View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_193 (Length: 323)
Name: NF11453A_low_193
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_193 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 3 - 320
Target Start/End: Original strand, 499408 - 499725
Alignment:
| Q |
3 |
cgagttaatcgacgaattggagcaaatgacggaaagactaacaaaagagtttcagattcgttccccaaaagccgaacgtatggtaatttttaatgggaat |
102 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
499408 |
cgagttaatcgacgaattggagcaaatgacggaaagactaacaaaagagtttcagattcgttccgcaaaagccgaacgtatggtaatttttaatgggaat |
499507 |
T |
|
| Q |
103 |
acagattcactgactttgaatattggtcctagaaatgacaatgacgctattcctgaagtggacctaaatcacgaattttttctagtaaattttttacgcg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
499508 |
acagattcactgactttgaatattggtcctagaaatgacaatgacgctattcctgaagtggacctaaatcacgaattttttctagtaaattttttacgcg |
499607 |
T |
|
| Q |
203 |
aaccagattttgatcgagatataattaagggatctatgcgccctctaaggcgtaaaatagcgacaacgaaactttctcaaggaaatggacagccccattc |
302 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
499608 |
aaccagattttgatcgagatataattaagggatctatgcgccctctaaggcgtaaaatagcgacaacgaaactttctcaaggaaatgcacagccccattc |
499707 |
T |
|
| Q |
303 |
ccccattttgttcgagat |
320 |
Q |
| |
|
||||||||| || ||||| |
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| T |
499708 |
ccccatttttttggagat |
499725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 3 - 320
Target Start/End: Original strand, 6924156 - 6924473
Alignment:
| Q |
3 |
cgagttaatcgacgaattggagcaaatgacggaaagactaacaaaagagtttcagattcgttccccaaaagccgaacgtatggtaatttttaatgggaat |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6924156 |
cgagttaatcgacgaattggagcaaatgacggaaagactaacaaaagagtttcagattcgttccgcaaaagccgaacgtatggtaatttttaatgggaat |
6924255 |
T |
|
| Q |
103 |
acagattcactgactttgaatattggtcctagaaatgacaatgacgctattcctgaagtggacctaaatcacgaattttttctagtaaattttttacgcg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
6924256 |
acagattcactgactttgaatattggtcctagaaatgacaatgacgctattcttgaagtggacttaaatcacgaattttttctagtaaattttttacgcg |
6924355 |
T |
|
| Q |
203 |
aaccagattttgatcgagatataattaagggatctatgcgccctctaaggcgtaaaatagcgacaacgaaactttctcaaggaaatggacagccccattc |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
6924356 |
aaccagattttgatcgagatataattaagggatctatgcgccctctaaggcgtaaaatagcgacaacgaaactttctcaaggaaatgcacagccccattc |
6924455 |
T |
|
| Q |
303 |
ccccattttgttcgagat |
320 |
Q |
| |
|
||||||||| || ||||| |
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|
| T |
6924456 |
ccccatttttttggagat |
6924473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 3 - 138
Target Start/End: Original strand, 27529066 - 27529201
Alignment:
| Q |
3 |
cgagttaatcgacgaattggagcaaatgacggaaagactaacaaaagagtttcagattcgttccccaaaagccgaacgtatggtaatttttaatgggaat |
102 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||| ||| ||||||| ||||||||||||||||| || ||||||| |||||||||||||||||| |
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|
| T |
27529066 |
cgagttaatcgacgaattggagcaagtgacgaaaagaataataaaagaggctcagattcgttccccaattaccaaacgtatagtaatttttaatgggaat |
27529165 |
T |
|
| Q |
103 |
acagattcactgactttgaatattggtcctagaaat |
138 |
Q |
| |
|
||| |||||| | ||||||| ||| ||||| |||| |
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|
| T |
27529166 |
acaagttcactaaatttgaatcttgatcctaaaaat |
27529201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 3 - 307
Target Start/End: Original strand, 30831580 - 30831884
Alignment:
| Q |
3 |
cgagttaatcgacgaattggagcaaatgacggaaagactaacaaaagagtttcagattcgttccccaaaagccgaacgtatggtaatttttaatgggaat |
102 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| ||||| |
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|
| T |
30831580 |
cgagttaatcgacgaattagagcaagtgacgaaaagactaacaaaagagactcagattcgttccccagaagccgaacgtatggtaatatttaataggaat |
30831679 |
T |
|
| Q |
103 |
acagattcactgactttgaatattggtcctagaaatgacaatgacgctattcctgaagtggacctaaatcacgaattttttctagtaaattttttacgcg |
202 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||| ||||||||||||| | |
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|
| T |
30831680 |
acagattcactgactttgaatcttggtcctagaaatgacaatgatgctattcctgaactggacctgaatcacgaattttttctactaaattttttacgtg |
30831779 |
T |
|
| Q |
203 |
aaccagattttgatcgagatataattaagggatctatgcgccctctaaggcgtaaaatagcgacaacgaaactttctcaaggaaatggacagccccattc |
302 |
Q |
| |
|
|| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||| |
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|
| T |
30831780 |
aatcagattatgaccgagatataattaagggatctatgcgccctctaaggcgtaaaatagcgacaacgaaacttgttcaaggaactggacaggcccattc |
30831879 |
T |
|
| Q |
303 |
cccca |
307 |
Q |
| |
|
||||| |
|
|
| T |
30831880 |
cccca |
30831884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 96 - 226
Target Start/End: Complemental strand, 47460500 - 47460370
Alignment:
| Q |
96 |
tgggaatacagattcactgactttgaatattggtcctagaaatgacaatgacgctattcctgaagtggacctaaatcacgaattttttctagtaaatttt |
195 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47460500 |
tgggaatacagagtcactgactttgaatattggtcctagaaatgacaatgacgctattcctgaagtggacctaaatcacgaattttttctagtaaatttt |
47460401 |
T |
|
| Q |
196 |
ttacgcgaaccagattttgatcgagatataa |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
47460400 |
ttacgcgaaccagattttgatcgagatataa |
47460370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 7 - 181
Target Start/End: Complemental strand, 28384274 - 28384101
Alignment:
| Q |
7 |
ttaatcgacgaattggagcaaatgacggaaagactaacaaaagagtttcagattcgttccccaaaagccgaacgtatggtaatttttaatgggaatacag |
106 |
Q |
| |
|
||||| || ||| |||||||| ||||||||||| || |||||||| ||| ||||||| || | |||||||||||| |||||||||||| ||||||||| |
|
|
| T |
28384274 |
ttaatagatgaaatggagcaagtgacggaaagattatcaaaagaggctcaaattcgtttcctacgagccgaacgtatagtaatttttaataggaatacag |
28384175 |
T |
|
| Q |
107 |
attcactgactttgaatattggtcctagaaatgacaatgacgctattcctgaagtggacctaaatcacgaatttt |
181 |
Q |
| |
|
||||||| ||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28384174 |
attcactaactttgaatcttggtcctag-aatgacaatgacgctattcctgaactggacctaaatcacgaatttt |
28384101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 11299504 - 11299457
Alignment:
| Q |
229 |
aagggatctatgcgccctctaaggcgtaaaatagcgacaacgaaactt |
276 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||| |||||||| |
|
|
| T |
11299504 |
aagggatctatgcaccctctaaggcgtaaaataacgacttcgaaactt |
11299457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 177 - 307
Target Start/End: Complemental strand, 2912956 - 2912825
Alignment:
| Q |
177 |
attttttctagtaaattttttacgcgaaccagattttgatcgagatataattaagggatctatgcgccctctaaggcgt-aaaatagcgacaacgaaact |
275 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| ||| |||||| |||| |||||| |
|
|
| T |
2912956 |
attttttcaattaaattttttacgcgaaccagattatgaccgagatataattaagggatctatgcaccctctaagtcgtaaaaataacgactttgaaact |
2912857 |
T |
|
| Q |
276 |
ttctcaaggaaatggacagccccattccccca |
307 |
Q |
| |
|
| |||||||| |||||| |||||||||||| |
|
|
| T |
2912856 |
tgttcaaggaactggacattcccattccccca |
2912825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 47448293 - 47448189
Alignment:
| Q |
3 |
cgagttaatcgacgaattggagcaaatgacggaaagactaacaaaagagtttcagattcgttccccaaaagccgaacgtatggtaatttttaatgggaat |
102 |
Q |
| |
|
||||||||||||| ||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
47448293 |
cgagttaatcgacaaattggagcaagtgacagaaagactaacaaaagaggctcagattcgttccccaaaagccaaacg---------ttttaatgggaat |
47448203 |
T |
|
| Q |
103 |
acagattcactgac |
116 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
47448202 |
acagattcactgac |
47448189 |
T |
|
Back To:
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