View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_208 (Length: 312)
Name: NF11453A_low_208
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_208 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 5950630 - 5950916
Alignment:
| Q |
11 |
ggacatcattgaaataggacatccacaacatagcttgtgaagggaaaaagaagacgtaccatggtgccagcgatatccatttgatatgtcatcagctcta |
110 |
Q |
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| T |
5950630 |
ggacatcattgaaataggacatccacaacatagcttgtgaagggaaaaagaagacgtaccagggtgccagcgatatccatttgatatgtcatcaactcta |
5950729 |
T |
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| Q |
111 |
ttgactgcacccgacaatgattcttgtgacgatgaaacagaagagacagagggaaaatgatgataacgacgaggacttgcattattctcgtcgtctggat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5950730 |
ttgactgcacccgacaatgattcttgtgacgatgaaacagaagagacagagggaaaatgatgataacgacgaggacttgcattattctcgtcgtcttgat |
5950829 |
T |
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| Q |
211 |
aactgttcgtcctatctggaagtagcattgatatctctgcttcaatcatagtagcaatttcagaaggatcccaatttgtgatgtcca |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5950830 |
aactgttcgtcctatctggaagtagcattgatatctctgcttcaatcatagtagcaatttcagaaggatcccaatttgtgatgtcca |
5950916 |
T |
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