View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_215 (Length: 303)

Name: NF11453A_low_215
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_215
NF11453A_low_215
[»] chr8 (12 HSPs)
chr8 (61-303)||(39188124-39188366)
chr8 (83-158)||(2875793-2875868)
chr8 (83-158)||(2795862-2795937)
chr8 (83-145)||(3144920-3144982)
chr8 (83-158)||(3159501-3159576)
chr8 (88-173)||(4416030-4416116)
chr8 (231-298)||(3160317-3160384)
chr8 (83-120)||(2890311-2890348)
chr8 (231-298)||(2889345-2889412)
chr8 (231-298)||(3145450-3145517)
chr8 (85-121)||(3494363-3494399)
chr8 (229-297)||(4416877-4416945)


Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 61 - 303
Target Start/End: Complemental strand, 39188366 - 39188124
Alignment:
Q  61 gggaatcattgcactgacgtcgtgaatatgcaagagcttctaaaagatttgagaaggtaaccaagttacattgatatatttcaccctcatccactacagt 160  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39188366 gggaatcattgcaccgacgtcgtgaatatgcaagagcttctaaaagatttgagaaggtaaccaagttacattgatatatttcaccctcatccactacagt 39188267  T
Q  161 gcgttaggacactacacttgggcctatggtccatggtgagccaagcattgggcaaatcttgttagagttggttaggagcatggtgctttgtttaggagtc 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39188266 gcgttaggacactacacttgggcctatggtccatggtgagccaagcattgggcaaatcttgttagagttggttaggagcatggtgctttgtttaggagtc 39188167  T
Q  261 tttgactttggtttacgtctttgattttgttattccacaattg 303  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  39188166 tttgactttggtttacctctttgattttgttattccaccattg 39188124  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 2875868 - 2875793
Alignment:
Q  83 tgaatatgcaagagcttctaaaagatttgagaaggtaaccaagttacattgatatatttcaccctcatccactaca 158  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||| ||||||||||||    
T  2875868 tgaatatgcaagagcttctaaaagatttcagaaggtaaccaggttacattaatatatttcaccatcatccactaca 2875793  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 2795862 - 2795937
Alignment:
Q  83 tgaatatgcaagagcttctaaaagatttgagaaggtaaccaagttacattgatatatttcaccctcatccactaca 158  Q
    |||||||||||||||||||||||||| | |||||||||||| |||||||| |||||||||||| ||||||||||||    
T  2795862 tgaatatgcaagagcttctaaaagatatcagaaggtaaccatgttacattaatatatttcaccatcatccactaca 2795937  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 3144920 - 3144982
Alignment:
Q  83 tgaatatgcaagagcttctaaaagatttgagaaggtaaccaagttacattgatatatttcacc 145  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||    
T  3144920 tgaatatgcaagagcttctaaaagatttcagaaggtaaccaggttacattaatatatttcacc 3144982  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 3159501 - 3159576
Alignment:
Q  83 tgaatatgcaagagcttctaaaagatttgagaaggtaaccaagttacattgatatatttcaccctcatccactaca 158  Q
    |||||||||||||||||| || |||||| |||||||||||| || ||||| |||||||||||| ||||||||||||    
T  3159501 tgaatatgcaagagcttccaagagatttcagaaggtaaccaggtaacattaatatatttcaccatcatccactaca 3159576  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 88 - 173
Target Start/End: Original strand, 4416030 - 4416116
Alignment:
Q  88 atgcaagagcttctaaaagatttgagaaggtaaccaag-ttacattgatatatttcaccctcatccactacagtgcgttaggacact 173  Q
    ||||||| |||||||||||||||  |||||||||  || ||||||||||||||||||||||||||||||||| || | |||||||||    
T  4416030 atgcaagggcttctaaaagatttatgaaggtaactgaggttacattgatatatttcaccctcatccactacaatgtgataggacact 4416116  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 3160317 - 3160384
Alignment:
Q  231 gttaggagcatggtgctttgtttaggagtctttgactttggtttacgtctttgattttgttattccac 298  Q
    ||||||||||| ||||| | ||||||||||||||||| |||||||  ||||| ||| |||||||||||    
T  3160317 gttaggagcatagtgctctctttaggagtctttgactctggtttatctctttcattctgttattccac 3160384  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 2890348 - 2890311
Alignment:
Q  83 tgaatatgcaagagcttctaaaagatttgagaaggtaa 120  Q
    |||||||||||||||||||||||||||| |||||||||    
T  2890348 tgaatatgcaagagcttctaaaagatttcagaaggtaa 2890311  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 298
Target Start/End: Complemental strand, 2889412 - 2889345
Alignment:
Q  231 gttaggagcatggtgctttgtttaggagtctttgactttggtttacgtctttgattttgttattccac 298  Q
    ||||||||||| ||||| | ||||||||||||||||| |||||||  | ||| ||| |||||||||||    
T  2889412 gttaggagcatagtgctctctttaggagtctttgactctggtttatctatttcattctgttattccac 2889345  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 3145450 - 3145517
Alignment:
Q  231 gttaggagcatggtgctttgtttaggagtctttgactttggtttacgtctttgattttgttattccac 298  Q
    ||||||||||| ||||| | ||||||||||||||||| |||||||  | ||| ||| |||||||||||    
T  3145450 gttaggagcatagtgctctctttaggagtctttgactctggtttatctatttcattctgttattccac 3145517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 3494399 - 3494363
Alignment:
Q  85 aatatgcaagagcttctaaaagatttgagaaggtaac 121  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  3494399 aatatgcaaaagcttctaaaagatatgagaaggtaac 3494363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 297
Target Start/End: Original strand, 4416877 - 4416945
Alignment:
Q  229 tggttaggagcatggtgctttgtttaggagtctttgactttggtttacgtctttgattttgttattcca 297  Q
    |||||||||| |  ||||| |||||||||||||| |||  |||||||  ||||| ||||||||||||||    
T  4416877 tggttaggagtagagtgctctgtttaggagtcttggaccctggtttatctctttcattttgttattcca 4416945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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