View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_21 (Length: 517)
Name: NF11453A_low_21
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 7 - 505
Target Start/End: Complemental strand, 36549326 - 36548826
Alignment:
| Q |
7 |
cactcaatagaaaagtcacgagtttctggctgctccacttcaatagacacttcatttaacgcagaaggagctgcttggctagaatttctcttaggcttct |
106 |
Q |
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| T |
36549326 |
cactcaatagaaaagtcacgagtttctggctgctccacttcaatagacacttcatttaacgcagaaggagctgcttggctagaatttctcttaggcttct |
36549227 |
T |
|
| Q |
107 |
tataaagttgagataatgcttgaacaatgttcctcattgaaggtcgggttttggagactccattgacgcatttgagtgcaagtgaagccatgtcattaag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36549226 |
tataaagttgagataatgcttgaacaatgttcctcattgaaggtcgggttttggagactccattgacgcatttgagtgcaagtgaagccatgtcattaag |
36549127 |
T |
|
| Q |
207 |
cttatccacatcatagtttccattcagttgcggatctacaatttcttcccatgcaatcttgtcctcactttccatggcagcctaatcataaaggttatat |
306 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36549126 |
cttatgcacatcatagtttccattcagttgcggatctacaatttcttcccatgcaatcttgtcctcactttccatggcagcctaatcataaaggttatat |
36549027 |
T |
|
| Q |
307 |
atactaattatcaatgaatttaataactaaatattgcacacatgattagttcatcatatatccaatcatacttcatcatcttgctacatcctgattcacc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36549026 |
atactaattatcaatgaatttaataactaaatattgcacacatgattagttcatcatatatccaatcatacttcatcatcttgctacatcctgattcacc |
36548927 |
T |
|
| Q |
407 |
atgaagagtgtatctacaagtgtgacatatgattggatatctgtattaatcttctccacactgttagttcatagttattaaactc--tactgttgaatat |
504 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36548926 |
atgaagagtgtatctacaagtgtgacatatgattggatatctgtattaatcttctccacactgttagttcatagttattaaactctatactgttgaatat |
36548827 |
T |
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| Q |
505 |
t |
505 |
Q |
| |
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| T |
36548826 |
t |
36548826 |
T |
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