View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_190 (Length: 324)
Name: NF11453A_low_190
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_190 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-175; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 7 - 324
Target Start/End: Original strand, 1813256 - 1813573
Alignment:
| Q |
7 |
ctgtggaggtacaaaattcgagtatgtaaaagatactatagtgtgccatgattatcaggagataaaagtccaagagagtacacaggtgctaggtgttggt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1813256 |
ctgtggaggtacaaaattcgagtatgtaaaagatactacagtgtgccatgattatcaggagataaaagtccaagagagtacacaggtgctaggtgttggt |
1813355 |
T |
|
| Q |
107 |
gcgatccctcgttcaattcttgtcatcttgaaggatgaccttgttgatgttgttaaagctggaggtattttcccctcaaactcagtgttgccaaatacta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1813356 |
gcgatccctcgttcaattcttgtcatcttgaaggatgaccttgttgatgttgttaaagctggaggtattttcccctcaaactcagtgttgccaaatacta |
1813455 |
T |
|
| Q |
207 |
gctagcagtgttattgctcagtggagtttgaacaaaccgctattgttccatgatacactacttagtacagaacattgtgaagtagcggttatagcactgt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1813456 |
gctagcagtgttattgctcagtggagtttgaacaaaccgctattgttccatgatacactacttagtacagaacattgtgaagtagcggttatagcactgt |
1813555 |
T |
|
| Q |
307 |
tgtgtagtggaatttgaa |
324 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
1813556 |
tgtgtagcggaatttgaa |
1813573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 266
Target Start/End: Complemental strand, 6626778 - 6626745
Alignment:
| Q |
233 |
tttgaacaaaccgctattgttccatgatacacta |
266 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
6626778 |
tttgaacaaatcgctattgttccatgatacacta |
6626745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 1310132 - 1310200
Alignment:
| Q |
233 |
tttgaacaaaccgctattgttccatgatacactacttagtacagaacattgtgaagtagcggttatagc |
301 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||| |||||||| | |||||||| |||||| |||||| |
|
|
| T |
1310132 |
tttgaacaaattgctattgttccttgatacactatttagtacaatatattgtgaaatagcggctatagc |
1310200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 324
Target Start/End: Complemental strand, 38622938 - 38622847
Alignment:
| Q |
233 |
tttgaacaaaccgctattgttccatgatacactacttagtacagaacattgtgaagtagcggttatagcactgttgtgtagtggaatttgaa |
324 |
Q |
| |
|
|||||| ||| || |||||||||||||||||||| |||| ||| || |||| || |||||| ||||||| |||||| ||| | |||||||| |
|
|
| T |
38622938 |
tttgaataaatcgatattgttccatgatacactatttagcacaaaatgttgtcaaatagcggctatagcattgttgtatagcgaaatttgaa |
38622847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 28976484 - 28976435
Alignment:
| Q |
226 |
agtggagtttgaacaaaccgctattgttccatgatacactacttagtaca |
275 |
Q |
| |
|
|||||| ||| ||||||| |||||| ||||||||||||||| |||||||| |
|
|
| T |
28976484 |
agtggaatttaaacaaactgctatttttccatgatacactatttagtaca |
28976435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 300
Target Start/End: Original strand, 430983 - 431050
Alignment:
| Q |
233 |
tttgaacaaaccgctattgttccatgatacactacttagtacagaacattgtgaagtagcggttatag |
300 |
Q |
| |
|
|||||||||| | |||||||||||| ||| ||||||||||||| || ||||| || |||||| ||||| |
|
|
| T |
430983 |
tttgaacaaatcactattgttccattataaactacttagtacaaaatattgttaaatagcggctatag |
431050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 26275599 - 26275538
Alignment:
| Q |
233 |
tttgaacaaaccgctattgttccatgatacactacttagtacagaacattgtgaagtagcgg |
294 |
Q |
| |
|
|||||||||| ||||||||||||| |||| ||| |||||||| || |||||||| |||||| |
|
|
| T |
26275599 |
tttgaacaaatcgctattgttccaaaatacgctatttagtacaaaatattgtgaaatagcgg |
26275538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 8928458 - 8928378
Alignment:
| Q |
233 |
tttgaacaaaccgctattgttccatgatacactacttagtacagaacattgtgaagtagcggttatagcactgttgtgtag |
313 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| ||| |||||||| || ||| |||| || | | || | ||||||||||||| |
|
|
| T |
8928458 |
tttgaacaaatcgctattgttcgatgatacgctatttagtacaaaatattctgaaataactgctacaacactgttgtgtag |
8928378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University