View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_218 (Length: 302)

Name: NF11453A_low_218
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_218
NF11453A_low_218
[»] chr3 (23 HSPs)
chr3 (75-151)||(24357411-24357487)
chr3 (138-294)||(24357245-24357392)
chr3 (7-61)||(24357567-24357621)
chr3 (85-161)||(19115453-19115529)
chr3 (177-219)||(42886880-42886922)
chr3 (177-222)||(3985992-3986037)
chr3 (80-161)||(42886811-42886892)
chr3 (75-161)||(42571536-42571622)
chr3 (177-222)||(19115517-19115562)
chr3 (177-222)||(44064429-44064474)
chr3 (75-161)||(50038178-50038264)
chr3 (177-218)||(4759421-4759462)
chr3 (177-222)||(42571503-42571548)
chr3 (177-222)||(45460797-45460842)
chr3 (113-161)||(4759385-4759433)
chr3 (75-121)||(24356936-24356982)
chr3 (115-161)||(45460763-45460809)
chr3 (177-222)||(11337586-11337631)
chr3 (260-297)||(20028617-20028654)
chr3 (177-222)||(50038146-50038190)
chr3 (242-294)||(3986027-3986079)
chr3 (175-223)||(30680786-30680834)
chr3 (258-294)||(54918276-54918312)
[»] chr4 (27 HSPs)
chr4 (75-161)||(51733508-51733594)
chr4 (87-161)||(4505405-4505479)
chr4 (177-222)||(7905977-7906022)
chr4 (173-222)||(51733475-51733524)
chr4 (75-161)||(22220373-22220459)
chr4 (177-222)||(4505467-4505512)
chr4 (85-161)||(21864397-21864473)
chr4 (85-161)||(21920258-21920334)
chr4 (85-161)||(37624623-37624699)
chr4 (177-222)||(22220340-22220385)
chr4 (177-222)||(36558270-36558315)
chr4 (177-222)||(37624687-37624732)
chr4 (85-161)||(52915556-52915632)
chr4 (75-161)||(7906010-7906096)
chr4 (177-223)||(38510225-38510271)
chr4 (177-222)||(21864364-21864409)
chr4 (177-222)||(21920225-21920270)
chr4 (177-222)||(25231306-25231351)
chr4 (173-222)||(28308853-28308902)
chr4 (177-222)||(52915523-52915568)
chr4 (85-125)||(9809673-9809713)
chr4 (86-146)||(25231243-25231303)
chr4 (260-294)||(30261455-30261489)
chr4 (177-222)||(43337728-43337773)
chr4 (85-125)||(9811334-9811374)
chr4 (85-161)||(38510259-38510335)
chr4 (110-146)||(43337776-43337812)
[»] chr2 (23 HSPs)
chr2 (75-161)||(35799259-35799345)
chr2 (86-161)||(45423686-45423761)
chr2 (75-161)||(16463042-16463128)
chr2 (75-161)||(17695835-17695921)
chr2 (177-223)||(35799333-35799379)
chr2 (177-223)||(5717643-5717689)
chr2 (177-223)||(22620310-22620356)
chr2 (75-161)||(43427297-43427383)
chr2 (85-161)||(5717579-5717655)
chr2 (177-222)||(27986169-27986214)
chr2 (177-222)||(28072701-28072746)
chr2 (177-222)||(32022877-32022922)
chr2 (85-161)||(27986105-27986181)
chr2 (85-161)||(28072637-28072713)
chr2 (107-161)||(14286020-14286074)
chr2 (177-207)||(16463024-16463054)
chr2 (116-161)||(16792584-16792629)
chr2 (177-222)||(17695802-17695847)
chr2 (75-124)||(18719479-18719528)
chr2 (177-222)||(43427265-43427309)
chr2 (177-222)||(45423749-45423794)
chr2 (80-124)||(7028859-7028903)
chr2 (75-139)||(45301822-45301886)
[»] chr1 (35 HSPs)
chr1 (75-161)||(50249367-50249453)
chr1 (80-161)||(14373421-14373502)
chr1 (75-161)||(12591090-12591176)
chr1 (177-223)||(34032054-34032100)
chr1 (177-222)||(50249441-50249486)
chr1 (85-161)||(34032088-34032164)
chr1 (75-161)||(26352089-26352175)
chr1 (80-161)||(12484636-12484717)
chr1 (177-222)||(14373388-14373433)
chr1 (177-222)||(30293467-30293512)
chr1 (177-222)||(34047208-34047253)
chr1 (177-222)||(39125734-39125779)
chr1 (177-222)||(44257656-44257701)
chr1 (177-222)||(52023948-52023993)
chr1 (75-161)||(27721015-27721101)
chr1 (177-223)||(44557033-44557079)
chr1 (177-222)||(14593320-14593365)
chr1 (177-222)||(26352056-26352101)
chr1 (85-161)||(44257689-44257765)
chr1 (177-220)||(12591059-12591102)
chr1 (110-161)||(14593353-14593404)
chr1 (86-161)||(41857382-41857457)
chr1 (173-207)||(11449678-11449712)
chr1 (183-217)||(11799608-11799642)
chr1 (75-161)||(25487145-25487231)
chr1 (177-223)||(27721089-27721135)
chr1 (177-223)||(27721204-27721250)
chr1 (80-161)||(30293397-30293479)
chr1 (175-220)||(5672-5717)
chr1 (177-222)||(8894980-8895025)
chr1 (177-222)||(12484603-12484648)
chr1 (75-124)||(16757239-16757288)
chr1 (174-222)||(18794507-18794555)
chr1 (174-222)||(29568034-29568082)
chr1 (85-161)||(49402879-49402955)
[»] chr8 (16 HSPs)
chr8 (75-151)||(37559553-37559629)
chr8 (80-161)||(39765870-39765951)
chr8 (75-161)||(15160456-15160542)
chr8 (177-222)||(15160423-15160468)
chr8 (176-223)||(43724512-43724559)
chr8 (177-222)||(396191-396236)
chr8 (80-161)||(17655969-17656050)
chr8 (85-161)||(43724449-43724525)
chr8 (173-222)||(12339851-12339898)
chr8 (84-161)||(396224-396301)
chr8 (177-222)||(1511632-1511677)
chr8 (177-222)||(39765837-39765882)
chr8 (80-161)||(40362497-40362578)
chr8 (173-222)||(37559510-37559559)
chr8 (177-222)||(40399844-40399889)
chr8 (177-222)||(41679453-41679498)
[»] chr7 (36 HSPs)
chr7 (80-161)||(42285970-42286051)
chr7 (85-161)||(18292402-18292478)
chr7 (85-161)||(31883851-31883927)
chr7 (177-223)||(47187793-47187839)
chr7 (177-222)||(6747357-6747402)
chr7 (177-222)||(12977661-12977706)
chr7 (177-222)||(12983119-12983164)
chr7 (177-222)||(18292466-18292511)
chr7 (80-161)||(37502381-37502462)
chr7 (177-222)||(42286039-42286084)
chr7 (85-161)||(2297110-2297186)
chr7 (85-161)||(12977694-12977770)
chr7 (75-147)||(31929882-31929954)
chr7 (85-161)||(44567049-44567125)
chr7 (75-161)||(715871-715957)
chr7 (75-161)||(6747283-6747369)
chr7 (75-161)||(18270635-18270721)
chr7 (177-222)||(2297174-2297219)
chr7 (177-222)||(31883915-31883960)
chr7 (177-222)||(34274925-34274970)
chr7 (110-161)||(12983152-12983203)
chr7 (75-161)||(34274851-34274937)
chr7 (177-222)||(715838-715883)
chr7 (177-222)||(18270709-18270754)
chr7 (75-124)||(31196627-31196676)
chr7 (177-222)||(37502450-37502495)
chr7 (177-222)||(40339600-40339645)
chr7 (112-161)||(40927254-40927303)
chr7 (177-223)||(7900070-7900116)
chr7 (177-223)||(19303358-19303404)
chr7 (75-161)||(25440929-25441015)
chr7 (177-222)||(4268794-4268839)
chr7 (177-222)||(25441003-25441048)
chr7 (181-222)||(31929834-31929875)
chr7 (85-141)||(18528516-18528572)
chr7 (174-210)||(21752088-21752124)
[»] chr5 (15 HSPs)
chr5 (80-161)||(43584386-43584467)
chr5 (75-161)||(7317085-7317171)
chr5 (75-161)||(10344942-10345028)
chr5 (177-223)||(35765876-35765922)
chr5 (177-222)||(7317159-7317204)
chr5 (177-222)||(10344909-10344954)
chr5 (80-161)||(25362810-25362891)
chr5 (177-222)||(32158673-32158718)
chr5 (170-222)||(3024908-3024960)
chr5 (85-161)||(35765910-35765986)
chr5 (75-161)||(3024941-3025027)
chr5 (181-222)||(25362777-25362818)
chr5 (177-222)||(43584353-43584398)
chr5 (177-222)||(13974415-13974460)
chr5 (75-124)||(34534416-34534465)
[»] scaffold0332 (2 HSPs)
scaffold0332 (75-161)||(3820-3906)
scaffold0332 (177-222)||(3787-3832)
[»] chr6 (12 HSPs)
chr6 (177-222)||(4850472-4850517)
chr6 (177-222)||(29400076-29400121)
chr6 (85-161)||(4850505-4850581)
chr6 (82-161)||(19689394-19689473)
chr6 (176-223)||(19689460-19689507)
chr6 (177-222)||(32429418-32429463)
chr6 (177-222)||(13503810-13503855)
chr6 (177-210)||(13597932-13597965)
chr6 (177-222)||(1502719-1502764)
chr6 (177-222)||(13011314-13011359)
chr6 (110-147)||(19689250-19689287)
chr6 (85-161)||(32429351-32429430)
[»] scaffold0565 (1 HSPs)
scaffold0565 (258-294)||(9877-9913)


Alignment Details
Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 24357487 - 24357411
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaata 151  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24357487 ttgtacccttcaattaatactatggacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaata 24357411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 294
Target Start/End: Complemental strand, 24357392 - 24357245
Alignment:
Q  138 agttaataagaatagtttggtaaacttctttaaaaaagaataatttggtaaaataacaattctctttcttttaatcattgcattttgtaacnnnnnnnnn 237  Q
    |||||||||||||| |||||||||||||||| ||      | |||||||||||||||||||||||||||||||||||||||||||||||||             
T  24357392 agttaataagaataatttggtaaacttcttttaa------tcatttggtaaaataacaattctctttcttttaatcattgcattttgtaac---aaaaaa 24357302  T
Q  238 nnnntcattgcatttcgtagtatgtgtaaaaactttaaacgataatcattttgaaac 294  Q
        ||||||||||||| ||||||||| |||||||||||||| | | ||||||||||    
T  24357301 aaaatcattgcatttcgcagtatgtgtgaaaactttaaacgacatttattttgaaac 24357245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 24357621 - 24357567
Alignment:
Q  7 atttatatgtatggggacataagttactctcatcattttaaaatgagtgtccctt 61  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  24357621 atttatatgtatggggacataagttactctcttcattttaaaataagtgtccctt 24357567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 19115453 - 19115529
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    ||||||||||| ||||||| | || |||||||||| |||||||| |||||||||||||||||| ||| |||||||||    
T  19115453 caattaatactctgcacactacttccaaagtattacttttaaaactaaccaatagttaataaggataatttggtaaa 19115529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 42886880 - 42886922
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgca 219  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  42886880 ataatttggtaaaataacaattctctttcttttaatcattgca 42886922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 3985992 - 3986037
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  3985992 ataatttggtaaaataaaaattctctttcttttaatcattgcattt 3986037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 42886811 - 42886892
Alignment:
Q  80 cccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| ||||||||| ||||||||| | || |||||||||| |||||||| ||| |||||||||||||| ||| |||||||||    
T  42886811 ccctccaattaatattatgcacactacttccaaagtattacttttaaaactaatcaatagttaataaggataatttggtaaa 42886892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 42571622 - 42571536
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| ||||||| | || |||||||||| |||||||| |||||||||| ||||||| ||| |||| ||||    
T  42571622 ttgtaccctccaattaatactctgcacactacttccaaagtattacttttaaaactaaccaatagctaataaggataatttgataaa 42571536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 19115517 - 19115562
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||    
T  19115517 ataatttggtaaaataaccattctttttcttttaatcattgcattt 19115562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 44064474 - 44064429
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||  |||||||||||||||||||||||||||    
T  44064474 ataatttggtaaaataatcattctctttcttttaatcattgcattt 44064429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 50038264 - 50038178
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| ||||||| | ||  ||||||||| |||||||| ||| ||||| |||||||| ||| |||||||||    
T  50038264 ttgtaccctccaattaatactctgcacactacttctaaagtattacttttaaaactaagcaatatttaataaggataatttggtaaa 50038178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 4759421 - 4759462
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgc 218  Q
    |||||||||||||||||| |||| ||||||||||||||||||    
T  4759421 ataatttggtaaaataaccattcgctttcttttaatcattgc 4759462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 42571548 - 42571503
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||| ||||||||| ||||||| |||||||||||||||||||    
T  42571548 ataatttgataaaataaccattctctatcttttaatcattgcattt 42571503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 45460797 - 45460842
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||||||| | |||||||||||| ||||||||    
T  45460797 ataatttggtaaaataacaattttatttcttttaatctttgcattt 45460842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 4759385 - 4759433
Alignment:
Q  113 agtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    ||||||| |||||||| |||||||||||||||||| ||| |||||||||    
T  4759385 agtattacttttaaaactaaccaatagttaataaggataatttggtaaa 4759433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 24356982 - 24356936
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatt 121  Q
    |||| |||||||||||||| |||||||| || |||||||||||||||    
T  24356982 ttgtacccttcaattaatattatgcacatcactttcaaagtattatt 24356936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 45460763 - 45460809
Alignment:
Q  115 tattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    ||||| |||||||| |||||||||||||||||| ||| |||||||||    
T  45460763 tattacttttaaaactaaccaatagttaataaggataatttggtaaa 45460809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 11337631 - 11337586
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    ||||||||||||||| || |||| ||||||| ||||||||||||||    
T  11337631 ataatttggtaaaattactattccctttcttctaatcattgcattt 11337586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 20028617 - 20028654
Alignment:
Q  260 tgtgtaaaaactttaaacgataatcattttgaaacgga 297  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  20028617 tgtgtaaaaaatttaaacgatattcattttgaaacgga 20028654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 50038190 - 50038146
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||  |||||||| ||||||||||||||||||    
T  50038190 ataatttggtaaaataatcattctctt-cttttaatcattgcattt 50038146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 3986027 - 3986079
Alignment:
Q  242 tcattgcatttcgtagtatgtgtaaaaactttaaacgataatcattttgaaac 294  Q
    |||||||||||| || | ||||||||||| |||||||| | ||||||||||||    
T  3986027 tcattgcatttcttaatgtgtgtaaaaaccttaaacgacattcattttgaaac 3986079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 30680834 - 30680786
Alignment:
Q  175 gaataatttggtaaaataacaattctctttcttttaatcattgcatttt 223  Q
    |||||||||||||||||||||  ||| ||||||||||||| | ||||||    
T  30680834 gaataatttggtaaaataacatctctttttcttttaatcaatacatttt 30680786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 54918276 - 54918312
Alignment:
Q  258 tatgtgtaaaaactttaaacgataatcattttgaaac 294  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  54918276 tatgtgtaaaaaccttaaacgatactcattttgaaac 54918312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 51733594 - 51733508
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| ||||||| | || |||||||||| |||||||| |||||||||||||||||||||| |||||||||    
T  51733594 ttgtaccctccaattaatactctgcacactacttccaaagtattacttttaaaactaaccaatagttaataagaataatttggtaaa 51733508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 87 - 161
Target Start/End: Original strand, 4505405 - 4505479
Alignment:
Q  87 attaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    ||||||||| ||||||| | ||||||||||||| |||||||| |||||||||||||||||| ||| |||||||||    
T  4505405 attaatactctgcacactactttcaaagtattagttttaaaactaaccaatagttaataaggataatttggtaaa 4505479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 7906022 - 7905977
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  7906022 ataatttggtaaaataacaattctctttcttttaatcattgcattt 7905977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 51733524 - 51733475
Alignment:
Q  173 aagaataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  51733524 aagaataatttggtaaaataaccattctctttcttttaatcattgcattt 51733475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 22220459 - 22220373
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||||||||||| | || |||| ||||| |||||||| |||||||||| ||||||| ||| |||||||||    
T  22220459 ttgtaccctccaattaatactatgcacactacttccaaaatattacttttaaaactaaccaatagctaataaggataatttggtaaa 22220373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 4505467 - 4505512
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  4505467 ataatttggtaaaataaccattctctttcttttaatcattgcattt 4505512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 21864473 - 21864397
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    ||||||||||| ||||||| | || |||||||||| |||||||| ||||||||| |||||||| ||| |||||||||    
T  21864473 caattaatactctgcacactacttccaaagtattacttttaaaactaaccaataattaataaggataatttggtaaa 21864397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 21920334 - 21920258
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    ||||||||||| ||||||| | || |||||||||| |||||||| ||||||||| |||||||| ||| |||||||||    
T  21920334 caattaatactctgcacactacttccaaagtattacttttaaaactaaccaataattaataaggataatttggtaaa 21920258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 37624623 - 37624699
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    ||||||||||| ||||||| | ||  |||||||||||||||||| ||||||||| |||||||| ||| |||||||||    
T  37624623 caattaatactctgcacactacttcaaaagtattatttttaaaactaaccaataattaataaggataatttggtaaa 37624699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 22220385 - 22220340
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||    
T  22220385 ataatttggtaaaataaccattctcattcttttaatcattgcattt 22220340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 36558315 - 36558270
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||    
T  36558315 ataatttggtaaaataaaaattatctttcttttaatcattgcattt 36558270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 37624687 - 37624732
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||  |||||||||||||||||||||||||||    
T  37624687 ataatttggtaaaataatcattctctttcttttaatcattgcattt 37624732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 52915632 - 52915556
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    ||||||||||| ||||||| | || |||||||||| |||||||| |||||||||| ||||||  ||| |||||||||    
T  52915632 caattaatactctgcacactacttccaaagtattacttttaaaactaaccaatagctaataaagataatttggtaaa 52915556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 7906096 - 7906010
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| || ||||   || |||||||||| |||||||| |||| ||||||||||||| ||| |||||||||    
T  7906096 ttgtaccctccaattaatactctggacactgcttccaaagtattacttttaaaactaacaaatagttaataaggataatttggtaaa 7906010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 38510271 - 38510225
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcatttt 223  Q
    ||||||||||||||||||  |||| ||||||||||||||||||||||    
T  38510271 ataatttggtaaaataacctttctttttcttttaatcattgcatttt 38510225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 21864409 - 21864364
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||  |||||||||||||||||||||| ||||    
T  21864409 ataatttggtaaaataatcattctctttcttttaatcattgtattt 21864364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 21920270 - 21920225
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||  |||||||||||||||||||||| ||||    
T  21920270 ataatttggtaaaataatcattctctttcttttaatcattgtattt 21920225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 25231306 - 25231351
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||| ||||||||  |||||||||||||||||||||||||||    
T  25231306 ataatttgataaaataatcattctctttcttttaatcattgcattt 25231351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 28308853 - 28308902
Alignment:
Q  173 aagaataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||| |||||||| | || |||||||||||||||||||||||    
T  28308853 aagaataatttgataaaataatatttatctttcttttaatcattgcattt 28308902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 52915568 - 52915523
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||  |||||||||||||||||||||| ||||    
T  52915568 ataatttggtaaaataatcattctctttcttttaatcattgtattt 52915523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 9809713 - 9809673
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattattttta 125  Q
    ||||||||||||||||||| | |||||||||||||||||||    
T  9809713 caattaatactatgcacactactttcaaagtattattttta 9809673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 25231243 - 25231303
Alignment:
Q  86 aattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataa 146  Q
    |||||||||| || |||| | || |||||||||| ||||||| ||||||||||||||||||    
T  25231243 aattaatactttgtacactacttccaaagtattacttttaaacttaaccaatagttaataa 25231303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 30261455 - 30261489
Alignment:
Q  260 tgtgtaaaaactttaaacgataatcattttgaaac 294  Q
    |||||||||||||||||||||| ||||||||||||    
T  30261455 tgtgtaaaaactttaaacgatattcattttgaaac 30261489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 43337773 - 43337728
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||| ||||||||  |||||||||||||||||||||| ||||    
T  43337773 ataatttgataaaataatcattctctttcttttaatcattgtattt 43337728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 9811374 - 9811334
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattattttta 125  Q
    ||||||||||||||||||| | ||||||||||||| |||||    
T  9811374 caattaatactatgcacactactttcaaagtattactttta 9811334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 38510335 - 38510259
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    ||||||||||| | ||||| | || |||||||||| |||||||| |||||||||  ||||||  ||| |||||||||    
T  38510335 caattaatactctacacactacttccaaagtattacttttaaaactaaccaataactaataattataatttggtaaa 38510259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 43337812 - 43337776
Alignment:
Q  110 caaagtattatttttaaaattaaccaatagttaataa 146  Q
    |||||||||| |||||||| |||||||||||||||||    
T  43337812 caaagtattacttttaaaactaaccaatagttaataa 43337776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 35799259 - 35799345
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||| ||||||||| | ||||||||||||| |||||||| |||||||||||||||||| ||| |||||||||    
T  35799259 ttgtaccctccaattaatattatgcacactactttcaaagtattacttttaaaactaaccaatagttaataaggataatttggtaaa 35799345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 45423686 - 45423761
Alignment:
Q  86 aattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||||||||||||||||| | || |||||||||| |||||||| ||||||||| |||||||| ||| |||||||||    
T  45423686 aattaatactatgcacactacttccaaagtattagttttaaaactaaccaataattaataaggataatttggtaaa 45423761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 16463128 - 16463042
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| |||||||||||||||  ||||||| | || |||||||||| |||||||| |||||||||||||| ||| ||| |||||||||    
T  16463128 ttgtacccttcaattaataccctgcacactacttccaaagtattacttttaaaactaaccaatagttaacaaggataatttggtaaa 16463042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 17695921 - 17695835
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| ||||||| | || |||||||||| |||||||| |||||||||||||||||  ||| |||||||||    
T  17695921 ttgtaccctccaattaatactctgcacactacttccaaagtattacttttaaaactaaccaatagttaataaagataatttggtaaa 17695835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 35799333 - 35799379
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcatttt 223  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  35799333 ataatttggtaaaataaccattctctttcttttaatcattgcatttt 35799379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 5717643 - 5717689
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcatttt 223  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||    
T  5717643 ataatttggtaaaataatcattctctttcttttaatcattgcatttt 5717689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 22620356 - 22620310
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcatttt 223  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||    
T  22620356 ataatttagtaaaataaccattctctttcttttaatcattgcatttt 22620310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 43427383 - 43427297
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| ||||| | | || ||||||||||||||||||| |||| ||||| ||||||| ||| |||||||||    
T  43427383 ttgtaccctccaattaatactttgcacgctacttccaaagtattatttttaaaactaactaatagctaataaggataatttggtaaa 43427297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 5717579 - 5717655
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    ||||||||||| | ||||| | || |||||||||| |||||||| ||||||||| |||||||| ||| |||||||||    
T  5717579 caattaatactctacacactacttccaaagtattacttttaaaactaaccaatatttaataaggataatttggtaaa 5717655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 27986169 - 27986214
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||| ||||||||| ||||||| |||||||||    
T  27986169 ataatttggtaaaataaccattctctttattttaataattgcattt 27986214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 28072701 - 28072746
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||| ||||||||| ||||||| |||||||||    
T  28072701 ataatttggtaaaataaccattctctttattttaataattgcattt 28072746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 32022922 - 32022877
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||  ||||||||||||||||||||| |||||    
T  32022922 ataatttggtaaaataatcattctctttcttttaatcattacattt 32022877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 27986105 - 27986181
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    ||||||||||| | ||||| | || |||||||||| |||||||| ||| |||||| ||||||| ||| |||||||||    
T  27986105 caattaatactcttcacactacttccaaagtattacttttaaaactaatcaatagctaataaggataatttggtaaa 27986181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 28072637 - 28072713
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    ||||||||||| | ||||| | || |||||||||| |||||||| ||| |||||| ||||||| ||| |||||||||    
T  28072637 caattaatactcttcacactacttccaaagtattacttttaaaactaatcaatagctaataaggataatttggtaaa 28072713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 14286020 - 14286074
Alignment:
Q  107 tttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    ||||||||||| | |||||||| |||||||||||||||||| ||| |||| ||||    
T  14286020 tttcaaagtataacttttaaaactaaccaatagttaataaggataatttgataaa 14286074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 207
Target Start/End: Complemental strand, 16463054 - 16463024
Alignment:
Q  177 ataatttggtaaaataacaattctctttctt 207  Q
    |||||||||||||||||||||||||||||||    
T  16463054 ataatttggtaaaataacaattctctttctt 16463024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 16792584 - 16792629
Alignment:
Q  116 attatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| |||||||| |||||||||||||||||| ||| |||||||||    
T  16792584 attacttttaaaactaaccaatagttaataaggataatttggtaaa 16792629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 17695847 - 17695802
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||| |||||| |||| ||||||| |||||||    
T  17695847 ataatttggtaaaataaccattctcattctcttaatcactgcattt 17695802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 18719528 - 18719479
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattattttt 124  Q
    |||| ||||||||||||||||||  |||| | ||||||||||||||||||    
T  18719528 ttgtacccttcaattaatactatatacactattttcaaagtattattttt 18719479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 43427309 - 43427265
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||| ||||||||| ||||||| |||||||||    
T  43427309 ataatttggtaaaataaccattctctttattttaat-attgcattt 43427265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 45423749 - 45423794
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    ||||||||||||||||| |||||| ||| ||||||||||| |||||    
T  45423749 ataatttggtaaaataataattctatttattttaatcatttcattt 45423794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 7028903 - 7028859
Alignment:
Q  80 cccttcaattaatactatgcacaccaatttcaaagtattattttt 124  Q
    ||||||||||||||||||  |||| | ||||||||||||||||||    
T  7028903 cccttcaattaatactatatacactactttcaaagtattattttt 7028859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 45301822 - 45301886
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatag 139  Q
    |||| ||| |||||||||||| || |||| | ||| ||||||||| |||||||| ||||||||||    
T  45301822 ttgtacccatcaattaatactgtgtacactacttttaaagtattacttttaaaactaaccaatag 45301886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 50249367 - 50249453
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| ||||||| | || |||||||||| ||||||||||||||||||||||||||| ||| |||||||||    
T  50249367 ttgtaccctccaattaatactttgcacactacttccaaagtattacttttaaaattaaccaatagttaataaggataatttggtaaa 50249453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 14373502 - 14373421
Alignment:
Q  80 cccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| ||||||||| | ||||||| | |||||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  14373502 ccctccaattaataatctgcacactactttcaaagtattatttttaaaactaaccaatagttaataaggataatttggtaaa 14373421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 12591176 - 12591090
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| |||| |||||||||||  |||||| | ||||||| |||||||||||||| |||||||||||||||||| ||| |||||||||    
T  12591176 ttgtaccctccaattaatactcagcacactactttcaaattattatttttaaaactaaccaatagttaataaggataatttggtaaa 12591090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 34032100 - 34032054
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcatttt 223  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  34032100 ataatttggtaaaataaccattctctttcttttaatcattgcatttt 34032054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 50249441 - 50249486
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  50249441 ataatttggtaaaataaccattctctttcttttaatcattgcattt 50249486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 34032164 - 34032088
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    ||||||||||| ||||| | | || |||||||||| |||||||| |||||||||||||||||| ||| |||||||||    
T  34032164 caattaatactttgcacgctacttccaaagtattacttttaaaactaaccaatagttaataaggataatttggtaaa 34032088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 26352175 - 26352089
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| |||| |||||||||||  |||| | | ||||||||||||| |||||||| ||||||||||| |||||| ||| |||||||||    
T  26352175 ttgtaccctccaattaatactcagcacgctactttcaaagtattacttttaaaactaaccaatagtcaataaggataatttggtaaa 26352089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 12484717 - 12484636
Alignment:
Q  80 cccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| ||||||||| || |||||| | || |||||||||| |||||||| ||||||||||| |||||| ||| |||||||||    
T  12484717 ccctccaattaatattaggcacactacttccaaagtattacttttaaaactaaccaatagtcaataaggataatttggtaaa 12484636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 14373433 - 14373388
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||    
T  14373433 ataatttggtaaaataaccattctttttcttttaatcattgcattt 14373388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 30293467 - 30293512
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||    
T  30293467 ataatttggtaaaataaccattatctttcttttaatcattgcattt 30293512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 34047253 - 34047208
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||  |||||||||||||||||||||||||||    
T  34047253 ataatttggtaaaataatcattctctttcttttaatcattgcattt 34047208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 39125734 - 39125779
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||    
T  39125734 ataatttagaaaaataacaattctctttcttttaatcattgcattt 39125779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 44257701 - 44257656
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||  |||||||||||||||||||||||||||    
T  44257701 ataatttggtaaaataattattctctttcttttaatcattgcattt 44257656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 52023993 - 52023948
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||  |||||||||||||||||||||||||||    
T  52023993 ataatttggtaaaataatcattctctttcttttaatcattgcattt 52023948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 27721015 - 27721101
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| |||| |||||||||||  |||||| | || |||||||||| |||||||| ||| |||||||||||||| ||| |||| ||||    
T  27721015 ttgtaccctccaattaatactcagcacactacttccaaagtattacttttaaaactaatcaatagttaataaggataatttgataaa 27721101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 44557079 - 44557033
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcatttt 223  Q
    ||||||||||||||||||| |||||||||||||||| | ||||||||    
T  44557079 ataatttggtaaaataacatttctctttcttttaattaatgcatttt 44557033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 14593365 - 14593320
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||| ||| ||||| |||||||||||||||||    
T  14593365 ataatttggtaaaataaccattatcttttttttaatcattgcattt 14593320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 26352101 - 26352056
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||  ||||||||||||||||| |||||||||    
T  26352101 ataatttggtaaaataaacattctctttcttttaataattgcattt 26352056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 44257765 - 44257689
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    ||||||||||| | ||||| | || |||| ||||| |||||||| ||||||||| |||||||| ||| |||||||||    
T  44257765 caattaatactctacacactacttccaaaatattacttttaaaactaaccaataattaataaggataatttggtaaa 44257689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 12591102 - 12591059
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcat 220  Q
    |||||||||||||||||  ||| |||||||||||||||||||||    
T  12591102 ataatttggtaaaataatcattatctttcttttaatcattgcat 12591059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 14593404 - 14593353
Alignment:
Q  110 caaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||||||||| |||||||| |||| ||||||||||||| ||| |||||||||    
T  14593404 caaagtattacttttaaaactaacaaatagttaataaggataatttggtaaa 14593353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 41857382 - 41857457
Alignment:
Q  86 aattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||||||||||||||||| | || |||| ||||| |||||||| ||||||||| |||  ||||||| |||| ||||    
T  41857382 aattaatactatgcacactacttccaaattattacttttaaaactaaccaataattacgaagaataatttgataaa 41857457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 11449712 - 11449678
Alignment:
Q  173 aagaataatttggtaaaataacaattctctttctt 207  Q
    |||||||||||||||||||||||||| ||||||||    
T  11449712 aagaataatttggtaaaataacaattttctttctt 11449678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 11799608 - 11799642
Alignment:
Q  183 tggtaaaataacaattctctttcttttaatcattg 217  Q
    ||||||||||||||||||||||||||||| |||||    
T  11799608 tggtaaaataacaattctctttcttttaaacattg 11799642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 25487145 - 25487231
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| ||||||| | || |||||||||| |||| ||| |||| ||||| ||||| | ||| |||||||||    
T  25487145 ttgtaccctccaattaatactctgcacactacttccaaagtattaatttttaaactaactaatagctaatatggataatttggtaaa 25487231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 27721089 - 27721135
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcatttt 223  Q
    |||||||| ||||||||  |||| |||||||||||||||||||||||    
T  27721089 ataatttgataaaataatcattcactttcttttaatcattgcatttt 27721135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 27721204 - 27721250
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcatttt 223  Q
    |||||||| ||||||||  ||||||||||||||||| ||||||||||    
T  27721204 ataatttgataaaataatcattctctttcttttaattattgcatttt 27721250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 30293397 - 30293479
Alignment:
Q  80 cccttcaattaatactatgcacaccaatttcaaagt-attatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| ||||||||||| ||||||| | || |||||| |||| ||| |||| ||||||||| |||||||| ||| |||||||||    
T  30293397 ccctacaattaatactctgcacactacttccaaagtaattactttaaaaactaaccaataattaataaggataatttggtaaa 30293479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 5717 - 5672
Alignment:
Q  175 gaataatttggtaaaataacaattctctttcttttaatcattgcat 220  Q
    ||||||||||||||||| || ||||||||| || ||||||||||||    
T  5717 gaataatttggtaaaattactattctctttattctaatcattgcat 5672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 8895025 - 8894980
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||||  ||||||||||||||| | |||||||    
T  8895025 ataatttggtaaaataacatctctctttcttttaattaatgcattt 8894980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 12484648 - 12484603
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    ||||||||||||||| |||||| |||||||||||||| ||| ||||    
T  12484648 ataatttggtaaaatgacaattatctttcttttaatctttgtattt 12484603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 16757288 - 16757239
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattattttt 124  Q
    |||| ||||||||||||||||||  |||| | ||||||||||||||||||    
T  16757288 ttgtacccttcaattaatactatatacacaactttcaaagtattattttt 16757239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 18794555 - 18794507
Alignment:
Q  174 agaataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    ||||||||||||||||||||||  | ||||||||||||| | |||||||    
T  18794555 agaataatttggtaaaataacatatttctttcttttaattaatgcattt 18794507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 29568034 - 29568082
Alignment:
Q  174 agaataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    ||||||||||||||||||||||  | ||||||||||||| | |||||||    
T  29568034 agaataatttggtaaaataacatatttctttcttttaattaatgcattt 29568082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 49402955 - 49402879
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    ||||||||| | ||||||  | || |||||||||| |||||||| ||| |||||||||||||| ||| ||| |||||    
T  49402955 caattaatattttgcacattacttccaaagtattacttttaaaactaatcaatagttaataaggataatttagtaaa 49402879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 37559629 - 37559553
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaata 151  Q
    |||| |||| ||||||||||| ||||||| | ||||||||||||| |||||||| ||||||||||||||||||||||    
T  37559629 ttgtaccctccaattaatactctgcacactattttcaaagtattacttttaaaactaaccaatagttaataagaata 37559553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 39765951 - 39765870
Alignment:
Q  80 cccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| ||||||||||| ||||||| | || |||||||||| |||||||| |||||||||||||||||| ||| |||||||||    
T  39765951 ccctccaattaatactctgcacactacttccaaagtattacttttaaaactaaccaatagttaataaggataatttggtaaa 39765870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 15160542 - 15160456
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| ||||||| | || |||| ||||| |||||||| |||||||||||||||||| ||| |||||||||    
T  15160542 ttgtaccctccaattaatactctgcacactacttccaaaatattacttttaaaactaaccaatagttaataaggataatttggtaaa 15160456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 15160468 - 15160423
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  15160468 ataatttggtaaaataaccattctctttcttttaatcattgcattt 15160423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 43724512 - 43724559
Alignment:
Q  176 aataatttggtaaaataacaattctctttcttttaatcattgcatttt 223  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||    
T  43724512 aataatttggtaaaataatcattctctttcttttaatcattgcatttt 43724559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 396236 - 396191
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||  |||||||||||||||||||||||||||    
T  396236 ataatttggtaaaataatcattctctttcttttaatcattgcattt 396191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 17655969 - 17656050
Alignment:
Q  80 cccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| ||||||||||| ||||||| | || |||||||||| |||||||| |||||||||  ||||||| ||| |||||||||    
T  17655969 ccctccaattaatactctgcacactacttgcaaagtattacttttaaaactaaccaataactaataaggataatttggtaaa 17656050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 43724449 - 43724525
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    ||||||||||| ||||||| | || || | ||||| |||||||| ||||||||||||||||| |||| |||||||||    
T  43724449 caattaatactctgcacactacttccataatattacttttaaaactaaccaatagttaataaaaataatttggtaaa 43724525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 12339851 - 12339898
Alignment:
Q  173 aagaataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    ||||||||||| |||||||||||||||||  |||||||||||||||||||    
T  12339851 aagaataattttgtaaaataacaattctc--tcttttaatcattgcattt 12339898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 396301 - 396224
Alignment:
Q  84 tcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||||||||||| ||||||    || || ||||||| |||||||| |||||||||||||||||| ||| |||||||||    
T  396301 tcaattaatactttgcacattgcttccatagtattacttttaaaactaaccaatagttaataaggataatttggtaaa 396224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 1511632 - 1511677
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    ||||||| ||||||| ||||||||||||||| ||||||||||||||    
T  1511632 ataatttagtaaaatgacaattctctttcttataatcattgcattt 1511677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 39765882 - 39765837
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||  |||||||||||||||||||||| ||||    
T  39765882 ataatttggtaaaataagcattctctttcttttaatcattgtattt 39765837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 40362497 - 40362578
Alignment:
Q  80 cccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| ||||||||||| ||||||| |  | |||| ||||| |||||||| |||||||||||||||||  ||| |||||||||    
T  40362497 ccctccaattaatactctgcacactacgtccaaaatattacttttaaaactaaccaatagttaataaagataatttggtaaa 40362578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 37559559 - 37559510
Alignment:
Q  173 aagaataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    ||||||||||  |||||||||  ||||||||| |||||||||||||||||    
T  37559559 aagaataattatgtaaaataatcattctctttattttaatcattgcattt 37559510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 40399889 - 40399844
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||||  ||||||||||||||| | |||||||    
T  40399889 ataatttggtaaaataacatatctctttcttttaattaatgcattt 40399844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 41679453 - 41679498
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||||  ||||||||||||||| | |||||||    
T  41679453 ataatttggtaaaataacacctctctttcttttaattaatgcattt 41679498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 42285970 - 42286051
Alignment:
Q  80 cccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||||||||||||||||||||||| | || |||||||||| ||||||||   |||||||||||||||| ||| |||||||||    
T  42285970 cccttcaattaatactatgcacacaacttccaaagtattacttttaaaaccgaccaatagttaataaggataatttggtaaa 42286051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 18292402 - 18292478
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    ||||||||||| ||||||| | || |||||||||| |||||||| |||||||||||||||||| ||| |||||||||    
T  18292402 caattaatactctgcacactacttccaaagtattacttttaaaactaaccaatagttaataaggataatttggtaaa 18292478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 31883851 - 31883927
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    ||||||||||| ||||||| | || |||||||||| |||||||| |||||||||||||||||| ||| |||||||||    
T  31883851 caattaatactctgcacactacttccaaagtattacttttaaaactaaccaatagttaataaggataatttggtaaa 31883927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 47187793 - 47187839
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcatttt 223  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  47187793 ataatttggtaaaataacaattctctttcttttaatcaatgcatttt 47187839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 6747357 - 6747402
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  6747357 ataatttggtaaaataaccattctctttcttttaatcattgcattt 6747402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 12977706 - 12977661
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  12977706 ataatttggtaaaataaccattctctttcttttaatcattgcattt 12977661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 12983164 - 12983119
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  12983164 ataatttggtaaaataaccattctctttcttttaatcattgcattt 12983119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 18292466 - 18292511
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  18292466 ataatttggtaaaataaccattctctttcttttaatcattgcattt 18292511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 37502381 - 37502462
Alignment:
Q  80 cccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| ||||||||||| ||||||| | || |||| ||||| |||||||| |||||||||||||||||| ||| |||||||||    
T  37502381 ccctccaattaatactctgcacactacttccaaaatattacttttaaaactaaccaatagttaataaggataatttggtaaa 37502462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 42286039 - 42286084
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  42286039 ataatttggtaaaataacaattctctttattttaatcattgcattt 42286084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 2297110 - 2297186
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    ||||||||||| ||||||| | || |||| |||||||||||||| |||||||||||||||||  ||| |||||||||    
T  2297110 caattaatactctgcacactacttccaaaatattatttttaaaactaaccaatagttaataaagataatttggtaaa 2297186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 12977770 - 12977694
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    ||||||||||| ||||||| | || |||||||||| |||||||| |||| ||||||||||||| ||| |||||||||    
T  12977770 caattaatactctgcacactacttccaaagtattacttttaaaactaactaatagttaataaggataatttggtaaa 12977694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 31929954 - 31929882
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataag 147  Q
    |||| |||| ||||||||||| ||||||| | || |||||||||| |||||||| ||||||||||||||||||    
T  31929954 ttgtaccctccaattaatactttgcacactacttccaaagtattacttttaaaactaaccaatagttaataag 31929882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 44567125 - 44567049
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    ||||||||||| ||||||| | || |||||||||| |||||||| |||||||||||||||||| ||| |||| ||||    
T  44567125 caattaatactttgcacactacttccaaagtattacttttaaaactaaccaatagttaataaggataatttgataaa 44567049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 715957 - 715871
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| ||| ||| | || |||||||||| |||||||| |||||||||| ||||||| ||| |||||||||    
T  715957 ttgtaccctccaattaatactctgctcactacttccaaagtattacttttaaaactaaccaatagctaataaggataatttggtaaa 715871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 6747283 - 6747369
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| ||||||| | || ||||||||||  ||||||| |||||||| ||||||||| ||| |||||||||    
T  6747283 ttgtaccctccaattaatactctgcacactacttccaaagtattacatttaaaactaaccaatggttaataaggataatttggtaaa 6747369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 18270635 - 18270721
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||| | ||||||| | || |||||||||| |||||||| ||| |||||||||||||| ||| |||||||||    
T  18270635 ttgtaccctccaattaatattctgcacactacttccaaagtattacttttaaaactaatcaatagttaataaggataatttggtaaa 18270721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 2297174 - 2297219
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||  |||||||||||||||||||||||||||    
T  2297174 ataatttggtaaaataatcattctctttcttttaatcattgcattt 2297219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 31883915 - 31883960
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||  |||||||||||||||||||||||||||    
T  31883915 ataatttggtaaaataatcattctctttcttttaatcattgcattt 31883960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 34274925 - 34274970
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||    
T  34274925 ataatttggtaaaataaccattctctttcttttaatcattgtattt 34274970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 12983203 - 12983152
Alignment:
Q  110 caaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||||||||| |||||||| |||||||||||||||||| ||| |||||||||    
T  12983203 caaagtattacttttaaaactaaccaatagttaataaggataatttggtaaa 12983152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 34274851 - 34274937
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| | ||||| |  | |||||||||| |||||||| |||||||||||||||||  ||| |||||||||    
T  34274851 ttgtaccctccaattaatactctacacactacatccaaagtattacttttaaaactaaccaatagttaataaagataatttggtaaa 34274937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 715883 - 715838
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||  ||| |||||||||||||||||||||||    
T  715883 ataatttggtaaaataatgattttctttcttttaatcattgcattt 715838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 18270709 - 18270754
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||  ||||| |||||||||||||||||||||    
T  18270709 ataatttggtaaaataatcattctatttcttttaatcattgcattt 18270754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 31196627 - 31196676
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattattttt 124  Q
    ||||||||||||||||||| |||  |||| ||||||||||||||||||||    
T  31196627 ttgtgcccttcaattaatattatatacactaatttcaaagtattattttt 31196676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 37502450 - 37502495
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||  |||||||||||||||||||||| ||||    
T  37502450 ataatttggtaaaataatcattctctttcttttaatcattgtattt 37502495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 40339600 - 40339645
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    ||||||||||||||||||| |||||||||||||||| | |||||||    
T  40339600 ataatttggtaaaataacatttctctttcttttaattaatgcattt 40339645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 40927254 - 40927303
Alignment:
Q  112 aagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||||||| |||||||| |||||||||||||||||| ||| |||||||||    
T  40927254 aagtattacttttaaaactaaccaatagttaataaggataatttggtaaa 40927303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 7900070 - 7900116
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcatttt 223  Q
    |||||||||||||||||| |||||| ||| ||||||||||| |||||    
T  7900070 ataatttggtaaaataactattctcattcatttaatcattgtatttt 7900116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 19303404 - 19303358
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcatttt 223  Q
    ||||||| ||||||||||| |||||||||||||||| | ||||||||    
T  19303404 ataatttagtaaaataacatttctctttcttttaattaatgcatttt 19303358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 25440929 - 25441015
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| ||||||| | || |||||||||| |||||||| ||| | |||| ||||||| ||| ||| |||||    
T  25440929 ttgtaccctccaattaatactctgcacactacttccaaagtattacttttaaaactaatcgatagctaataaggataatttagtaaa 25441015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 4268794 - 4268839
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||||  ||||||||||||||| | |||||||    
T  4268794 ataatttggtaaaataacatctctctttcttttaattaatgcattt 4268839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 25441003 - 25441048
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    ||||||| |||||||||  ||||||||||||||||||||| |||||    
T  25441003 ataatttagtaaaataatcattctctttcttttaatcattacattt 25441048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 31929875 - 31929834
Alignment:
Q  181 tttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||  ||||||||||| |||||||||||||||    
T  31929875 tttggtaaaataaacattctctttctgttaatcattgcattt 31929834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 18528572 - 18528516
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagtt 141  Q
    ||||||||||| ||||||| | || |||||||||| |||||||  ||||||||||||    
T  18528572 caattaatactctgcacactacttccaaagtattacttttaaagctaaccaatagtt 18528516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 21752124 - 21752088
Alignment:
Q  174 agaataatttggtaaaataacaattctctttctttta 210  Q
    |||||||||||||||||||||| || |||||||||||    
T  21752124 agaataatttggtaaaataacatttttctttctttta 21752088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 43584467 - 43584386
Alignment:
Q  80 cccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| ||||||||||| ||||||| | || |||| ||||| ||||||||||||||||||||||||||| ||| |||||||||    
T  43584467 ccctccaattaatactctgcacactacttccaaaatattacttttaaaattaaccaatagttaataaggataatttggtaaa 43584386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 7317085 - 7317171
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| |||| || | ||||||||||||| |||||||| ||| |||||||||||||| ||| |||||||||    
T  7317085 ttgtaccctccaattaatactctgcaaactattttcaaagtattacttttaaaactaatcaatagttaataaggataatttggtaaa 7317171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 10345028 - 10344942
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| ||||||| | || |||||||||| |||||||| |||||||||| ||||||| ||| |||||||||    
T  10345028 ttgtaccctccaattaatactctgcacactacttccaaagtattacttttaaaactaaccaatagctaataaggataatttggtaaa 10344942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 35765922 - 35765876
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcatttt 223  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  35765922 ataatttggtaaaataaccattctctttcttttaatcattgcatttt 35765876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 7317159 - 7317204
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  7317159 ataatttggtaaaataaccattctctttcttttaatcattgcattt 7317204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 10344954 - 10344909
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  10344954 ataatttggtaaaataaccattctctttcttttaatcattgcattt 10344909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 25362891 - 25362810
Alignment:
Q  80 cccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| ||||||||||| ||||||| | || |||||||||| |||||||| || ||||||||||||||| ||| |||||||||    
T  25362891 ccctccaattaatactctgcacactacttccaaagtattacttttaaaactagccaatagttaataaggatattttggtaaa 25362810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 32158673 - 32158718
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  32158673 ataatttggtaaaataaccattctctttcttttaatcattgcattt 32158718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 3024960 - 3024908
Alignment:
Q  170 aaaaagaataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||| |||||||||||||||||| |||||||||||||||||| ||||||||    
T  3024960 aaaaaggataatttggtaaaataaccattctctttcttttaatcgttgcattt 3024908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 35765986 - 35765910
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    ||||||||||| | ||||| ||||  ||||||||| |||||||| |||||||||||||||||| ||| |||||||||    
T  35765986 caattaatactctacacactaattctaaagtattacttttaaaactaaccaatagttaataaggataatttggtaaa 35765910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 3025027 - 3024941
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| ||||||  | || |||||||||| |||||||| |||| ||||||||| ||| ||| |||||||||    
T  3025027 ttgtaccctccaattaatactctgcacattacttccaaagtattacttttaaaactaactaatagttaaaaaggataatttggtaaa 3024941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 25362818 - 25362777
Alignment:
Q  181 tttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||| ||| |||||||||||||||||||||||||||    
T  25362818 tttggtaaaacaaccattctctttcttttaatcattgcattt 25362777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 43584398 - 43584353
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||  |||||||||||||||||||||| ||||    
T  43584398 ataatttggtaaaataatcattctctttcttttaatcattgtattt 43584353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 13974415 - 13974460
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||||  ||||||||||||||| | |||||||    
T  13974415 ataatttggtaaaataacacctctctttcttttaattaatgcattt 13974460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 34534416 - 34534465
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattattttt 124  Q
    |||| |||||||||||||||||||||||| | || |||| ||||||||||    
T  34534416 ttgtacccttcaattaatactatgcacactacttccaaaatattattttt 34534465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 3906 - 3820
Alignment:
Q  75 ttgtgcccttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    |||| |||| ||||||||||| ||||||| | || |||||||||| |||||||| |||||||||| ||||||| ||| |||||||||    
T  3906 ttgtaccctccaattaatactctgcacactacttccaaagtattacttttaaaactaaccaatagctaataaggataatttggtaaa 3820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 3832 - 3787
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||  ||| |||||||||||||||||||||||    
T  3832 ataatttggtaaaataatcattttctttcttttaatcattgcattt 3787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 4850517 - 4850472
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  4850517 ataatttggtaaaataaccattctctttcttttaatcattgcattt 4850472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 29400076 - 29400121
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  29400076 ataatttggtaaaataaccattctctttcttttaatcattgcattt 29400121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 4850581 - 4850505
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    ||||||||||| ||||||| | || |||| ||||| |||||||| |||||||||||||||||| ||| |||||||||    
T  4850581 caattaatactctgcacactacttccaaaatattacttttaaaactaaccaatagttaataaggataatttggtaaa 4850505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 19689394 - 19689473
Alignment:
Q  82 cttcaattaatactatgcacaccaatttcaaagtattatttttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    ||||||||||||||  |||||| | ||| ||||||||| |||||||| ||| ||||||||||||| |||| |||||||||    
T  19689394 cttcaattaatactcagcacactacttttaaagtattacttttaaaactaaacaatagttaataataataatttggtaaa 19689473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 19689460 - 19689507
Alignment:
Q  176 aataatttggtaaaataacaattctctttcttttaatcattgcatttt 223  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  19689460 aataatttggtaaaataaccattatctttcttttaatcattgcatttt 19689507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 32429418 - 32429463
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||  |||||||||||||||||||||||||||    
T  32429418 ataatttggtaaaataatcattctctttcttttaatcattgcattt 32429463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 13503855 - 13503810
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    ||||||||||||||||||| |||||||||||||||| | |||||||    
T  13503855 ataatttggtaaaataacatttctctttcttttaattaatgcattt 13503810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 210
Target Start/End: Complemental strand, 13597965 - 13597932
Alignment:
Q  177 ataatttggtaaaataacaattctctttctttta 210  Q
    ||||||||||||||||||||||||||||||||||    
T  13597965 ataatttggtaaaataacaattctctttctttta 13597932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 1502764 - 1502719
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||||  ||| ||||||||||||| |||||||    
T  1502764 ataatttggtaaaataacatctctatttcttttaatcaatgcattt 1502719  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 13011359 - 13011314
Alignment:
Q  177 ataatttggtaaaataacaattctctttcttttaatcattgcattt 222  Q
    |||||||||||||||||||  ||||||||||||||| | |||||||    
T  13011359 ataatttggtaaaataacatctctctttcttttaattaatgcattt 13011314  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 19689250 - 19689287
Alignment:
Q  110 caaagtattatttttaaaattaaccaatagttaataag 147  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  19689250 caaagtattacttttaaaactaaccaatagttaataag 19689287  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 32429351 - 32429430
Alignment:
Q  85 caattaatactatgcacaccaatttcaaagtattatt---tttaaaattaaccaatagttaataagaatagtttggtaaa 161  Q
    ||||||||| | ||||||| | |||||||||| ||||   ||||||| |||||||||||||||||  ||| |||||||||    
T  32429351 caattaatattctgcacactactttcaaagtagtattacttttaaaactaaccaatagttaataaagataatttggtaaa 32429430  T

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Target: scaffold0565 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 9913 - 9877
Alignment:
Q  258 tatgtgtaaaaactttaaacgataatcattttgaaac 294  Q
    |||||||||||||||||||||| | ||||||||||||    
T  9913 tatgtgtaaaaactttaaacgacattcattttgaaac 9877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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