View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_209 (Length: 312)

Name: NF11453A_low_209
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_209
NF11453A_low_209
[»] chr3 (3 HSPs)
chr3 (12-306)||(15513433-15513727)
chr3 (43-85)||(15514277-15514319)
chr3 (208-293)||(12767337-12767422)
[»] chr5 (3 HSPs)
chr5 (192-306)||(9962910-9963024)
chr5 (235-306)||(18398599-18398670)
chr5 (212-306)||(31536419-31536513)
[»] chr2 (6 HSPs)
chr2 (208-306)||(12670743-12670841)
chr2 (209-293)||(10633364-10633448)
chr2 (252-307)||(34557292-34557347)
chr2 (252-306)||(30481661-30481715)
chr2 (252-306)||(33710553-33710607)
chr2 (208-277)||(4422823-4422892)
[»] chr8 (6 HSPs)
chr8 (235-288)||(9030583-9030636)
chr8 (250-306)||(37616265-37616321)
chr8 (205-306)||(8238727-8238828)
chr8 (252-293)||(10340283-10340324)
chr8 (235-291)||(10340211-10340267)
chr8 (237-265)||(36203407-36203435)
[»] chr7 (5 HSPs)
chr7 (210-265)||(11329505-11329560)
chr7 (192-287)||(25690712-25690807)
chr7 (208-306)||(16780773-16780871)
chr7 (235-306)||(41195668-41195739)
chr7 (235-303)||(30357895-30357963)
[»] chr4 (5 HSPs)
chr4 (191-306)||(40423307-40423422)
chr4 (252-299)||(43115575-43115622)
chr4 (257-306)||(53449054-53449103)
chr4 (207-265)||(25844267-25844325)
chr4 (235-283)||(40421951-40421999)
[»] chr1 (3 HSPs)
chr1 (253-306)||(39126966-39127019)
chr1 (252-306)||(25485009-25485063)
chr1 (230-306)||(34062624-34062700)
[»] scaffold0110 (1 HSPs)
scaffold0110 (250-306)||(31363-31419)
[»] chr6 (1 HSPs)
chr6 (252-306)||(33617713-33617767)


Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 12 - 306
Target Start/End: Complemental strand, 15513727 - 15513433
Alignment:
Q  12 atgaagtccattgaaatgccctttccatttccatcaacctaggttgtgatacaaacataatagtagacccttacaaaaataaaacaagggaaagattatt 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15513727 atgaggtccattgaaatgccctttccatttccatcaacctaggttgtgatacaaacataatagtagacccttacaaaaataaaacaagggaaagattatt 15513628  T
Q  112 gttcttcttcctttgagaattactcatttccttaatttaatgtgatttaactcatgttcggcannnnnnnnnnnacaataagttaattcatgctagcact 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||           | ||||||||||||||||||||||||    
T  15513627 gttcttcttcctttgagaattactcatttccttaatttaatgtgatttaactcacgttcggcatttttttttttataataagttaattcatgctagcact 15513528  T
Q  212 tttaagatcggttaaagagactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 306  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15513527 tttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 15513433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 15514319 - 15514277
Alignment:
Q  43 catcaacctaggttgtgatacaaacataatagtagacccttac 85  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  15514319 catcaacctaggttgcgatacaaacataatagtagacccttac 15514277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 293
Target Start/End: Original strand, 12767337 - 12767422
Alignment:
Q  208 cacttttaagatcggttaaagagactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatg 293  Q
    ||||| ||||||||||| |   |||| |||||||||||||  | |||||||||||||  | ||||||||| ||| |||||||||||    
T  12767337 cacttctaagatcggttgatccgacttaaaaagtgattgaaacgatcttaaaagtgttagcgtgagttaactcaagttgaaaaatg 12767422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 306
Target Start/End: Original strand, 9962910 - 9963024
Alignment:
Q  192 agttaattcatgctagcacttttaagatcggttaaag-agactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaa 290  Q
    |||||| ||| ||||||| |||||||||||||| ||  ||| | |||| |||||||| |||||||||||||||||  |||||||||| | ||| ||||||    
T  9962910 agttaactcacgctagcatttttaagatcggttgaaccagattgaaaa-gtgattgaatcaatcttaaaagtgtcattgtgagttaacttacgctgaaaa 9963008  T
Q  291 atgtcgaacgtgagtt 306  Q
    ||| ||||||| ||||    
T  9963009 atgccgaacgtaagtt 9963024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 306
Target Start/End: Original strand, 18398599 - 18398670
Alignment:
Q  235 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 306  Q
    ||||||||| |||  | |||||||||||||| |||| |||||| |||||||||||||| |||| ||||||||    
T  18398599 aaaaagtgaatgaaccgatcttaaaagtgtcagtgtaagttaactcacgttgaaaaatatcgagcgtgagtt 18398670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 306
Target Start/End: Original strand, 31536419 - 31536513
Alignment:
Q  212 tttaagatcggttaaagagactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 306  Q
    ||||||||| ||||||  |||| ||||| | |||||  | ||||||||| | || ||||||||||| || |||| |||||||| |||||||||||    
T  31536419 tttaagatcagttaaaccgacttaaaaaattattgaaccgatcttaaaaatatcagtgtgagttaactctcgttaaaaaatgttgaacgtgagtt 31536513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 306
Target Start/End: Complemental strand, 12670841 - 12670743
Alignment:
Q  208 cacttttaagatcggttaaagagactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 306  Q
    ||||||||||||||||| |   | || ||||| |||||||  | |||||||||||||| | ||||||||| |||||||| ||||||||||| |||||||    
T  12670841 cacttttaagatcggttgagtcggcttaaaaattgattgaaccgatcttaaaagtgtcagcgtgagttaagtcacgttgcaaaatgtcgaatgtgagtt 12670743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 293
Target Start/End: Complemental strand, 10633448 - 10633364
Alignment:
Q  209 acttttaagatcggttaaagagactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatg 293  Q
    |||||||||||||||| ||  |||| ||||| ||||||| |||||| | ||||  ||  |||||||||| |||||||||||||||    
T  10633448 acttttaagatcggttgaaacgacttaaaaattgattgaatcaatcctcaaaggatcactgtgagttaactcacgttgaaaaatg 10633364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 307
Target Start/End: Complemental strand, 34557347 - 34557292
Alignment:
Q  252 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagttt 307  Q
    ||||||||||||  |||||||||||| ||||| ||||||||||||| || ||||||    
T  34557347 atcttaaaagtgctggtgtgagttaactcacgctgaaaaatgtcgagcgagagttt 34557292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 30481715 - 30481661
Alignment:
Q  252 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 306  Q
    |||||||||||| | ||||||||||| ||||| | ||||||||||||| ||||||    
T  30481715 atcttaaaagtgccagtgtgagttaactcacgctaaaaaatgtcgaacatgagtt 30481661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 33710607 - 33710553
Alignment:
Q  252 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 306  Q
    |||||||||||||| | || |||||| ||||| ||||||||||||||||| ||||    
T  33710607 atcttaaaagtgtcagcgtaagttaactcacgctgaaaaatgtcgaacgtaagtt 33710553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 4422823 - 4422892
Alignment:
Q  208 cacttttaagatcggttaaagagactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaa 277  Q
    ||||||||||||||||| |   |||| |||||||||||||| | |||| ||||||| ||| |||||||||    
T  4422823 cacttttaagatcggttgattcgacttaaaaagtgattgagccgatctaaaaagtgacggcgtgagttaa 4422892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 9030636 - 9030583
Alignment:
Q  235 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaa 288  Q
    ||||||||||||| || |||||||||||||||||||||||||| ||||| ||||    
T  9030636 aaaaagtgattgaatcgatcttaaaagtgtcggtgtgagttaactcacgctgaa 9030583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 37616321 - 37616265
Alignment:
Q  250 caatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 306  Q
    |||||||||||||||| | |||||||||  |||| ||||||||||||||||||||||    
T  37616321 caatcttaaaagtgtcagcgtgagttaacccacgctgaaaaatgtcgaacgtgagtt 37616265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 306
Target Start/End: Complemental strand, 8238828 - 8238727
Alignment:
Q  205 tagcacttttaagatcggttaaagagactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgag 304  Q
    |||||||||||||||||||| |   ||||||||||||||||||    |||| ||||||||| | ||||||||| |  || |||||||| |||| ||||||    
T  8238828 tagcacttttaagatcggttgatccgactaaaaaagtgattgaactgatctaaaaagtgtcagcgtgagttaactaccgctgaaaaatatcgagcgtgag 8238729  T
Q  305 tt 306  Q
    ||    
T  8238728 tt 8238727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 293
Target Start/End: Original strand, 10340283 - 10340324
Alignment:
Q  252 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatg 293  Q
    |||||||||||||| | ||||||||| |||||||||||||||    
T  10340283 atcttaaaagtgtcagcgtgagttaactcacgttgaaaaatg 10340324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 10340267 - 10340211
Alignment:
Q  235 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaa 291  Q
    ||||| ||||||| || |||| ||||||||| ||||||||||| ||||| |||||||    
T  10340267 aaaaaatgattgaatcgatctaaaaagtgtcagtgtgagttaactcacgctgaaaaa 10340211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 36203407 - 36203435
Alignment:
Q  237 aaagtgattgagtcaatcttaaaagtgtc 265  Q
    |||||||||||||||||||||||||||||    
T  36203407 aaagtgattgagtcaatcttaaaagtgtc 36203435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 265
Target Start/End: Complemental strand, 11329560 - 11329505
Alignment:
Q  210 cttttaagatcggttaaagagactaaaaaagtgattgagtcaatcttaaaagtgtc 265  Q
    ||||||||||||||||||  |||| |||||||||| || |||||||||||||||||    
T  11329560 cttttaagatcggttaaaccgacttaaaaagtgatcgaatcaatcttaaaagtgtc 11329505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 287
Target Start/End: Complemental strand, 25690807 - 25690712
Alignment:
Q  192 agttaattcatgctagcacttttaagatcggttaaagagactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttga 287  Q
    ||||||||||||||  ||||||||||||||||| ||  | || |||||||||||||  | |||| ||||||||| | ||||||||| ||| |||||    
T  25690807 agttaattcatgctgacacttttaagatcggttgaaccggcttaaaaagtgattgaaccgatctaaaaagtgtcagcgtgagttaactcatgttga 25690712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 306
Target Start/End: Original strand, 16780773 - 16780871
Alignment:
Q  208 cacttttaagatcggttaaagagactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 306  Q
    ||||||||||||||||| ||  |||| |||||||||||||  | |||||||||||| | | || |||||| ||| | ||||||||||||| | ||||||    
T  16780773 cacttttaagatcggttgaatcgacttaaaaagtgattgaaccgatcttaaaagtgcccgcgtaagttaactcatgctgaaaaatgtcgagcatgagtt 16780871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 41195739 - 41195668
Alignment:
Q  235 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 306  Q
    ||||||||||||| |||| |||||||||||| | ||||||||| | ||| | ||||||| ||| ||||||||    
T  41195739 aaaaagtgattgaatcaaccttaaaagtgtcagcgtgagttaactaacgctaaaaaatgccgagcgtgagtt 41195668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 303
Target Start/End: Original strand, 30357895 - 30357963
Alignment:
Q  235 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtga 303  Q
    ||||||||| ||| ||||||| |||||||||||||||| |||  |  || ||||||||| |||||||||    
T  30357895 aaaaagtgagtgaatcaatctaaaaagtgtcggtgtgaattagctaccgatgaaaaatgccgaacgtga 30357963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 306
Target Start/End: Original strand, 40423307 - 40423422
Alignment:
Q  191 aagttaattcatgctagcacttttaagatcggttaaagagactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaa 290  Q
    ||||||| |||||||  ||||||||||||  ||| ||  |||| |||||||||||||  | ||||||||| |||| | ||||||||||||||| | ||||    
T  40423307 aagttaactcatgctgacacttttaagatttgttgaaccgacttaaaaagtgattgaaccgatcttaaaattgtcagcgtgagttaattcacgcttaaaa 40423406  T
Q  291 atgtcgaacgtgagtt 306  Q
    |||  || ||||||||    
T  40423407 atgctgagcgtgagtt 40423422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 299
Target Start/End: Complemental strand, 43115622 - 43115575
Alignment:
Q  252 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaac 299  Q
    |||||||||||||| ||||||||||| ||||| |||||||||||||||    
T  43115622 atcttaaaagtgtcagtgtgagttaactcacgctgaaaaatgtcgaac 43115575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 53449103 - 53449054
Alignment:
Q  257 aaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 306  Q
    ||||||||||| ||||||||| |||| ||||||||||||||| |||||||    
T  53449103 aaaagtgtcggcgtgagttaactcacattgaaaaatgtcgaatgtgagtt 53449054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 265
Target Start/End: Original strand, 25844267 - 25844325
Alignment:
Q  207 gcacttttaagatcggttaaagagactaaaaaagtgattgagtcaatcttaaaagtgtc 265  Q
    |||||||||||||||||| ||  | || |||||| |||||| |||||||||||||||||    
T  25844267 gcacttttaagatcggttgaaccggcttaaaaagcgattgaatcaatcttaaaagtgtc 25844325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 40421951 - 40421999
Alignment:
Q  235 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacg 283  Q
    |||||||||||||   ||||||||||||||| ||||||||||| |||||    
T  40421951 aaaaagtgattgaactaatcttaaaagtgtcagtgtgagttaactcacg 40421999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 39126966 - 39127019
Alignment:
Q  253 tcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 306  Q
    ||||||||||||| | ||||||||| ||||| ||||||||||||| ||||||||    
T  39126966 tcttaaaagtgtcagcgtgagttaactcacgctgaaaaatgtcgagcgtgagtt 39127019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 306
Target Start/End: Original strand, 25485009 - 25485063
Alignment:
Q  252 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 306  Q
    |||||||||||| | | ||||||||| ||||| || |||||||||||||||||||    
T  25485009 atcttaaaagtggcagcgtgagttaactcacgctggaaaatgtcgaacgtgagtt 25485063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 34062700 - 34062624
Alignment:
Q  230 gactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 306  Q
    |||| |||||||||||||  | || ||||||||||| | ||||||| | ||||| |||||||||| || ||||||||    
T  34062700 gacttaaaaagtgattgaaccgattttaaaagtgtcagcgtgagttcactcacgctgaaaaatgttgagcgtgagtt 34062624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 31419 - 31363
Alignment:
Q  250 caatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 306  Q
    ||||||||||| |||  ||||||||||| ||||| ||||||||| ||||||||||||    
T  31419 caatcttaaaaatgtatgtgtgagttaactcacgctgaaaaatgccgaacgtgagtt 31363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 306
Target Start/End: Original strand, 33617713 - 33617767
Alignment:
Q  252 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 306  Q
    ||||||||||| ||| | | ||||||||||||||||||||||||||  |||||||    
T  33617713 atcttaaaagtatcgctatcagttaattcacgttgaaaaatgtcgagtgtgagtt 33617767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University