View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_177 (Length: 329)

Name: NF11453A_low_177
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_177
NF11453A_low_177
[»] chr8 (14 HSPs)
chr8 (6-190)||(30984190-30984374)
chr8 (14-190)||(189774-189950)
chr8 (14-190)||(717378-717554)
chr8 (14-190)||(878485-878661)
chr8 (6-158)||(30210527-30210679)
chr8 (186-317)||(30210955-30211086)
chr8 (186-317)||(30982804-30982935)
chr8 (186-317)||(34774023-34774154)
chr8 (186-317)||(193758-193888)
chr8 (186-317)||(721362-721492)
chr8 (186-317)||(882469-882599)
chr8 (6-111)||(34774315-34774420)
chr8 (186-317)||(44240493-44240622)
chr8 (223-265)||(31778710-31778752)
[»] chr5 (12 HSPs)
chr5 (6-190)||(29542330-29542514)
chr5 (6-173)||(42663489-42663656)
chr5 (6-168)||(3260749-3260911)
chr5 (186-317)||(3260531-3260662)
chr5 (186-317)||(29542015-29542146)
chr5 (186-317)||(42663748-42663879)
chr5 (6-89)||(14082946-14083029)
chr5 (6-89)||(33115089-33115172)
chr5 (186-317)||(27738146-27738275)
chr5 (186-317)||(33232828-33232957)
chr5 (186-313)||(7071619-7071744)
chr5 (258-308)||(32728858-32728908)
[»] chr4 (14 HSPs)
chr4 (6-190)||(49127720-49127904)
chr4 (6-190)||(24037950-24038134)
chr4 (6-190)||(39382846-39383030)
chr4 (6-190)||(18140507-18140690)
chr4 (186-317)||(24035795-24035926)
chr4 (186-317)||(24246918-24247049)
chr4 (6-137)||(31430977-31431108)
chr4 (186-317)||(39382613-39382744)
chr4 (186-317)||(49128029-49128160)
chr4 (6-110)||(24246673-24246777)
chr4 (186-317)||(51833963-51834094)
chr4 (186-317)||(56560879-56561008)
chr4 (186-286)||(52056607-52056705)
chr4 (6-72)||(51834225-51834291)
[»] chr3 (12 HSPs)
chr3 (6-190)||(51128903-51129087)
chr3 (6-190)||(47141290-47141474)
chr3 (6-190)||(52692060-52692244)
chr3 (6-168)||(1527664-1527826)
chr3 (186-317)||(1527879-1528010)
chr3 (186-317)||(38469554-38469685)
chr3 (186-317)||(47140944-47141075)
chr3 (186-317)||(51124964-51125095)
chr3 (186-317)||(52692913-52693044)
chr3 (6-126)||(38469201-38469321)
chr3 (6-94)||(47697132-47697220)
chr3 (8-49)||(48181126-48181167)
[»] chr2 (13 HSPs)
chr2 (6-190)||(40254477-40254661)
chr2 (6-172)||(14379793-14379959)
chr2 (186-317)||(14380478-14380609)
chr2 (186-317)||(31686514-31686645)
chr2 (186-317)||(31787021-31787152)
chr2 (186-317)||(40254881-40255012)
chr2 (186-317)||(2443126-2443257)
chr2 (6-96)||(31686770-31686860)
chr2 (6-89)||(44282627-44282710)
chr2 (6-88)||(31786832-31786914)
chr2 (186-317)||(13896370-13896496)
chr2 (186-317)||(14036987-14037113)
chr2 (6-81)||(2443663-2443738)
[»] chr1 (23 HSPs)
chr1 (6-190)||(27000155-27000339)
chr1 (6-190)||(38843284-38843468)
chr1 (6-190)||(51488384-51488568)
chr1 (6-190)||(50979124-50979308)
chr1 (186-317)||(5271200-5271331)
chr1 (186-317)||(26999985-27000116)
chr1 (186-317)||(38843688-38843819)
chr1 (186-317)||(50978520-50978651)
chr1 (186-317)||(51488069-51488200)
chr1 (189-317)||(15353534-15353662)
chr1 (186-317)||(7592899-7593030)
chr1 (6-173)||(7593122-7593276)
chr1 (186-317)||(27576217-27576348)
chr1 (6-110)||(5271472-5271576)
chr1 (6-90)||(26821515-26821599)
chr1 (6-89)||(36496041-36496124)
chr1 (186-317)||(46407859-46407988)
chr1 (6-89)||(38627671-38627754)
chr1 (186-317)||(35606701-35606830)
chr1 (6-76)||(15353361-15353431)
chr1 (263-317)||(26821785-26821839)
chr1 (9-59)||(27576031-27576081)
chr1 (6-49)||(47655888-47655931)
[»] chr7 (9 HSPs)
chr7 (6-168)||(25341355-25341517)
chr7 (186-317)||(25341171-25341302)
chr7 (186-317)||(31012190-31012321)
chr7 (6-106)||(31012375-31012475)
chr7 (186-317)||(41064854-41064985)
chr7 (194-317)||(12910305-12910426)
chr7 (6-59)||(41064664-41064717)
chr7 (259-308)||(47238756-47238805)
chr7 (217-268)||(40725766-40725817)
[»] chr6 (5 HSPs)
chr6 (6-172)||(30018906-30019072)
chr6 (186-317)||(30019591-30019722)
chr6 (186-317)||(31745911-31746043)
chr6 (186-317)||(21515286-21515415)
chr6 (6-59)||(31746179-31746232)


Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 190
Target Start/End: Complemental strand, 30984374 - 30984190
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30984374 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 30984275  T
Q  106 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30984274 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 30984190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 189774 - 189950
Alignment:
Q  14 ttcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctccaaccgaatt 113  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  189774 ttcctagaatcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctccaaccgaatt 189873  T
Q  114 ttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  189874 ttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 189950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 717378 - 717554
Alignment:
Q  14 ttcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctccaaccgaatt 113  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  717378 ttcctagaatcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctccaaccgaatt 717477  T
Q  114 ttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  717478 ttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 717554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 878485 - 878661
Alignment:
Q  14 ttcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctccaaccgaatt 113  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  878485 ttcctagaatcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctccaaccgaatt 878584  T
Q  114 ttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  878585 ttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 878661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 6 - 158
Target Start/End: Original strand, 30210527 - 30210679
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30210527 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgtcctcattaatttttctaacccttctcca 30210626  T
Q  106 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaat 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30210627 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaat 30210679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 30210955 - 30211086
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30210955 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 30211054  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  30211055 ttcatgatgttagtattgtaataccttatatt 30211086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 30982935 - 30982804
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30982935 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 30982836  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  30982835 ttcatgatgttagtattgtaataccttatatt 30982804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 34774154 - 34774023
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34774154 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 34774055  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  34774054 ttcatgatgttagtattgtaataccttatatt 34774023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 193758 - 193888
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  193758 tcaatattttagtactataatacacattatgttagttttgtgataatattttaatactctattgcactttaaattctattatctatttgtaa-ttttatt 193856  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  193857 ttcatgatgttagtattgtaataccttatatt 193888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 721362 - 721492
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  721362 tcaatattttagtactataatacacattatgttagttttgtgataatattttaatactctattgcactttaaattctattatctatttgtaa-ttttatt 721460  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  721461 ttcatgatgttagtattgtaataccttatatt 721492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 882469 - 882599
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  882469 tcaatattttagtactataatacacattatgttagttttgtgataatattttaatactctattgcactttaaattctattatctatttgtaa-ttttatt 882567  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  882568 ttcatgatgttagtattgtaataccttatatt 882599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 34774420 - 34774315
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34774420 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 34774321  T
Q  106 accgaa 111  Q
    ||||||    
T  34774320 accgaa 34774315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 44240493 - 44240622
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||||  | |||| | ||||| |||||||||||||||||||||||||||||||||    
T  44240493 tcaatattttagtactataatacactttaaattagttttgtaataatatt--agtactttgttgcaatttaaattctattatctatttgtaatttttatt 44240590  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    |||||| | |||||||||||||| ||||||||    
T  44240591 ttcatgctattagtattgtaataacttatatt 44240622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Original strand, 31778710 - 31778752
Alignment:
Q  223 ttgtaataatattttaatactctattgcactttaaattctatt 265  Q
    |||||||||||||||| |||| ||||| |||||||||||||||    
T  31778710 ttgtaataatattttagtactatattgaactttaaattctatt 31778752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 190
Target Start/End: Complemental strand, 29542514 - 29542330
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29542514 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 29542415  T
Q  106 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29542414 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 29542330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 6 - 173
Target Start/End: Original strand, 42663489 - 42663656
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42663489 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 42663588  T
Q  106 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctg 173  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42663589 accgaattttttctttctacagtcttattaaaataaatgttggtgaagagaataacatttattttctg 42663656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 6 - 168
Target Start/End: Complemental strand, 3260911 - 3260749
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3260911 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 3260812  T
Q  106 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttatt 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3260811 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttatt 3260749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 3260662 - 3260531
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3260662 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 3260563  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  3260562 ttcatgatgttagtattgtaataccttatatt 3260531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 29542146 - 29542015
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29542146 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 29542047  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  29542046 ttcatgatgttagtattgtaataccttatatt 29542015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 42663748 - 42663879
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42663748 tcaatattttagtactataatacacattatgttagttttgtaataatattttaataatctattgcactttaaattctattatctatttgtaatttttatt 42663847  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  42663848 ttcatgatgttagtattgtaataccttatatt 42663879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 6 - 89
Target Start/End: Original strand, 14082946 - 14083029
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaattt 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14082946 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaattt 14083029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 6 - 89
Target Start/End: Original strand, 33115089 - 33115172
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaattt 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33115089 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaattt 33115172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 27738275 - 27738146
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||||  | |||| | ||||| |||||||||||||||||||||||||||||||||    
T  27738275 tcaatattttagtactataatacactttaaattagttttgtaataatatt--agtactttgttgcaatttaaattctattatctatttgtaatttttatt 27738178  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    |||||| | |||||||||||||| ||||||||    
T  27738177 ttcatgctattagtattgtaataacttatatt 27738146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 33232828 - 33232957
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||||  | |||| | ||||| |||||||||||||||||||||||||||||||||    
T  33232828 tcaatattttagtactataatacactttaaattagttttgtaataatatt--agtactttgttgcaatttaaattctattatctatttgtaatttttatt 33232925  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    |||||| | |||||||||||||| ||||||||    
T  33232926 ttcatgctattagtattgtaataacttatatt 33232957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 186 - 313
Target Start/End: Complemental strand, 7071744 - 7071619
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||| ||||||||| |||  |||||||||||||||||||  | |||| | ||||| |||||||||||||||||||||||||||||||||    
T  7071744 tcaatattttagtaccataatacactttaaattagttttgtaataatatt--agtactttgttgcaatttaaattctattatctatttgtaatttttatt 7071647  T
Q  286 ttcatgatgttagtattgtaatacctta 313  Q
    |||||| | |||||||||||||| ||||    
T  7071646 ttcatggtattagtattgtaataactta 7071619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 308
Target Start/End: Complemental strand, 32728908 - 32728858
Alignment:
Q  258 attctattatctatttgtaatttttattttcatgatgttagtattgtaata 308  Q
    |||||||||||||||||||| |||||||| | || | ||||||||||||||    
T  32728908 attctattatctatttgtaacttttatttccctggtattagtattgtaata 32728858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 190
Target Start/End: Original strand, 49127720 - 49127904
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49127720 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 49127819  T
Q  106 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49127820 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 49127904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 6 - 190
Target Start/End: Complemental strand, 24038134 - 24037950
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24038134 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgtcctcattaatttttctaacccttctcca 24038035  T
Q  106 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24038034 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 24037950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 6 - 190
Target Start/End: Complemental strand, 39383030 - 39382846
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39383030 agctacaattcctaacttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 39382931  T
Q  106 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39382930 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 39382846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 6 - 190
Target Start/End: Original strand, 18140507 - 18140690
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18140507 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 18140606  T
Q  106 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 190  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18140607 accgaa-tttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 18140690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 24035926 - 24035795
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24035926 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 24035827  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  24035826 ttcatgatgttagtattgtaataccttatatt 24035795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 24246918 - 24247049
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24246918 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 24247017  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  24247018 ttcatgatgttagtattgtaataccttatatt 24247049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 6 - 137
Target Start/End: Complemental strand, 31431108 - 31430977
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31431108 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 31431009  T
Q  106 accgaattttttctttctgcagtcttattaaa 137  Q
    ||||||||||||||||||||||||||||||||    
T  31431008 accgaattttttctttctgcagtcttattaaa 31430977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 39382744 - 39382613
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39382744 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 39382645  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  39382644 ttcatgatgttagtattgtaataccttatatt 39382613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 49128029 - 49128160
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49128029 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 49128128  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  49128129 ttcatgatgttagtattgtaataccttatatt 49128160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 24246673 - 24246777
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24246673 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 24246772  T
Q  106 accga 110  Q
    |||||    
T  24246773 accga 24246777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 51834094 - 51833963
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    |||||||||||||| ||| ||||||||||  ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  51834094 tcaatattttagtattatgatacacattaaattagttttgtaattatattttaatactctgttgcactttaaattctattatctatttgtaatttttatt 51833995  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||| || ||||| |||||||||| ||||||||    
T  51833994 ttcttgctgttaatattgtaataacttatatt 51833963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 56560879 - 56561008
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||||  | |||| | ||||| |||||||||||||||||||||||||||||||||    
T  56560879 tcaatattttagtactataatacactttaaattagttttgtaataatatt--agtactttgttgcaatttaaattctattatctatttgtaatttttatt 56560976  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    |||||| | |||||||||||||| ||||||||    
T  56560977 ttcatgctattagtattgtaataacttatatt 56561008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 186 - 286
Target Start/End: Complemental strand, 52056705 - 52056607
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||| ||| ||||||||| |||  |||||||||||||||||||  | |||| | ||||| |||||||||||||||||||||||||||||||||    
T  52056705 tcaatattttaataccataatacactttaaattagttttgtaataatatt--agtactttgttgcaatttaaattctattatctatttgtaatttttatt 52056608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 51834291 - 51834225
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 72  Q
    |||||||||||||| |||||  |||| |||||||||||| ||||| |||||||| || |||||||||    
T  51834291 agctacaattcctaacttctggcttttctagaatcaattatacactctcaattccatcaattccatc 51834225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 190
Target Start/End: Complemental strand, 51129087 - 51128903
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51129087 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 51128988  T
Q  106 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51128987 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 51128903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 6 - 190
Target Start/End: Complemental strand, 47141474 - 47141290
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47141474 agctacaattcctagcttcttactttcttagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 47141375  T
Q  106 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47141374 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 47141290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 6 - 190
Target Start/End: Original strand, 52692060 - 52692244
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52692060 agctacaattcctaacttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 52692159  T
Q  106 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52692160 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 52692244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 6 - 168
Target Start/End: Original strand, 1527664 - 1527826
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1527664 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccattcctgccctcattaatttttctaacccttctcca 1527763  T
Q  106 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttatt 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1527764 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttatt 1527826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 1527879 - 1528010
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1527879 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 1527978  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  1527979 ttcatgatgttagtattgtaataccttatatt 1528010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 38469554 - 38469685
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38469554 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 38469653  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  38469654 ttcatgatgttagtattgtaataccttatatt 38469685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 47141075 - 47140944
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47141075 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 47140976  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  47140975 ttcatgatgttagtattgtaataccttatatt 47140944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 51125095 - 51124964
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51125095 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 51124996  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  51124995 ttcatgatgttagtattgtaataccttatatt 51124964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 52692913 - 52693044
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52692913 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 52693012  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  52693013 ttcatgatgttagtattgtaataccttatatt 52693044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 6 - 126
Target Start/End: Original strand, 38469201 - 38469321
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38469201 agctacaattcttagcttcttactttcctataatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 38469300  T
Q  106 accgaattttttctttctgca 126  Q
    |||||||||||||||||||||    
T  38469301 accgaattttttctttctgca 38469321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 47697132 - 47697220
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttcta 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47697132 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttcta 47697220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 48181126 - 48181167
Alignment:
Q  8 ctacaattcctagcttcttactttcctagaatcaattctaca 49  Q
    |||||||||||||||| |  ||||||||||||||||||||||    
T  48181126 ctacaattcctagcttttggctttcctagaatcaattctaca 48181167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 190
Target Start/End: Original strand, 40254477 - 40254661
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40254477 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 40254576  T
Q  106 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40254577 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 40254661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 6 - 172
Target Start/End: Original strand, 14379793 - 14379959
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14379793 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 14379892  T
Q  106 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttct 172  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14379893 accgaattttttctttctacagtcttattaaaataaatgttggtgaagagaataacatttattttct 14379959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 14380478 - 14380609
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14380478 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 14380577  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  14380578 ttcatgatgttagtattgtaataccttatatt 14380609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 31686645 - 31686514
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31686645 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 31686546  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  31686545 ttcatgatgttagtattgtaataccttatatt 31686514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 31787021 - 31787152
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31787021 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 31787120  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  31787121 ttcatgatgttagtattgtaataccttatatt 31787152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 40254881 - 40255012
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40254881 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 40254980  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  40254981 ttcatgatgttagtattgtaataccttatatt 40255012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 2443257 - 2443126
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    |||||||||||||| ||| ||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2443257 tcaatattttagtattatgatacacattaaattagttttgtaataatatattaatactctattgcactttaaattctattatctatttgtaatttttatt 2443158  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    |||||| |||||||||||||||| ||||||||    
T  2443157 ttcatgttgttagtattgtaataacttatatt 2443126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 6 - 96
Target Start/End: Complemental strand, 31686860 - 31686770
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaac 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31686860 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaac 31686770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 6 - 89
Target Start/End: Original strand, 44282627 - 44282710
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaattt 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44282627 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaattt 44282710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 31786832 - 31786914
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31786832 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatt 31786914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 13896370 - 13896496
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||  ||| |||| | ||||| |||||||||||||||||||||||||||||||||    
T  13896370 tcaatattttagtactataatacactttaaattagttttgtaataata--ttagtactttgttgcaatttaaattctattatctatttgtaatttttatt 13896467  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    |||    | |||||||||||||| ||||||||    
T  13896468 ttc---ctattagtattgtaataacttatatt 13896496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 14036987 - 14037113
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||  ||| |||| | ||||| |||||||||||||||||||||||||||||||||    
T  14036987 tcaatattttagtactataatacactttaaattagttttgtaataata--ttagtactttgttgcaatttaaattctattatctatttgtaatttttatt 14037084  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    |||    | |||||||||||||| ||||||||    
T  14037085 ttc---ctattagtattgtaataacttatatt 14037113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 2443738 - 2443663
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctc 81  Q
    |||||||||||||||||| |  |||| ||||||||||||||||||||||||||| || ||||||||| ||||||||    
T  2443738 agctacaattcctagcttatgccttttctagaatcaattctacaccctcaattccatcaattccatcactgccctc 2443663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 190
Target Start/End: Complemental strand, 27000339 - 27000155
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27000339 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 27000240  T
Q  106 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27000239 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 27000155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 190
Target Start/End: Original strand, 38843284 - 38843468
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38843284 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 38843383  T
Q  106 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38843384 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 38843468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 190
Target Start/End: Complemental strand, 51488568 - 51488384
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51488568 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 51488469  T
Q  106 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51488468 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 51488384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 6 - 190
Target Start/End: Complemental strand, 50979308 - 50979124
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  50979308 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgacctcattaatttttctaacccttctcca 50979209  T
Q  106 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50979208 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctgcagtcttaactctcaat 50979124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 5271331 - 5271200
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5271331 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 5271232  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  5271231 ttcatgatgttagtattgtaataccttatatt 5271200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 27000116 - 26999985
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27000116 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 27000017  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  27000016 ttcatgatgttagtattgtaataccttatatt 26999985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 38843688 - 38843819
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38843688 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 38843787  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  38843788 ttcatgatgttagtattgtaataccttatatt 38843819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 50978651 - 50978520
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50978651 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 50978552  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  50978551 ttcatgatgttagtattgtaataccttatatt 50978520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 51488200 - 51488069
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51488200 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 51488101  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  51488100 ttcatgatgttagtattgtaataccttatatt 51488069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 189 - 317
Target Start/End: Original strand, 15353534 - 15353662
Alignment:
Q  189 atattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttattttc 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15353534 atattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttattttc 15353633  T
Q  289 atgatgttagtattgtaataccttatatt 317  Q
    |||||||||||||||||||||||||||||    
T  15353634 atgatgttagtattgtaataccttatatt 15353662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 7593030 - 7592899
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7593030 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgtactttaaattctattatctatttgtaatttttatt 7592931  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  7592930 ttcatgatgttagtattgtaataccttatatt 7592899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 6 - 173
Target Start/End: Complemental strand, 7593276 - 7593122
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7593276 agctacaattcctagcttcttactttcctagaatcaattctccaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 7593177  T
Q  106 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttctg 173  Q
    ||||||| |||||||||            |||||||||||||||||||||||||||||||||||||||    
T  7593176 accgaat-ttttctttc------------aaaataaatgttggtgaagagaataacatttattttctg 7593122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 27576217 - 27576348
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27576217 tcaatattttagtactatgatacacattaaattagttttgtaataaaattttaatactctattgcactttaaattctattatctatttgtaatttttatt 27576316  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    |||||  |||||||||||||||| ||||||||    
T  27576317 ttcatactgttagtattgtaataacttatatt 27576348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 5271576 - 5271472
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5271576 agctacaattcctaacttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 5271477  T
Q  106 accga 110  Q
    |||||    
T  5271476 accga 5271472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 26821515 - 26821599
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttt 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26821515 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttt 26821599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 6 - 89
Target Start/End: Complemental strand, 36496124 - 36496041
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaattt 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36496124 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaattt 36496041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 46407859 - 46407988
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||||  | |||| | ||||| |||||||||||||||||||||||||||||||||    
T  46407859 tcaatattttagtactataatacactttaaattagttttgtaataatatt--agtactttgttgcaatttaaattctattatctatttgtaatttttatt 46407956  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    |||||| | |||||||||||||| ||||||||    
T  46407957 ttcatgctattagtattgtaataacttatatt 46407988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 6 - 89
Target Start/End: Original strand, 38627671 - 38627754
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaattt 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38627671 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaattt 38627754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 35606701 - 35606830
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||||  | |||| | ||||| |||||||||||||||||||||||||||||||||    
T  35606701 tcaatattttagtactataatacactttaaattagttttgtaataatatt--agtactttgttgcaatttaaattctattatctatttgtaatttttatt 35606798  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    |||||| | || ||||||||||| | ||||||    
T  35606799 ttcatgctatttgtattgtaataacctatatt 35606830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 15353361 - 15353431
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctg 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15353361 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctg 15353431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 263 - 317
Target Start/End: Original strand, 26821785 - 26821839
Alignment:
Q  263 attatctatttgtaatttttattttcatgatgttagtattgtaataccttatatt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26821785 attatctatttgtaatttttattttcatgatgttagtattgtaataccttatatt 26821839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 27576031 - 27576081
Alignment:
Q  9 tacaattcctagcttcttactttcctagaatcaattctacaccctcaattc 59  Q
    |||||||  |||||||| ||||| |||||||||||||||||||||||||||    
T  27576031 tacaatttttagcttctgacttttctagaatcaattctacaccctcaattc 27576081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 47655931 - 47655888
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctaca 49  Q
    |||||||| ||||||||||| ||||| |||||||||||||||||    
T  47655931 agctacaaatcctagcttctaacttttctagaatcaattctaca 47655888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 6 - 168
Target Start/End: Complemental strand, 25341517 - 25341355
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25341517 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccattcctgccctcattaatttttctaacccttctcca 25341418  T
Q  106 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttatt 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25341417 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttatt 25341355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 25341302 - 25341171
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25341302 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 25341203  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  25341202 ttcatgatgttagtattgtaataccttatatt 25341171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 31012321 - 31012190
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31012321 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 31012222  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  31012221 ttcatgatgttagtattgtaataccttatatt 31012190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 31012475 - 31012375
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31012475 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 31012376  T
Q  106 a 106  Q
    |    
T  31012375 a 31012375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 41064854 - 41064985
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41064854 tcaatattttagtactatgatacacattaaattagttttgtaataatattttaatactctattgcactttaaattctattatctatttctaatttttatt 41064953  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    |||||| | |||||||| ||||| ||||||||    
T  41064954 ttcatgcttttagtattctaataacttatatt 41064985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 194 - 317
Target Start/End: Original strand, 12910305 - 12910426
Alignment:
Q  194 ttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttattttcatgat 293  Q
    ||||||||||||||||| |||  |||||||||||||||||||  | |||| | ||||| ||||||||||||||||||||||||||||||||||||||| |    
T  12910305 ttagtactataatacactttaaattagttttgtaataatatt--agtactttgttgcaatttaaattctattatctatttgtaatttttattttcatgct 12910402  T
Q  294 gttagtattgtaataccttatatt 317  Q
     |||||||||||||| ||||||||    
T  12910403 attagtattgtaataacttatatt 12910426  T

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Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 41064664 - 41064717
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattc 59  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  41064664 agctacaattcctagcttctgacttttctagaatcaattctacaccctcaattc 41064717  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 47238805 - 47238756
Alignment:
Q  259 ttctattatctatttgtaatttttattttcatgatgttagtattgtaata 308  Q
    |||||||||||||||||||||||||||| |||| | ||||||||||||||    
T  47238805 ttctattatctatttgtaatttttatttccatggtattagtattgtaata 47238756  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 268
Target Start/End: Original strand, 40725766 - 40725817
Alignment:
Q  217 ttagttttgtaataatattttaatactctattgcactttaaattctattatc 268  Q
    ||||||||||||| |||||||| |||| |||| |||| ||||||||||||||    
T  40725766 ttagttttgtaatgatattttagtactatattacactataaattctattatc 40725817  T

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Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 6 - 172
Target Start/End: Original strand, 30018906 - 30019072
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttctcca 105  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30018906 agctacaattcctatcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgtcctcattaatttttctaacccttctcca 30019005  T
Q  106 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttct 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30019006 accgaattttttctttctgcagtcttattaaaataaatgttggtgaagagaataacatttattttct 30019072  T

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Target: chr6; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 30019591 - 30019722
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30019591 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 30019690  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||||||||||||||||||||||||||||    
T  30019691 ttcatgatgttagtattgtaataccttatatt 30019722  T

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Target: chr6; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 31746043 - 31745911
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttg-taataatattttaatactctattgcactttaaattctattatctatttgtaatttttat 284  Q
    |||||||||||||||||| ||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31746043 tcaatattttagtactatgatacacattaaattagttttggtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttat 31745944  T
Q  285 tttcatgatgttagtattgtaataccttatatt 317  Q
    ||||||| |||||||||||||||| ||||||||    
T  31745943 tttcatgctgttagtattgtaataacttatatt 31745911  T

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Target: chr6; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 21515415 - 21515286
Alignment:
Q  186 tcaatattttagtactataatacacattatgttagttttgtaataatattttaatactctattgcactttaaattctattatctatttgtaatttttatt 285  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||||  | |||| | ||||| |||||||||||||||||||||||||||||||||    
T  21515415 tcaatattttagtactataatacactttaaattagttttgtaataatatt--agtactttgttgcaatttaaattctattatctatttgtaatttttatt 21515318  T
Q  286 ttcatgatgttagtattgtaataccttatatt 317  Q
    |||||| | |||||||||||||| ||||||||    
T  21515317 ttcatgctattagtattgtaataacttatatt 21515286  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 31746232 - 31746179
Alignment:
Q  6 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattc 59  Q
    |||||||||||||| ||| |  |||| ||||||||||||||||| |||||||||    
T  31746232 agctacaattcctaacttatggcttttctagaatcaattctacatcctcaattc 31746179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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