View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_206 (Length: 315)
Name: NF11453A_low_206
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_206 |
 | |
|
| [»] scaffold0491 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 15)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 298
Target Start/End: Complemental strand, 2338668 - 2338377
Alignment:
| Q |
7 |
ttaacggtgtaagctctgtgacgaaactcttcaacacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaac |
106 |
Q |
| |
|
|||| |||| || ||||| ||| ||||||| |||||| |||||| |||||||| || ||||||||||||||||||| ||||||| ||||| ||||| |
|
|
| T |
2338668 |
ttaatggtgcaatctctgggacaaaactctgtgacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaac |
2338569 |
T |
|
| Q |
107 |
acgaattatgtcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2338568 |
acgaattatgtcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagc |
2338469 |
T |
|
| Q |
207 |
gatgacagtatatcaccagggtgtcttcctattaaagtttcaagtgccactactccaaagctatatacatcacacttttcactcacaaccat |
298 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
2338468 |
tatgatagtatatcaccagggtgtcttcccattaaagtttcaagtgccactactccaaaactatatacatcgcacttttcactcacaaccat |
2338377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 298
Target Start/End: Complemental strand, 2330807 - 2330521
Alignment:
| Q |
12 |
ggtgtaagctctgtgacgaaactcttcaacacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaa |
111 |
Q |
| |
|
|||| ||||||| |||| ||||||| |||||| |||||| |||||||| || ||||||||||||||||||| ||||||| ||||| |||||||||| |
|
|
| T |
2330807 |
ggtgcaagctctatgacaaaactctgtgacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaa |
2330708 |
T |
|
| Q |
112 |
ttatgtcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatga |
211 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2330707 |
ttatgtccagtaaaacctttacattatttggaagtgggagacgttggtctaatacttcacataatttcatcccttgagtcgatgctaactgaagtgatga |
2330608 |
T |
|
| Q |
212 |
cagtatatcaccagggtgtcttcctattaaagtttcaagtgccactactccaaagctatatacatcacacttttcactcacaaccat |
298 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
2330607 |
cagtatatcaccagggtgtcttcccattaaagtttcaagtgccacaactccaaaactatatacatcgcacttttcactcacaaccat |
2330521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 43 - 300
Target Start/End: Complemental strand, 2322162 - 2321905
Alignment:
| Q |
43 |
cacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatttgg |
142 |
Q |
| |
|
|||| |||||| |||||||||| ||| |||||||||||||| |||||||| | | ||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
2322162 |
cacatttcattgttggtcgagagaaaggattgagatttaagcaagcaaatgctattgtggcaacacgaattatgtcaagtaaaaccatcacattattcgg |
2322063 |
T |
|
| Q |
143 |
aagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctattaaa |
242 |
Q |
| |
|
|||| | ||||| |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2322062 |
aagtagaagacgttggtctaatacttcacataacttaatgccttgagttgatgctaactgaagtgatgacagtatatcaccagggtgtcttcccattaaa |
2321963 |
T |
|
| Q |
243 |
gtttcaagtgccactactccaaagctatatacatcacacttttcactcacaaccatag |
300 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2321962 |
gtttcaagtgccacaactccaaagctatatacatcgcacttttcactcacaaccatag |
2321905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 76 - 300
Target Start/End: Original strand, 3954500 - 3954724
Alignment:
| Q |
76 |
gatttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataa |
175 |
Q |
| |
|
|||||||||||||| |||| |||||| ||||| ||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3954500 |
gatttaagcatgcagatgctactacaacaacatgaattatgtcaagtaaaactttcacatcatttggaagtgggagacgttggtctaatacttcacataa |
3954599 |
T |
|
| Q |
176 |
tttcatgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctattaaagtttcaagtgccactactccaaagctatataca |
275 |
Q |
| |
|
||| ||| ||||||| |||| ||| ||||||||||||| ||| || | || | |||||| | |||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
3954600 |
tttgatgtcttgagttgatgttaattgaagtgatgacaatatttcctcgggatatcttcccactaaaatttcaagtgccactactccaaaactatataca |
3954699 |
T |
|
| Q |
276 |
tcacacttttcactcacaaccatag |
300 |
Q |
| |
|
||||| |||||||| |||||||||| |
|
|
| T |
3954700 |
tcacatttttcacttacaaccatag |
3954724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 56 - 305
Target Start/End: Complemental strand, 1089490 - 1089241
Alignment:
| Q |
56 |
tggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatttggaagtgggagacgc |
155 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||| || || |||||| ||||||||||| | | | | | | ||| |||||||||| ||||| |
|
|
| T |
1089490 |
tggtcgagaacgaggattgagatttaagcatgcaaatgctaccacggcaacatgaattatgtcatggatagctatttctttacttggaagtggaagacgt |
1089391 |
T |
|
| Q |
156 |
tggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctattaaagtttcaagtgcca |
255 |
Q |
| |
|
||||||||||||| ||||||||| || | ||| ||||||| | | ||||| ||||||| |||||| ||||||| ||||| | ||||||||||||||||| |
|
|
| T |
1089390 |
tggtctaatacttgacataatttgatactttgtgtcgatgttgattgaagggatgacaatatatcttcagggtgccttccaactaaagtttcaagtgcca |
1089291 |
T |
|
| Q |
256 |
ctactccaaagctatatacatcacacttttcactcacaaccatagaataa |
305 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
1089290 |
ctacaccaaaactatatacatcacacttttcactcacagccatagtataa |
1089241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 7 - 300
Target Start/End: Original strand, 1556679 - 1556972
Alignment:
| Q |
7 |
ttaacggtgtaagctctgtgacgaaactcttcaacacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaac |
106 |
Q |
| |
|
|||| |||||||| || ||||| ||||| | |||||| |||||| ||||||||| |||| |||| |||||||||||||||||| || || |||| |
|
|
| T |
1556679 |
ttaatggtgtaagttcagtgacaaaactttgtgacacacgtttcattgttggtcgagaatgaggattgatatttaagcatgcaaatgcaaccacgacaac |
1556778 |
T |
|
| Q |
107 |
acgaattatgtcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagt |
206 |
Q |
| |
|
| ||||||||||| ||| ||| | |||||||||||||||| ||||||||||||||||||| ||||| ||| | | | | ||||||| | |||||||| |
|
|
| T |
1556779 |
atgaattatgtcacgtataactatgtcattatttggaagtggaagacgctggtctaatacttgacatagtttgacacttcgtgtcgatgttgactgaagt |
1556878 |
T |
|
| Q |
207 |
gatgacagtatatcaccagggtgtcttcctattaaagtttcaagtgccactactccaaagctatatacatcacacttttcactcacaaccatag |
300 |
Q |
| |
|
|||||||||| ||| ||||| || ||||| | ||||||||||||||| || || ||||| |||||| |||||||||||||| |||||||||||| |
|
|
| T |
1556879 |
gatgacagtaaatctccaggatgccttccaactaaagtttcaagtgctacaacaccaaaactatatgcatcacacttttcattcacaaccatag |
1556972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 7 - 292
Target Start/End: Complemental strand, 1597292 - 1597007
Alignment:
| Q |
7 |
ttaacggtgtaagctctgtgacgaaactcttcaacacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaac |
106 |
Q |
| |
|
|||| ||||||||||| ||||| ||||| | |||||| |||||| ||||||||| ||||| | | | |||||||||||||||| |||| ||||| |
|
|
| T |
1597292 |
ttaatggtgtaagctcggtgacaaaactttgtgacacacgtttcattgttggtcgagaacgaggatcaatagttaagcatgcaaatgcaactatggcaac |
1597193 |
T |
|
| Q |
107 |
acgaattatgtcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagt |
206 |
Q |
| |
|
| ||||||||| | ||| ||| || |||||||||||||||| ||||| ||||||||||||| ||||| ||| | | ||| ||||||| | | |||||| |
|
|
| T |
1597192 |
atgaattatgtgacgtataactatctcattatttggaagtggaagacgttggtctaatacttgacatagtttgagactttgtgtcgatgatgattgaagt |
1597093 |
T |
|
| Q |
207 |
gatgacagtatatcaccagggtgtcttcctattaaagtttcaagtgccactactccaaagctatatacatcacacttttcactcac |
292 |
Q |
| |
|
||||||| || ||| |||||||| ||||| | |||||||||||||||||| || ||||||||||||||||||||||||||| |||| |
|
|
| T |
1597092 |
gatgacaataaatccccagggtgccttccaactaaagtttcaagtgccaccacgccaaagctatatacatcacacttttcattcac |
1597007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 40 - 300
Target Start/End: Original strand, 1549892 - 1550152
Alignment:
| Q |
40 |
acacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatt |
139 |
Q |
| |
|
||||||| |||||| ||||||||||||||| ||||||||||| ||||||||||| || || ||||| ||||||||||| ||| ||| | ||||||| |
|
|
| T |
1549892 |
acacacatttcattgttggtcgagagcgaggattgagatttaaacatgcaaatgctaccacggcaacttgaattatgtcacgtataactatttcattatt |
1549991 |
T |
|
| Q |
140 |
tggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctatt |
239 |
Q |
| |
|
||||||||| | ||| ||||||||||||| ||||||||| || | ||| ||||||| | |||||||||| || |||||| ||||||| |||| | | |
|
|
| T |
1549992 |
tggaagtggaatacgttggtctaatacttgacataatttgatactttgtgtcgatggagattgaagtgatgccaatatatcctcagggtgctttccaact |
1550091 |
T |
|
| Q |
240 |
aaagtttcaagtgccactactccaaagctatatacatcacacttttcactcacaaccatag |
300 |
Q |
| |
|
|| ||||||||||||||||| ||||| ||||||||||||||||| ||| ||||| |||||| |
|
|
| T |
1550092 |
aatgtttcaagtgccactacaccaaaactatatacatcacacttctcattcacagccatag |
1550152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 7 - 298
Target Start/End: Complemental strand, 1605266 - 1604975
Alignment:
| Q |
7 |
ttaacggtgtaagctctgtgacgaaactcttcaacacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaac |
106 |
Q |
| |
|
|||| ||||| ||||| ||||| ||||| | |||||| |||||| ||||||||| ||||| |||| |||||||||||||||||| || || ||||| |
|
|
| T |
1605266 |
ttaatggtgtgagctccgtgacaaaactttgtgacacacgtttcattgttggtcgagaacgaggattgatatttaagcatgcaaatgcaaccacggcaac |
1605167 |
T |
|
| Q |
107 |
acgaattatgtcaagtaaaaccttca-cattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaag |
205 |
Q |
| |
|
| ||||||||||| ||| ||| | || | |||||||||||||| ||||||||||||||||||| ||||| ||| | | ||| ||||| | | ||||| |
|
|
| T |
1605166 |
atgaattatgtcacgtataac-tacatcgttatttggaagtggaagacgctggtctaatacttgacatagtttgacactttgtgtcgaatttgattgaag |
1605068 |
T |
|
| Q |
206 |
tgatgacagtatatcaccagggtgtcttcctattaaagtttcaagtgccactactccaaagctatatacatcacacttttcactcacaaccat |
298 |
Q |
| |
|
|||||||| |||||| ||||||| ||||| | ||||| ||||||||||||||| ||||| ||||||||||||||||||||| ||||| |||| |
|
|
| T |
1605067 |
tgatgacaatatatcctcagggtgccttccaactaaagcttcaagtgccactacaccaaaactatatacatcacacttttcattcacagccat |
1604975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 78 - 300
Target Start/End: Complemental strand, 3853449 - 3853227
Alignment:
| Q |
78 |
tttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatt |
177 |
Q |
| |
|
||||| ||||||||||| || |||||||| |||| |||| |||| ||||| || ||||||||||| || ||||||| | ||||| |||||||| || || |
|
|
| T |
3853449 |
tttaaacatgcaaatgctacgacagcaacctgaataatgtgaagtgaaaccatctcattatttggacgttggagacgtttgtctagtacttcacgtagtt |
3853350 |
T |
|
| Q |
178 |
tcatgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctattaaagtttcaagtgccactactccaaagctatatacatc |
277 |
Q |
| |
|
| ||| ||||||| |||| ||| ||||||||||||| ||| || |||| |||||||| | |||| |||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
3853349 |
tgatgtcttgagttgatgttaattgaagtgatgacaatatttcctcaggatgtcttcccaataaaatttcaagtgccattaccccaaaactatatacatc |
3853250 |
T |
|
| Q |
278 |
acacttttcactcacaaccatag |
300 |
Q |
| |
|
|||||||||||| |||||||||| |
|
|
| T |
3853249 |
acacttttcacttacaaccatag |
3853227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 300
Target Start/End: Original strand, 1540636 - 1540927
Alignment:
| Q |
9 |
aacggtgtaagctctgtgacgaaactcttcaacacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacac |
108 |
Q |
| |
|
|||||||||||||| ||||| ||||| | |||||| |||||| ||||||||| ||||| ||| |||||||||||||||||| || | | |||| |
|
|
| T |
1540636 |
aacggtgtaagctcggtgacaaaactttgtgacacacgtttcattgttggtcgagaacgaggattgccatttaagcatgcaaatgctaccagggaaacat |
1540735 |
T |
|
| Q |
109 |
gaattatgtcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtga |
208 |
Q |
| |
|
||||||||||| ||| ||| | |||||||||||||||| ||||| ||||||||||||| || || ||| | | | ||||||| | | |||||||| |
|
|
| T |
1540736 |
gaattatgtcacgtataactatgtcattatttggaagtggaagacgttggtctaatacttgacgtagtttgacacttcttgtcgatgttgattgaagtga |
1540835 |
T |
|
| Q |
209 |
tgacagtatatcaccagggtgtcttcctattaaagtttcaagtgccactactccaaagctatatacatcacacttttcactcacaaccatag |
300 |
Q |
| |
|
||||| || ||| |||||||| ||||| | |||||||||||||| |||||| ||||| ||||||||||||||||||||| ||||| |||||| |
|
|
| T |
1540836 |
tgacaataaatccccagggtgccttccaactaaagtttcaagtgtcactacaccaaaactatatacatcacacttttcattcacagccatag |
1540927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 56 - 298
Target Start/End: Complemental strand, 1106830 - 1106588
Alignment:
| Q |
56 |
tggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatttggaagtgggagacgc |
155 |
Q |
| |
|
||||||||| ||||| |||| |||||||||||||||||| || || |||||| ||||||||||| ||| ||| | |||||||||||||| |||||| |
|
|
| T |
1106830 |
tggtcgagaacgaggattgatatttaagcatgcaaatgcaaccacggcaacatgaattatgtcacgtataactacgtcgttatttggaagtggaagacgc |
1106731 |
T |
|
| Q |
156 |
tggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctattaaagtttcaagtgcca |
255 |
Q |
| |
|
||||||||||||| ||||| ||| | | ||| | ||| | | ||||||||||||| |||||| ||||||| ||||| | ||||| ||||||||||| |
|
|
| T |
1106730 |
tggtctaatacttgacatagtttgacactttgtggcgaatttgattgaagtgatgacaatatatcctcagggtgccttccaactaaagcttcaagtgcca |
1106631 |
T |
|
| Q |
256 |
ctactccaaagctatatacatcacacttttcactcacaaccat |
298 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||| ||||| |||| |
|
|
| T |
1106630 |
ctacaccaaaactatatacatcacacttttcattcacagccat |
1106588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 42 - 272
Target Start/End: Original strand, 1563970 - 1564200
Alignment:
| Q |
42 |
acacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatttg |
141 |
Q |
| |
|
||||| |||||| ||||||||| ||||| ||||||||||| | ||||||||| || || |||||| ||||||||||| ||| ||| | | ||||||| |
|
|
| T |
1563970 |
acacatttcattgttggtcgagaacgaggattgagatttaaacttgcaaatgctaccacggcaacatgaattatgtcacgtataactatttcgttatttg |
1564069 |
T |
|
| Q |
142 |
gaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctattaa |
241 |
Q |
| |
|
||||| | ||||| ||||||||||||| ||||||||| || | ||| ||||||| | | ||||||||||||| |||||| ||||| | ||||| | ||| |
|
|
| T |
1564070 |
gaagtcgaagacgttggtctaatacttgacataatttgatactttgtgtcgatgttgattgaagtgatgacaatatatctccaggtttccttccaactaa |
1564169 |
T |
|
| Q |
242 |
agtttcaagtgccactactccaaagctatat |
272 |
Q |
| |
|
||||||||||| |||||| ||||| |||||| |
|
|
| T |
1564170 |
agtttcaagtgtcactacaccaaaactatat |
1564200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 220
Target Start/End: Complemental strand, 2335308 - 2335141
Alignment:
| Q |
56 |
tggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatttggaagtgggagacgc |
155 |
Q |
| |
|
||||| ||||| ||| ||||||||||||||||||||||| || | |||||||||||||||||||||||||| ||||||||||||||| | || || | |
|
|
| T |
2335308 |
tggtcaagagcaaggattgagatttaagcatgcaaatgctacaatgacaacacgaattatgtcaagtaaaaccatcacattatttggaaataggggatgt |
2335209 |
T |
|
| Q |
156 |
tggtctaatacttcaca---taatttcatgccttgagtcgatgctaactgaagtgatgacagtatatc |
220 |
Q |
| |
|
|| |||||||||||||| |||||||||||| |||| ||||| || ||||||||||||| |||||| |
|
|
| T |
2335208 |
tgttctaatacttcacataataatttcatgccgagagttgatgcaaattgaagtgatgacaatatatc |
2335141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 180
Target Start/End: Complemental strand, 2326455 - 2326313
Alignment:
| Q |
40 |
acacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattat--gtcaagtaaaaccttcacatta |
137 |
Q |
| |
|
||||||| |||||| |||||||||| ||| |||||||||||| |||||||||| |||| |||||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
2326455 |
acacacatttcattgttggtcgagagaaaggattgagatttaagtatgcaaatgctactaaggcaacacgaattatatgtcaagtaaaaccatcatatta |
2326356 |
T |
|
| Q |
138 |
tttggaagtgggagacgctggtctaatacttcacataatttca |
180 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
2326355 |
ttcagaagtgggagacgttggtctaatacttcacataacttca |
2326313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 5296 - 5579
Alignment:
| Q |
17 |
aagctctgtgacgaaactcttcaacacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatg |
116 |
Q |
| |
|
|||||| ||||| ||||| | | ||||||| |||||| ||||||||| ||||| |||| ||||||||||||||| || || || |||| | |||||||| |
|
|
| T |
5296 |
aagctcggtgacaaaactttgcgacacacatttcattgttggtcgagaacgaggattgacatttaagcatgcaaaggcaacaacggcaaaatgaattatg |
5395 |
T |
|
| Q |
117 |
tcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagta |
216 |
Q |
| |
|
| | ||| |||| | |||||||||||||||| ||||||||||||||||||| ||||| ||| | | ||| ||||||| | | ||||||||||||| || |
|
|
| T |
5396 |
ttacgtataaccatttcattatttggaagtggaagacgctggtctaatacttgacatagtttgacactttgtgtcgatgttgattgaagtgatgacaata |
5495 |
T |
|
| Q |
217 |
tatcaccagggtgtcttcctattaaagtttcaagtgccactactccaaagctatatacatcacacttttcactcacaaccatag |
300 |
Q |
| |
|
||| |||||||| ||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| |||||| |
|
|
| T |
5496 |
aatccccagggtgccttccagctaaagtttcaagtgccactacaccaaaactatatacatcacacttttcattcacagccatag |
5579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 8e-52; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 18738524 - 18738807
Alignment:
| Q |
17 |
aagctctgtgacgaaactcttcaacacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatg |
116 |
Q |
| |
|
|||||| ||||| ||||| | | ||||||| |||||| ||||||||| ||||| |||| |||||||||||||||||| || || ||| || |||||||| |
|
|
| T |
18738524 |
aagctcggtgacaaaactttgcgacacacatttcattgttggtcgagaacgaggattgacatttaagcatgcaaatgctaccacggcagcatgaattatg |
18738623 |
T |
|
| Q |
117 |
tcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagta |
216 |
Q |
| |
|
||| ||| ||| | |||||||||||||||| ||||| ||||||||||||| ||||| ||| | | ||| ||||||| | | ||||||||||||| || |
|
|
| T |
18738624 |
tcacgtataactatgtcattatttggaagtggaagacggtggtctaatacttgacatagtttgagactttgtgtcgatgttgattgaagtgatgacaata |
18738723 |
T |
|
| Q |
217 |
tatcaccagggtgtcttcctattaaagtttcaagtgccactactccaaagctatatacatcacacttttcactcacaaccatag |
300 |
Q |
| |
|
||| |||||||| ||||| | ||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||| |||||| |
|
|
| T |
18738724 |
aatccccagggtgccttccaactaaagtttcaagtgccactacaccaaaactatatacatcacacttttcattaacagccatag |
18738807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 18743488 - 18743771
Alignment:
| Q |
17 |
aagctctgtgacgaaactcttcaacacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatg |
116 |
Q |
| |
|
|||||| ||||| ||||| | | ||||||| |||||| ||||||||| ||||| |||| |||||||||||||||||| || || ||| || |||||||| |
|
|
| T |
18743488 |
aagctcggtgacaaaactttgcgacacacatttcattgttggtcgagaacgaggattgacatttaagcatgcaaatgctaccacggcagcatgaattatg |
18743587 |
T |
|
| Q |
117 |
tcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagta |
216 |
Q |
| |
|
||| ||| ||| | |||||||||||||||| ||||| ||||||||||||| ||||| ||| | | ||| ||||||| | | ||||||||||||| || |
|
|
| T |
18743588 |
tcacgtataactatgtcattatttggaagtggaagacggtggtctaatacttgacatagtttgagactttgtgtcgatgttgattgaagtgatgacaata |
18743687 |
T |
|
| Q |
217 |
tatcaccagggtgtcttcctattaaagtttcaagtgccactactccaaagctatatacatcacacttttcactcacaaccatag |
300 |
Q |
| |
|
||| |||||||| ||||| | ||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||| |||||| |
|
|
| T |
18743688 |
aatccccagggtgccttccaactaaagtttcaagtgccactacaccaaaactatatacatcacacttttcattaacagccatag |
18743771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 18748455 - 18748738
Alignment:
| Q |
17 |
aagctctgtgacgaaactcttcaacacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatg |
116 |
Q |
| |
|
|||||| ||||| ||||| | | ||||||| |||||| ||||||||| ||||| |||| ||||||||||||||| || || || |||| | |||||||| |
|
|
| T |
18748455 |
aagctcggtgacaaaactttgcgacacacatttcattgttggtcgagaacgaggattgacatttaagcatgcaaaggcaacaacggcaaaatgaattatg |
18748554 |
T |
|
| Q |
117 |
tcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagta |
216 |
Q |
| |
|
| | ||| |||| | |||||||||||||||| ||||||||||||||||||| ||||| ||| | | ||| ||||||| | | ||||||||||||| || |
|
|
| T |
18748555 |
ttacgtataaccatttcattatttggaagtggaagacgctggtctaatacttgacatagtttgacactttgtgtcgatgttgattgaagtgatgacaata |
18748654 |
T |
|
| Q |
217 |
tatcaccagggtgtcttcctattaaagtttcaagtgccactactccaaagctatatacatcacacttttcactcacaaccatag |
300 |
Q |
| |
|
||| |||||||| ||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| |||||| |
|
|
| T |
18748655 |
aatccccagggtgccttccagctaaagtttcaagtgccactacaccaaaactatatacatcacacttttcattcacagccatag |
18748738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 40 - 300
Target Start/End: Original strand, 18722826 - 18723086
Alignment:
| Q |
40 |
acacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatt |
139 |
Q |
| |
|
||||||| |||||| ||||||||| ||||| |||| ||||||||||||||| || || || |||| | ||||||||| | ||| |||| | ||||||| |
|
|
| T |
18722826 |
acacacatttcattgttggtcgagaacgaggattgacatttaagcatgcaaaggcaacaacggcaaaatgaattatgttacgtataaccatttcattatt |
18722925 |
T |
|
| Q |
140 |
tggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctatt |
239 |
Q |
| |
|
||||||||| ||||||||||||||||||| | ||| ||| | | ||| || |||| | | ||||||||||||| || ||| |||||||| ||||| | |
|
|
| T |
18722926 |
tggaagtggaagacgctggtctaatacttgatatagtttgacactttgtgttgatgttgattgaagtgatgacaataaatccccagggtgccttccagct |
18723025 |
T |
|
| Q |
240 |
aaagtttcaagtgccactactccaaagctatatacatcacacttttcactcacaaccatag |
300 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| |||||| |
|
|
| T |
18723026 |
aaagtttcaagtgccactacaccaaaactatatacatcacacttttcattcacagccatag |
18723086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University