View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_20 (Length: 518)
Name: NF11453A_low_20
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_20 |
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| [»] scaffold0110 (3 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 431; Significance: 0; HSPs: 3)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 20 - 516
Target Start/End: Original strand, 28928 - 29430
Alignment:
| Q |
20 |
atgcctaatccgaggagtatccgtcatgactc---tcttacaagtaattaacccaatcacaaaactggtaaagcatatgtgtccgttttccttctgctgt |
116 |
Q |
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|||||||||||| ||||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28928 |
atgcctaatccggggagtgtccgttatgactcatttgttacaagtaattaacccaatcacaaaactggtaaagcatatgtgtccgttttccttctgctgt |
29027 |
T |
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| Q |
117 |
atgtaaacccctaaattaaccttgagatcaaattggttaagcactttttaaaaattaaaatgttaaatattttattgtttcaatttataacagggattgt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29028 |
atgtaaacccctaaattaaccttgagatcaaattggttaagcacttttttaaaattaaaatgttaaatattttattgtttcaatttataacagggattgt |
29127 |
T |
|
| Q |
217 |
cgcaaataatggcacaggagaagtttctgttgatcaatatcatcgctacaaagtaagcacctccaaagcttaaacacattagaaatttaattgaagttac |
316 |
Q |
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| T |
29128 |
cgcaaataatggcacaggagaagtttctgttgatcaatatcatcgctacaaagtaagcacctccaaagcttaaacacattagaaatttaattgaagttac |
29227 |
T |
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| Q |
317 |
ataacttttgtcacaagcaatccaaaatccttagtatgaac---acatttaacttgccaaataacatattatataatgtgcatttgatcatatatatgtc |
413 |
Q |
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| T |
29228 |
ataacttttgtcacaattaatccaaaatccttagtatgaaccttacatttaacttgccaaataacatattatataatgtgcatttgatcatatatatgtg |
29327 |
T |
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| Q |
414 |
tgtggccgcgcgcgcgtgtgagctcaagtatgttcaatttgacaggaagatatagatctcatcgcaaagctaaattttgatcaataccggatgtccatct |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||| |
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| T |
29328 |
tgtggccgcgcgcgcgtgtgagctcaagtatgttcaatttgacaggaagatatagatctcatcgcaaagctaaattttgatcaataccggttctcaatct |
29427 |
T |
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| Q |
514 |
cat |
516 |
Q |
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||| |
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| T |
29428 |
cat |
29430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 187 - 516
Target Start/End: Original strand, 12236 - 12565
Alignment:
| Q |
187 |
tttattgtttcaatttataacagggattgtcgcaaataatggcacaggagaagtttctgttgatcaatatcatcgctacaaagtaagcacctccaaagct |
286 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| |
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| T |
12236 |
tttattggttcaattcataacagggattgtcgcaaataatggcacaggagaagtttctgttgatcaatatcatcgctacaaagtaagcgcctttaatgct |
12335 |
T |
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| Q |
287 |
taaacacattagaaatttaattgaagttacataacttttgtcacaagcaatccaaaatccttagtatgaac---acatttaacttgccaaataacatatt |
383 |
Q |
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| T |
12336 |
taaacacattagaaatttaattgaagttacataacttttgtcagaagcaatccaaaatccttagtatgaaccttacatttaacttgccaaataacatatt |
12435 |
T |
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| Q |
384 |
atataatgtgcatttgatcatatatatgtctgtggccgcgcgcgcgtgtgagctcaagtatgttcaatttgacaggaagatatagatctcatcgcaaagc |
483 |
Q |
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| T |
12436 |
atataatgtgcatttgatcatatatatgtctgtg---gcgcgcgcgtgtgagctcaagtatgttcaatttgacaggaagatatagatctcatcgcaaagc |
12532 |
T |
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| Q |
484 |
taaattttgatcaataccggatgtccatctcat |
516 |
Q |
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| T |
12533 |
taaattttgatcaataccggttctcaatctcat |
12565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 187 - 516
Target Start/End: Original strand, 19973 - 20302
Alignment:
| Q |
187 |
tttattgtttcaatttataacagggattgtcgcaaataatggcacaggagaagtttctgttgatcaatatcatcgctacaaagtaagcacctccaaagct |
286 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| |
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| T |
19973 |
tttattggttcaattcataacagggattgtcgcaaataatggcacaggagaagtttctgttgatcaatatcatcgctacaaagtaagcgcctttaatgct |
20072 |
T |
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| Q |
287 |
taaacacattagaaatttaattgaagttacataacttttgtcacaagcaatccaaaatccttagtatgaac---acatttaacttgccaaataacatatt |
383 |
Q |
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| T |
20073 |
taaacacattagaaatttaattgaagttacataacttttgtcagaagcaatccaaaatccttagtatgaaccttacatttaacttgccaaataacatatt |
20172 |
T |
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| Q |
384 |
atataatgtgcatttgatcatatatatgtctgtggccgcgcgcgcgtgtgagctcaagtatgttcaatttgacaggaagatatagatctcatcgcaaagc |
483 |
Q |
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| T |
20173 |
atataatgtgcatttgatcatatatatgtctgtg---gcgcgcgcgtgtgagctcaagtatgttcaatttgacaggaagatatagatctcatcgcaaagc |
20269 |
T |
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| Q |
484 |
taaattttgatcaataccggatgtccatctcat |
516 |
Q |
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| T |
20270 |
taaattttgatcaataccggttctcaatctcat |
20302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 172 - 278
Target Start/End: Original strand, 36575407 - 36575513
Alignment:
| Q |
172 |
taaaatgttaaatattttattgtttcaatttataacagggattgtcgcaaataatggcacaggagaagtttctgttgatcaatatcatcgctacaaagta |
271 |
Q |
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||||||||||| |||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||| | |||||| |
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| T |
36575407 |
taaaatgttaagtattttattgtttcaattggtaacaggtattgtcacaaataatggcacaggagaagtttatgttgatcaatatcatcgcaataaagta |
36575506 |
T |
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| Q |
272 |
agcacct |
278 |
Q |
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||||||| |
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| T |
36575507 |
agcacct |
36575513 |
T |
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Back To:
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