View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_212 (Length: 306)
Name: NF11453A_low_212
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_212 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 116 - 292
Target Start/End: Original strand, 15265482 - 15265658
Alignment:
| Q |
116 |
ataaggcttagtttttggacaagcaccagccttatcccaagcaccttcaaaatgatgtggcgtaaatgttgtaacaattacattaatttcattaccttta |
215 |
Q |
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| T |
15265482 |
ataaggcttagtttttggacaagcaccagccttatcccaagcaccttcaaaatgatgtggcgtaaatgttgtaacaattacattaatttcattaccttta |
15265581 |
T |
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| Q |
216 |
tttcctcttctatcaattatgctactaagggtagtccttaaagcctttcttaatatatcataaaaccctatttcagt |
292 |
Q |
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| T |
15265582 |
tttcctcttctatcaattatgctattaagggtagtccttaaagcctttcttaatacatcataaaaccctatttcagt |
15265658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 116 - 294
Target Start/End: Original strand, 15256957 - 15257135
Alignment:
| Q |
116 |
ataaggcttagtttttggacaagcaccagccttatcccaagcaccttcaaaatgatgtggcgtaaatgttgtaacaattacattaatttcattaccttta |
215 |
Q |
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| T |
15256957 |
ataaggcttagtctttggacaagcaccagctttatcccattcaccttcaaaatgagctggtgaaaatgttgtaactagtacatcaattttactaccttta |
15257056 |
T |
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| Q |
216 |
tttcctcttctatcaattatgctactaagggtagtccttaaagcctttcttaatatatcataaaaccctatttcagtat |
294 |
Q |
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| T |
15257057 |
tttcctctcctatcaattatactattaagagtagttcttaaagcctttctcaatacatcataaaacccaatttcagtat |
15257135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 269
Target Start/End: Original strand, 15287628 - 15287781
Alignment:
| Q |
116 |
ataaggcttagtttttggacaagcaccagccttatcccaagcaccttcaaaatgatgtggcgtaaatgttgtaacaattacattaatttcattaccttta |
215 |
Q |
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|||||||||||| |||| ||||| |||||||||||||||| |||||||||||||| || | ||||||| ||||||| |||| ||| ||| |||||| |
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| T |
15287628 |
ataaggcttagtctttgaacaagtaccagccttatcccaatcaccttcaaaatgagcaggtgaaaatgttttaacaatcacatctattctatttccttta |
15287727 |
T |
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| Q |
216 |
tttcctcttctatcaattatgctactaagggtagtccttaaagcctttcttaat |
269 |
Q |
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| T |
15287728 |
gcaactttcctctcaattatactattaagggtagtcctcaaagcctttcttaat |
15287781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 15265372 - 15265417
Alignment:
| Q |
6 |
aatcttaacctcccaaattcattgcctttggctttagcagccacca |
51 |
Q |
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| T |
15265372 |
aatcttaaccttccaaattcattgcctttggctttagcagccacca |
15265417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 265
Target Start/End: Complemental strand, 15284178 - 15284141
Alignment:
| Q |
228 |
tcaattatgctactaagggtagtccttaaagcctttct |
265 |
Q |
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| T |
15284178 |
tcaattatgctattaagggtagtccttaaagcctttct |
15284141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 44248382 - 44248419
Alignment:
| Q |
228 |
tcaattatgctactaagggtagtccttaaagcctttct |
265 |
Q |
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| T |
44248382 |
tcaattatgctattaagggtagtccttaaagcctttct |
44248419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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