View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_196 (Length: 322)

Name: NF11453A_low_196
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_196
NF11453A_low_196
[»] chr1 (1 HSPs)
chr1 (17-322)||(41734876-41735184)


Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 41735184 - 41734876
Alignment:
Q  17 gacatcaatttaattgcgaaaatgtcttttatcttgtaattcccatttttcactagtgatgggcgatagtcatatattcttcacaccaattcaatatata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41735184 gacatcaatttaattgcgaaaatgtcttttatcttgtaattcccattttgcactagtgatgggcgatagtcatatattcttcacaccaattcaatatata 41735085  T
Q  117 gttggcctaat---cagattggtaatctaccatatgccaaccttggtagagtatttatacacttttaccatccatcttgacatcaccaattcaatctgcc 213  Q
    |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41735084 gttggcctaatgatcagattggtaatctaccatatgccaaccttggtagagtatttatacacttttaccatccatcttgacatcaccaattcaatctgcc 41734985  T
Q  214 actgatcataatatgatgaagcaaaatctattagtgaaaataatcactcttctcccttggcttattcttttcttcattctaacaggtactcataatttgc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41734984 actgatcataatatgatgaagcaaaatctattagtgaaaataatcactcttctcccttggcttattcttttcttcattataacaggtactcataatttgc 41734885  T
Q  314 tagcatctc 322  Q
    |||||||||    
T  41734884 tagcatctc 41734876  T

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