View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_191 (Length: 323)
Name: NF11453A_low_191
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_191 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 38992535 - 38992233
Alignment:
| Q |
16 |
aacatatggttacactcaattatttcatttttaaaaattattatcagtgtcgatgggtcgatgtccgtatcgaagatcaatgtttgtgttcgtgctacat |
115 |
Q |
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| T |
38992535 |
aacatatggttacactcaattatttcatttttaaaaattattatcagtgtcgatgtgtcgatgtccgtatcgaagatcaatgtttgtgttcgtgctacat |
38992436 |
T |
|
| Q |
116 |
agttttcaactagattctattaacaaaaattgactattttttattgaagtttcaacaatttcattaattatgttatatttacatattttaaacactattt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38992435 |
agttttcaactagattctattaacaaaaattgactattttttattgaagtttcaacaatttcattaattatgttatatttacatattttaaacactattt |
38992336 |
T |
|
| Q |
216 |
taatcattgatatgacgataaaaataagattcttgactattaacgaattggtctaagtggtaaaggatttaaatctcctaagtgaatggtcaaagtttca |
315 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
38992335 |
taatcattgatatgacgataaaaataagattcttgaccattaacgaattggtctaagtggtaaaggatttaaatctcttaaacgaatggtcaaagtttca |
38992236 |
T |
|
| Q |
316 |
gtt |
318 |
Q |
| |
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||| |
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| T |
38992235 |
gtt |
38992233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 22877142 - 22877093
Alignment:
| Q |
17 |
acatatggttacactcaatta-tttcatttttaaaaattattatcagtgt |
65 |
Q |
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|||| |||||||| ||||||| ||||||||||||||||||| |||||||| |
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| T |
22877142 |
acatgtggttacattcaattactttcatttttaaaaattatcatcagtgt |
22877093 |
T |
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