View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_185 (Length: 325)
Name: NF11453A_low_185
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_185 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 17 - 325
Target Start/End: Original strand, 2838500 - 2838808
Alignment:
| Q |
17 |
catcaagaacatcagactcagtatcataaaaggatctatgcatatcattgcacacttgatccttgtgttgactgttttcctccacctcttctccatggtc |
116 |
Q |
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| T |
2838500 |
catcaagaacatcagactcagtatcataaaaggatctatgcatatcattgcacgcttgatccttgtgttgactgttttcctccacctcttctccatggtc |
2838599 |
T |
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| Q |
117 |
tgcatcagcgcaatctttcttcacatttgatacgatgctttctgcctgtgatggatcatcacaagtttcaaatgaaagtgatggcctataactttcaaat |
216 |
Q |
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| T |
2838600 |
tgcatcagcgcaatctttcttcacatttgatacgatgctttctgcctgtgatggatcatcacaagtttcaaatgaaagtgatggcctataactttcaagt |
2838699 |
T |
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| Q |
217 |
tccttttccaaaaagagattctccttttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagctctttcttcaattaacc |
316 |
Q |
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| T |
2838700 |
tccttttccaaaaagagattctccttttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagctctttcttcaattaacc |
2838799 |
T |
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| Q |
317 |
tctcatatt |
325 |
Q |
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||||||||| |
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| T |
2838800 |
tctcatatt |
2838808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 200 - 325
Target Start/End: Original strand, 2842784 - 2842909
Alignment:
| Q |
200 |
gcctataactttcaaattccttttccaaaaagagattctccttttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagc |
299 |
Q |
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| T |
2842784 |
gcctaaaagtttcaagttccttttccaaaaaaagattttccctttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagaaac |
2842883 |
T |
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| Q |
300 |
tctttcttcaattaacctctcatatt |
325 |
Q |
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| T |
2842884 |
tctttcttcaattaacctctcgtatt |
2842909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 2842522 - 2842573
Alignment:
| Q |
13 |
tggacatcaagaacatcagactcagtatcataaaaggatctatgcatatcat |
64 |
Q |
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| T |
2842522 |
tggacatcaagaacatcagactcagtatcataaaaggagctatgcaaatcat |
2842573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 196
Target Start/End: Original strand, 2842671 - 2842705
Alignment:
| Q |
162 |
ctgtgatggatcatcacaagtttcaaatgaaagtg |
196 |
Q |
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| T |
2842671 |
ctgtgatggatcatcacatgtttcaaatgaaagtg |
2842705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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