View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_186 (Length: 325)
Name: NF11453A_low_186
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_186 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 42814323 - 42814016
Alignment:
| Q |
1 |
gagcaaggagatatcattttggtgaagaataaagcaagtttcaaaaagcacacttatctaccatcttcacatataaagagacattagaacttaactttag |
100 |
Q |
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| T |
42814323 |
gagcaaggagatatcattttggtgaagaataaagcaagtttcaaaaagcacacttatctaccatcttcacatataaagagacattagaacttaactttag |
42814224 |
T |
|
| Q |
101 |
tggcattgaacacttgtatgacttgaaaaacattaccataaagagtaaggctagtttcttttactgaaccgttggagttggtggctaaattattcactca |
200 |
Q |
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| T |
42814223 |
tggcattgaacacttgtatgacttgaaaaacattaccattaagagtaaggctagtttcttttactgaaccgttggagttggtggctaaattattcactca |
42814124 |
T |
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| Q |
201 |
gnnnnnnnnnnnnnngaatcattcttaactataatgacagcaataataatgagggagtttaacatcaaagtcttttatctaactagctggtaccactgta |
300 |
Q |
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| T |
42814123 |
g------aaaaaaaagaatcattcttaactataatgacagcaataataatgagggagtttaacatcaaagtcttttatctaactagctggtaccactgta |
42814030 |
T |
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| Q |
301 |
tagatgtccatctc |
314 |
Q |
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| T |
42814029 |
taaatgtccatctc |
42814016 |
T |
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