View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_176 (Length: 330)

Name: NF11453A_low_176
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_176
NF11453A_low_176
[»] chr8 (5 HSPs)
chr8 (122-311)||(12587193-12587391)
chr8 (122-225)||(27323205-27323308)
chr8 (124-239)||(35036079-35036198)
chr8 (221-270)||(27324409-27324458)
chr8 (6-40)||(26571815-26571849)
[»] chr1 (1 HSPs)
chr1 (122-311)||(21880191-21880389)
[»] chr7 (3 HSPs)
chr7 (122-311)||(22970236-22970434)
chr7 (6-40)||(22964529-22964563)
chr7 (6-40)||(22972773-22972807)
[»] chr3 (2 HSPs)
chr3 (122-311)||(49602743-49602941)
chr3 (6-40)||(49600887-49600921)
[»] chr6 (3 HSPs)
chr6 (122-269)||(6901002-6901149)
chr6 (271-311)||(6900763-6900803)
chr6 (6-40)||(6901462-6901496)
[»] chr2 (2 HSPs)
chr2 (124-272)||(22329701-22329848)
chr2 (6-40)||(22318686-22318720)
[»] chr5 (1 HSPs)
chr5 (127-272)||(35360367-35360511)


Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 122 - 311
Target Start/End: Original strand, 12587193 - 12587391
Alignment:
Q  122 gcaataaaatagcagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaata 221  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12587193 gcaataaaatagtagtaaagtttaagattgttgaataatctcaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaata 12587292  T
Q  222 tcaacaaggtaataatagatgttaactctcattacaataat---------aaacaaataagtttaaaatcataaaaataaggaagagagtgtacctctt 311  Q
    |||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12587293 tcaacaaggtaataatagatgttaactctcattacaataataaacaaacaaaacaaataagtttaaaatcataaaaataaggaagagagtgtacctctt 12587391  T

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Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 122 - 225
Target Start/End: Original strand, 27323205 - 27323308
Alignment:
Q  122 gcaataaaatagcagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaata 221  Q
    ||||||||||| ||| |||||| |||||| ||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  27323205 gcaataaaataacagcaaagttcaagattattgaataatcctaaataatcatttgtcaaaccctaacaataaagtttacacaatcaacataaattcaata 27323304  T
Q  222 tcaa 225  Q
    ||||    
T  27323305 tcaa 27323308  T

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Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 124 - 239
Target Start/End: Complemental strand, 35036198 - 35036079
Alignment:
Q  124 aataaaatagcagtaaagtttaagattgttgaataatcccaaataatcactta----tcaaaccctaacaataaagtttacacaatcaacataaattcaa 219  Q
    ||||||||||  | |||||| | ||| |||||||||||||||| || ||||||    | |||||||||||||||||||||||| ||||||||||||||||    
T  35036198 aataaaatagtggcaaagttcatgatcgttgaataatcccaaaaaaacacttaattattaaaccctaacaataaagtttacactatcaacataaattcaa 35036099  T
Q  220 tatcaacaaggtaataatag 239  Q
    ||||||||| ||||||||||    
T  35036098 tatcaacaaagtaataatag 35036079  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 221 - 270
Target Start/End: Original strand, 27324409 - 27324458
Alignment:
Q  221 atcaacaaggtaataatagatgttaactctcattacaataataaacaaat 270  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27324409 atcaacaaggtgataatagatgttaactctcattacaataataaacaaat 27324458  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 26571815 - 26571849
Alignment:
Q  6 agtagcaaagataactttaaaagcaaatataccaa 40  Q
    |||| ||||||||||||||||||||||||||||||    
T  26571815 agtatcaaagataactttaaaagcaaatataccaa 26571849  T

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Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 122 - 311
Target Start/End: Original strand, 21880191 - 21880389
Alignment:
Q  122 gcaataaaatagcagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaata 221  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21880191 gcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaattttacacaatcaacataaattcaata 21880290  T
Q  222 tcaacaaggtaataatagatgttaactctcattacaataat---------aaacaaataagtttaaaatcataaaaataaggaagagagtgtacctctt 311  Q
    |||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21880291 tcaacaaggtaataatagatgttaactctcattacaataataaacaaacaaaacaaataagtttaaaatcataaaaataaggaagagagtgtacctctt 21880389  T

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Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 122 - 311
Target Start/End: Complemental strand, 22970434 - 22970236
Alignment:
Q  122 gcaataaaatagcagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaata 221  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||    
T  22970434 gcaataaaatagtagtaaagtttaagattgttgaataatctcaaataatcacttatcaaaccctaacaataaattttttacaatcaacataaattcaata 22970335  T
Q  222 tcaacaaggtaataatagatgttaactctcattacaataataaa---------caaataagtttaaaatcataaaaataaggaagagagtgtacctctt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||    
T  22970334 tcaacaaggtaataatagatgttaactctcattacaataataaacaaacaaaacaaataagtttaaaatcataaaaataaggaagagagtgtacctctt 22970236  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 22964563 - 22964529
Alignment:
Q  6 agtagcaaagataactttaaaagcaaatataccaa 40  Q
    |||| ||||||||||||||||||||||||||||||    
T  22964563 agtatcaaagataactttaaaagcaaatataccaa 22964529  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 22972807 - 22972773
Alignment:
Q  6 agtagcaaagataactttaaaagcaaatataccaa 40  Q
    |||| ||||||||||||||||||||||||||||||    
T  22972807 agtatcaaagataactttaaaagcaaatataccaa 22972773  T

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Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 122 - 311
Target Start/End: Original strand, 49602743 - 49602941
Alignment:
Q  122 gcaataaaatagcagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaata 221  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  49602743 gcaataaaatagtagtagagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttgtacaatcaacataaattcaata 49602842  T
Q  222 tcaacaaggtaataatagatgttaactctcattacaataat---------aaacaaataagtttaaaatcataaaaataaggaagagagtgtacctctt 311  Q
    |||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  49602843 tcaacaaggtaataatagatgttaactctcattacaataataaacaaacaaaacaaataagtttaaaatcatataaataaggaagagagtgtacctctt 49602941  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 49600887 - 49600921
Alignment:
Q  6 agtagcaaagataactttaaaagcaaatataccaa 40  Q
    |||| ||||||||||||||||||||||||||||||    
T  49600887 agtatcaaagataactttaaaagcaaatataccaa 49600921  T

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Target: chr6 (Bit Score: 136; Significance: 6e-71; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 122 - 269
Target Start/End: Complemental strand, 6901149 - 6901002
Alignment:
Q  122 gcaataaaatagcagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaata 221  Q
    |||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6901149 gcaataaaatagtagtaaagtttaatattgttgaataatcctaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaata 6901050  T
Q  222 tcaacaaggtaataatagatgttaactctcattacaataataaacaaa 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6901049 tcaacaaggtaataatagatgttaactctcattacaataataaacaaa 6901002  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 6900803 - 6900763
Alignment:
Q  271 aagtttaaaatcataaaaataaggaagagagtgtacctctt 311  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  6900803 aagtttaaaatcataaaaataaggaagagagtgcacctctt 6900763  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 6901496 - 6901462
Alignment:
Q  6 agtagcaaagataactttaaaagcaaatataccaa 40  Q
    |||| ||||||||||||||||||||||||||||||    
T  6901496 agtatcaaagataactttaaaagcaaatataccaa 6901462  T

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Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 124 - 272
Target Start/End: Original strand, 22329701 - 22329848
Alignment:
Q  124 aataaaatagcagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaatatc 223  Q
    ||||||||||||| ||| || ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22329701 aataaaatagcagcaaaattcaagattgta-aataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaatatc 22329799  T
Q  224 aacaaggtaataatagatgttaactctcattacaataataaacaaataa 272  Q
    |||||  ||||||||||||||||||||||||||||||| ||||||||||    
T  22329800 aacaacttaataatagatgttaactctcattacaataacaaacaaataa 22329848  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 22318686 - 22318720
Alignment:
Q  6 agtagcaaagataactttaaaagcaaatataccaa 40  Q
    |||| ||||||||||||||||||||||||||||||    
T  22318686 agtatcaaagataactttaaaagcaaatataccaa 22318720  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 272
Target Start/End: Original strand, 35360367 - 35360511
Alignment:
Q  127 aaaatagcagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaatatcaac 226  Q
    |||||| ||| ||||||||| ||||||||||||| |||||||| |||| || |||||||||||||||||||  ||| ||||||| || || ||||||  |    
T  35360367 aaaataacagcaaagtttaaaattgttgaataattccaaataaacact-attaaaccctaacaataaagttatcactatcaacaaaagtttaatatcggc 35360465  T
Q  227 aaggtaataatagatgttaactctcattacaataataaacaaataa 272  Q
    |||||||||||| |  ||||||| | ||||  |||| |||||||||    
T  35360466 aaggtaataatataaattaactcacgttactgtaattaacaaataa 35360511  T

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