51 |
Q |
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|||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
32803278 |
gaagaccaagaggaagaccacctggatccaaaaacagaccaaaaccacc |
32803230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 16578617 - 16578665
Alignment:
| Q |
3 |
gaagaccaagaggaagaccagctggatccaaaaacaaaccaaaaccacc |
51 |
Q |
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|||||||||||||||||||| | || || |||||||||||||||||||| |
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| T |
16578617 |
gaagaccaagaggaagaccacccggttcaaaaaacaaaccaaaaccacc |
16578665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 32809738 - 32809703
Alignment:
| Q |
3 |
gaagaccaagaggaagaccagctggatccaaaaaca |
38 |
Q |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
32809738 |
gaagaccaagaggaagaccacctggatccaaaaaca |
32809703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 46200911 - 46200964
Alignment:
| Q |
11 |
agaggaagaccagctggatccaaaaacaaaccaaaaccaccgattatcatcaca |
64 |
Q |
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|||||| | ||| |||| || |||||||||||||||||||| |||||||||||| |
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| T |
46200911 |
agaggacgtccacctggctcaaaaaacaaaccaaaaccacctattatcatcaca |
46200964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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