View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_199 (Length: 321)
Name: NF11453A_low_199
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_199 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 7617811 - 7617528
Alignment:
| Q |
1 |
gcttaaccgtaaaaattgtcttgtcttaagttatgtttgtactttgttgtacaaagcaaaacnnnnnnnntggtaattgtgacgtgtagctgcatataag |
100 |
Q |
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| T |
7617811 |
gcttaaccttaaaaattgtctggtcttaatttatgtttgtactttgttgttcaaagcaaaacaaaaaaaatggtaattgttatgtgtagttgcatataag |
7617712 |
T |
|
| Q |
101 |
aaatcaatgatgcatgtgatttcaatgaatgtgtgaagccaatagggtgtgcttttataagcttctgttctgtctttaaagtgnnnnnnnnnccggaaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7617711 |
aaatcaatgatgcatgtgatttcaatgaatgtgtgaagccaatagggtgtgcttttataagcttctgttctgtctttaaagtg--aaaaaaaccggaaag |
7617614 |
T |
|
| Q |
201 |
tagcagcgaaattggctttacactatggaaaaacagtgcactttgctaattatatttagtttatacttcaaaataaattaactaac |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7617613 |
tagcagcgaaattggctttacactatggaaaaacagtgcactttgctaattatatttagtttatacttcaaaataaattaactaac |
7617528 |
T |
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