View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_194 (Length: 323)
Name: NF11453A_low_194
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_194 |
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| [»] scaffold0430 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 9 - 316
Target Start/End: Complemental strand, 51184548 - 51184241
Alignment:
| Q |
9 |
atcagagacagtagatattgatttgtatgaaagaaaagattagacaattaagactagtttggttttataccgcgactttgcaggtttccaagacagtgga |
108 |
Q |
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| T |
51184548 |
atcaaagacagtagatattgatttttatgaaagaaaagattagacaattaagactagtttggttttatactgtgactttgcaggtttccaagacagtaga |
51184449 |
T |
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| Q |
109 |
tattgtaaaggcgaaagggggaaaggttacaagagaaccagggtctgtcaaaggtggctctatagtaactgcttccgttgaagatcctagtggttatagg |
208 |
Q |
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| T |
51184448 |
tattgtaaaggcgaaagggggaaaggttacaagagaaccagggtctgtcaaaggtggctctatagtaactgcttccgttgaagatcctagtggttatagg |
51184349 |
T |
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| Q |
209 |
tttgagcttttggagagaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcgaccttgatcgtgtcatagccttctatgaaaaagtga |
308 |
Q |
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| T |
51184348 |
tttgagcttttggagagaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcgaccttgatcgtgtcatagccttctatgaaaaagtga |
51184249 |
T |
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| Q |
309 |
gtgtattt |
316 |
Q |
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| T |
51184248 |
gtgtattt |
51184241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 25 - 316
Target Start/End: Original strand, 14172579 - 14172870
Alignment:
| Q |
25 |
attgatttgtatgaaagaaaagattagacaattaagactagtttggttttataccgcgactttgcaggtttccaagacagtggatattgtaaaggcgaaa |
124 |
Q |
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| T |
14172579 |
attgatctgtatgaaaggaaagactaaacaattaagactattttggttttatactgcgattttgcaggtttccaagacagtagatattgtaaaggcgaaa |
14172678 |
T |
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| Q |
125 |
gggggaaaggttacaagagaaccagggtctgtcaaaggtggctctatagtaactgcttccgttgaagatcctagtggttataggtttgagcttttggaga |
224 |
Q |
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| T |
14172679 |
gggggaaaggttacaagagaaccagggtctgtcataggtggctctatagtaactgcttccgttgaagatcctagtggttataggtttaagcttttggaga |
14172778 |
T |
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| Q |
225 |
gaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcgaccttgatcgtgtcatagccttctatgaaaaagtgagtgtattt |
316 |
Q |
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| T |
14172779 |
gaagaactactcgtgaacccttatgcaaagtgatgcttcgagtaggtgaccttgatcgtgtcatagccttctatgaaaaagtgagtgtattt |
14172870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 213 - 316
Target Start/End: Original strand, 48010932 - 48011035
Alignment:
| Q |
213 |
agcttttggagagaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcgaccttgatcgtgtcatagccttctatgaaaaagtgagtgt |
312 |
Q |
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| T |
48010932 |
agcttttggggtgaagacctgctcgcgaacccctatgcaaagtgatgcttcaagtaggcggccttgatcgtgtcgtagccttctatgaataagtgagttt |
48011031 |
T |
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| Q |
313 |
attt |
316 |
Q |
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| T |
48011032 |
attt |
48011035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0430 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0430
Description:
Target: scaffold0430; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 89 - 316
Target Start/End: Original strand, 823 - 1050
Alignment:
| Q |
89 |
caggtttccaagacagtggatattgtaaaggcgaaagggggaaaggttacaagagaaccagggtctgtcaaaggtggctctatagtaactgcttccgttg |
188 |
Q |
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| T |
823 |
caggttgccaagacggtaaatattgtaaaggaaaaatggggaaaggttatgagagaactggagcctgttaaagatggttctacagtaactgcttttattg |
922 |
T |
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| Q |
189 |
aagatcctagtggttataggtttgagcttttggagagaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcgaccttgatcgtgtcat |
288 |
Q |
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| T |
923 |
aagatcctagtggtgataggtttgagcttttggggagaagacttactcgtgaacccttatgcaaagtgatgcttcaagcagacaaccttgattgtgtcat |
1022 |
T |
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| Q |
289 |
agccttctatgaaaaagtgagtgtattt |
316 |
Q |
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| T |
1023 |
agccttctatgaaaaagtgagtgtattt |
1050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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