View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_175 (Length: 330)
Name: NF11453A_low_175
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_175 |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 324
Target Start/End: Complemental strand, 30708376 - 30708065
Alignment:
| Q |
12 |
atgaagtacagaggtgcaataagaaacttgattgaacttgagggtcttggctgcaccatcatacatgaagtggatgttcacaacatgaatcaacaccatc |
111 |
Q |
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| T |
30708376 |
atgaagtacagaggtgcaataagaaacttgattgaacttgagggtcttggctgcaccatcatgcacgaagtggatgttcacaacatgaatcaacaccatc |
30708277 |
T |
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| Q |
112 |
aactcaaacaccacaannnnnnngatcgaataatctttaattttcctcattctggtttcttccaaaatgaaagtgatgcttgggtgatcgggtaagttaa |
211 |
Q |
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| T |
30708276 |
aactcaaacaccacaatttttttgatcgaataatctttaattttcctcattctggtttcttccaaaatgaaagtgatgcttgggtgatcgggtaagttaa |
30708177 |
T |
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| Q |
212 |
atagagagggtttttatcatgtgtaaattcgtatacattaagaagtttaacatagtaatttctcattttaacttatctattttttacttaaatatataac |
311 |
Q |
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| T |
30708176 |
atagagagggtttttattatgtgtaaattcgcattcgttaagaagtttaacatagtaatttttcattttaacttatatatttttta-ttaaatatataac |
30708078 |
T |
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| Q |
312 |
tttttaatggata |
324 |
Q |
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| T |
30708077 |
tttttaatggata |
30708065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 26 - 167
Target Start/End: Complemental strand, 30727494 - 30727353
Alignment:
| Q |
26 |
tgcaataagaaacttgattgaacttgagggtcttggctgcaccatcatacatgaagtggatgttcacaacatgaatcaacaccatcaactcaaacaccac |
125 |
Q |
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||||||| ||||||| ||||||||| |||||||||||||||||| | || ||||| || |||||||||||||| ||||||||| | ||||| ||| | |
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| T |
30727494 |
tgcaatatcaaacttggatgaacttgaaggtcttggctgcaccatcttgcacgaagtagacgttcacaacatgaaacaacaccattatctcaagcacagc |
30727395 |
T |
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| Q |
126 |
aannnnnnngatcgaataatctttaattttcctcattctggt |
167 |
Q |
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| T |
30727394 |
aatgattttcatcgaataatcttcaattttcctcattctggt |
30727353 |
T |
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