View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_219 (Length: 301)

Name: NF11453A_low_219
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_219
NF11453A_low_219
[»] chr1 (5 HSPs)
chr1 (177-301)||(43866247-43866372)
chr1 (14-99)||(43866420-43866505)
chr1 (187-266)||(50204522-50204602)
chr1 (14-80)||(47523919-47523984)
chr1 (190-266)||(33966641-33966718)
[»] chr2 (3 HSPs)
chr2 (14-61)||(37154638-37154685)
chr2 (14-56)||(25438564-25438606)
chr2 (14-56)||(44673436-44673478)
[»] chr8 (8 HSPs)
chr8 (14-80)||(3376122-3376187)
chr8 (14-56)||(1548412-1548454)
chr8 (14-56)||(23033650-23033692)
chr8 (14-80)||(29168300-29168365)
chr8 (14-57)||(20901040-20901083)
chr8 (14-56)||(3117978-3118020)
chr8 (184-266)||(1468978-1469053)
chr8 (14-56)||(34784291-34784333)
[»] chr6 (6 HSPs)
chr6 (12-79)||(18133693-18133759)
chr6 (190-264)||(25101051-25101126)
chr6 (14-56)||(13425491-13425533)
chr6 (14-79)||(23889835-23889899)
chr6 (187-264)||(6539507-6539585)
chr6 (226-266)||(23890006-23890047)
[»] chr4 (7 HSPs)
chr4 (14-61)||(39598901-39598948)
chr4 (14-56)||(2588283-2588325)
chr4 (14-56)||(5650533-5650575)
chr4 (14-56)||(16497502-16497544)
chr4 (14-80)||(4289871-4289936)
chr4 (18-80)||(49577358-49577419)
chr4 (222-266)||(55911184-55911229)
[»] scaffold0302 (1 HSPs)
scaffold0302 (14-80)||(17336-17401)
[»] chr7 (8 HSPs)
chr7 (14-56)||(19886840-19886882)
chr7 (14-56)||(32775439-32775481)
chr7 (187-266)||(32368113-32368193)
chr7 (14-56)||(12859018-12859060)
chr7 (178-266)||(19781086-19781175)
chr7 (18-55)||(36167525-36167562)
chr7 (236-272)||(23636686-23636722)
chr7 (187-257)||(46082489-46082560)
[»] chr5 (6 HSPs)
chr5 (14-56)||(7992180-7992222)
chr5 (187-266)||(41377831-41377911)
chr5 (187-265)||(15402496-15402575)
chr5 (187-265)||(15400886-15400965)
chr5 (14-57)||(28276978-28277021)
chr5 (187-267)||(43281145-43281226)
[»] chr3 (5 HSPs)
chr3 (14-56)||(7323111-7323153)
chr3 (14-56)||(32130431-32130473)
chr3 (14-80)||(7227324-7227389)
chr3 (14-56)||(53208478-53208520)
chr3 (187-264)||(7227137-7227215)


Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 177 - 301
Target Start/End: Complemental strand, 43866372 - 43866247
Alignment:
Q  177 gcgaccttgcgtaaagtcgaagcacggttgaggtgttgtgggccataggatcgtacgatc-tacgaaccagcactcgatcctgactacaatagtagtaag 275  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||    
T  43866372 gcgaccttgcctaaagtcgaagcacagttgaggtgttgtgggccataggatcgtaagatcctacgaaccagcactcgatcctgactacaatggtagtaag 43866273  T
Q  276 tactcaaattggttcctggatttgta 301  Q
    ||||||||||||||||||||||||||    
T  43866272 tactcaaattggttcctggatttgta 43866247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 43866505 - 43866420
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatcagtagcttttttgatagagttgagtcgaagcatggttgagggg 99  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43866505 gaacgtaaacacgaggaacgtaacacggttcgtaagtaggatcagtagcttttttgatagagttgagtcgaagcatggttgagggg 43866420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 266
Target Start/End: Complemental strand, 50204602 - 50204522
Alignment:
Q  187 gtaaagtcgaagcacggttgaggtgttgtgggccataggatcgtacgatc-tacgaaccagcactcgatcctgactacaat 266  Q
    |||||||||||||||| |||||||| |||||  | ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  50204602 gtaaagtcgaagcacgattgaggtgctgtggaacgtaggatcatacgatcctacgaaccagcactcgatcctgactacaat 50204522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 47523984 - 47523919
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatcagtagcttttttgatagagttgag 80  Q
    |||||||||||| ||||||||| |||||||||||||||||||| ||||  || ||||||||||||||    
T  47523984 gaacgtaaacacaaggaacgtaacacggttcgtaagtaggatcggtag-gttgttgatagagttgag 47523919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 266
Target Start/End: Complemental strand, 33966718 - 33966641
Alignment:
Q  190 aagtcgaagcacggttgaggtgttgtgggccataggatcgtacgatc-tacgaaccagcactcgatcctgactacaat 266  Q
    ||||| ||||||||||||||||  ||||  | ||| |||||| |||| ||||| |||||||||||||||| |||||||    
T  33966718 aagtcaaagcacggttgaggtgccgtggcacgtagaatcgtaagatcctacgagccagcactcgatcctggctacaat 33966641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 37154638 - 37154685
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatcagtag 61  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  37154638 gaacgtaaacacgaggaacgtaacacggttcgtaagtaggatcagtag 37154685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 25438606 - 25438564
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatc 56  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  25438606 gaacgtaaacacgaggaacgtaacacggttcgtaagtaggatc 25438564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 44673478 - 44673436
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatc 56  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  44673478 gaacgtaaacacgaggaacgtaacacggttcgtaagtaggatc 44673436  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 3376122 - 3376187
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatcagtagcttttttgatagagttgag 80  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||  || ||||||||||||||    
T  3376122 gaacgtaaacacgaggaacgtaacacggttcgtaagtaggatcggtag-gttgttgatagagttgag 3376187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 1548454 - 1548412
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatc 56  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  1548454 gaacgtaaacacgaggaacgtaacacggttcgtaagtaggatc 1548412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 23033692 - 23033650
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatc 56  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  23033692 gaacgtaaacacgaggaacgtaacacggttcgtaagtaggatc 23033650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 29168300 - 29168365
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatcagtagcttttttgatagagttgag 80  Q
    ||||||||||| |||||||||| |||||||||||||||||||| ||||  || ||||||||||||||    
T  29168300 gaacgtaaacatgaggaacgtaacacggttcgtaagtaggatcggtag-gttgttgatagagttgag 29168365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 20901083 - 20901040
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatca 57  Q
    |||||||||||||||||||||| |||||||||||||| ||||||    
T  20901083 gaacgtaaacacgaggaacgtaacacggttcgtaagtgggatca 20901040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 3118020 - 3117978
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatc 56  Q
    |||||||||||||||||||||| || |||||||||||||||||    
T  3118020 gaacgtaaacacgaggaacgtaacatggttcgtaagtaggatc 3117978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 1469053 - 1468978
Alignment:
Q  184 tgcgtaaagtcgaagcacggttgaggtgttgtgggccataggatcgtacgatctacgaaccagcactcgatcctgactacaat 266  Q
    |||||||| || ||||||||||||||| |||||||   |||||||       |||||||||||||||||||||||||||||||    
T  1469053 tgcgtaaaatcaaagcacggttgaggtattgtgggatgtaggatc-------ctacgaaccagcactcgatcctgactacaat 1468978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 34784291 - 34784333
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatc 56  Q
    |||| ||||||||||||||||| ||||||| ||||||||||||    
T  34784291 gaacataaacacgaggaacgtaacacggtttgtaagtaggatc 34784333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 18133693 - 18133759
Alignment:
Q  12 atgaacgtaaacacgaggaacgtagcacggttcgtaagtaggatcagtagcttttttgatagagttga 79  Q
    ||||||| |||||||||||||||| |||||||| ||||||||||| ||||  ||||||||||||||||    
T  18133693 atgaacgaaaacacgaggaacgtaacacggttcataagtaggatcggtag-gtttttgatagagttga 18133759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 264
Target Start/End: Original strand, 25101051 - 25101126
Alignment:
Q  190 aagtcgaagcacggttgaggtgttgtgggccataggatcgtacgat-ctacgaaccagcactcgatcctgactaca 264  Q
    ||||||||||||||||||||||  ||||| ||||| |||||| ||| |||||| |||||||||||||||| |||||    
T  25101051 aagtcgaagcacggttgaggtgccgtgggacatagaatcgtaagatcctacgagccagcactcgatcctggctaca 25101126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 13425491 - 13425533
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatc 56  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  13425491 gaacgtaaacacgaggaacgtaacacggttcgtaagtaggatc 13425533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 23889835 - 23889899
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatcagtagcttttttgatagagttga 79  Q
    ||||| |||||||||||||||| |||||||||| ||||||||| ||||  ||||||||||||||||    
T  23889835 gaacgaaaacacgaggaacgtaacacggttcgttagtaggatcggtag-gtttttgatagagttga 23889899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 264
Target Start/End: Original strand, 6539507 - 6539585
Alignment:
Q  187 gtaaagtcgaagcacggttgaggtgttgtgggccataggatcgtacgatc-tacgaaccagcactcgatcctgactaca 264  Q
    ||||||| |||||||||||||| ||  |||||   ||||||| ||||||| ||||| ||||||||||||||| ||||||    
T  6539507 gtaaagttgaagcacggttgagatgacgtggggtgtaggatcatacgatcctacgatccagcactcgatccttactaca 6539585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 23890006 - 23890047
Alignment:
Q  226 atcgtacgatc-tacgaaccagcactcgatcctgactacaat 266  Q
    ||||||||||| ||||| ||||||||||||||||||||||||    
T  23890006 atcgtacgatcctacgagccagcactcgatcctgactacaat 23890047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 39598901 - 39598948
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatcagtag 61  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||    
T  39598901 gaacgtaaacacgaggaacgtagcactgttcgtaagtaggatcggtag 39598948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 2588283 - 2588325
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatc 56  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  2588283 gaacgtaaacacgaggaacgtaacacggttcgtaagtaggatc 2588325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 5650533 - 5650575
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatc 56  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  5650533 gaacgtaaacacgaggaacgtaacacggttcgtaagtaggatc 5650575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 16497502 - 16497544
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatc 56  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  16497502 gaacgtaaacacgaggaacgtaacacggttcgtaagtaggatc 16497544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 4289871 - 4289936
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatcagtagcttttttgatagagttgag 80  Q
    |||| ||||||||||||||||| | |||||||||||||||||| ||||  || ||||||||||||||    
T  4289871 gaacttaaacacgaggaacgtaacccggttcgtaagtaggatcggtag-gttgttgatagagttgag 4289936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 49577358 - 49577419
Alignment:
Q  18 gtaaacacgaggaacgtagcacggttcgtaagtaggatcagtagcttttttgatagagttgag 80  Q
    |||||||||||||||||| ||| |||| ||||||||||| ||||  || ||||||||||||||    
T  49577358 gtaaacacgaggaacgtaacacagttcataagtaggatcggtag-gttgttgatagagttgag 49577419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 55911229 - 55911184
Alignment:
Q  222 taggatcgtacgatc-tacgaaccagcactcgatcctgactacaat 266  Q
    |||||||||| |||| ||||||||||||||||||| ||||||||||    
T  55911229 taggatcgtatgatcctacgaaccagcactcgatcttgactacaat 55911184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 17401 - 17336
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatcagtagcttttttgatagagttgag 80  Q
    |||||||||||||||||||||| |||||||||||||||||| |  || |||| ||||||||||||||    
T  17401 gaacgtaaacacgaggaacgtaacacggttcgtaagtaggagcgata-ctttgttgatagagttgag 17336  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 19886882 - 19886840
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatc 56  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  19886882 gaacgtaaacacgaggaacgtaacacggttcgtaagtaggatc 19886840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 32775481 - 32775439
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatc 56  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  32775481 gaacgtaaacacgaggaacgtaacacggttcgtaagtaggatc 32775439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 266
Target Start/End: Complemental strand, 32368193 - 32368113
Alignment:
Q  187 gtaaagtcgaagcacggttgaggtgttgtgggccataggatcgtacgatc-tacgaaccagcactcgatcctgactacaat 266  Q
    ||||||||||||||| |||||| ||  ||||| | |||| |||||||||| ||||||||||||||||| || |||||||||    
T  32368193 gtaaagtcgaagcacagttgagatgccgtgggacgtagggtcgtacgatcctacgaaccagcactcgacccggactacaat 32368113  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 12859018 - 12859060
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatc 56  Q
    ||||||||||| |||||||||| ||||||||||||||||||||    
T  12859018 gaacgtaaacatgaggaacgtaacacggttcgtaagtaggatc 12859060  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 19781086 - 19781175
Alignment:
Q  178 cgaccttgcgtaaagtcgaagcacggttgaggtgttgtgggccataggatcgtacgat-ctacgaaccagcactcgatcctgactacaat 266  Q
    |||||||| ||||||||| |||||  ||||||||| || ||   ||||||||||| || |||| |||||||||||| |||||||||||||    
T  19781086 cgaccttgagtaaagtcggagcacaattgaggtgtcgttggatgtaggatcgtactattctacaaaccagcactcgttcctgactacaat 19781175  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 36167525 - 36167562
Alignment:
Q  18 gtaaacacgaggaacgtagcacggttcgtaagtaggat 55  Q
    |||||||||||||||||| |||||||||||||||||||    
T  36167525 gtaaacacgaggaacgtaacacggttcgtaagtaggat 36167562  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 272
Target Start/End: Complemental strand, 23636722 - 23636686
Alignment:
Q  236 ctacgaaccagcactcgatcctgactacaatagtagt 272  Q
    ||||||||||||||||||||||||||||||| |||||    
T  23636722 ctacgaaccagcactcgatcctgactacaatggtagt 23636686  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 46082489 - 46082560
Alignment:
Q  187 gtaaagtcgaagcacggttgaggtgttgtgggccataggatcgtacgat-ctacgaaccagcactcgatcct 257  Q
    |||||||||||||||||||||||||  | ||| ||||| |||||||||| ||| || |||||||| ||||||    
T  46082489 gtaaagtcgaagcacggttgaggtgcggagggacatagaatcgtacgatcctatgagccagcactggatcct 46082560  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 7992180 - 7992222
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatc 56  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  7992180 gaacgtaaacacgaggaacgtaacacggttcgtaagtaggatc 7992222  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 266
Target Start/End: Original strand, 41377831 - 41377911
Alignment:
Q  187 gtaaagtcgaagcacggttgaggtgttgtgggccataggatcgtacgat-ctacgaaccagcactcgatcctgactacaat 266  Q
    |||||||||||||||| ||||||||  |||||   |||||||||||||| |||| ||||||| ||| ||||||||||||||    
T  41377831 gtaaagtcgaagcacgattgaggtgccgtgggaagtaggatcgtacgatcctacaaaccagctctcaatcctgactacaat 41377911  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 265
Target Start/End: Original strand, 15402496 - 15402575
Alignment:
Q  187 gtaaagtcgaagcacggttgaggtgttgtgggccataggatcgtacgatc-tacgaaccagcactcgatcctgactacaa 265  Q
    |||||||||||| ||| ||||| ||   |||| ||||||| ||||| ||| |||||||||||||||||||||||||||||    
T  15402496 gtaaagtcgaagtacgattgagatgccatgggacataggaccgtacaatcctacgaaccagcactcgatcctgactacaa 15402575  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 265
Target Start/End: Original strand, 15400886 - 15400965
Alignment:
Q  187 gtaaagtcgaagcacggttgaggtgttgtgggccataggatcgtacgatc-tacgaaccagcactcgatcctgactacaa 265  Q
    |||||||||||| ||| ||||||||  | ||| | |||||||||||| || |||||||||||||||||| |||| |||||    
T  15400886 gtaaagtcgaagtacgattgaggtgccgcgggacgtaggatcgtacggtcctacgaaccagcactcgattctgattacaa 15400965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 28277021 - 28276978
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatca 57  Q
    ||||||||| |||||||||||| ||| |||||||||||||||||    
T  28277021 gaacgtaaatacgaggaacgtaacacagttcgtaagtaggatca 28276978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 43281145 - 43281226
Alignment:
Q  187 gtaaagtcgaagcacggttgaggtgttgtgggccataggatcgtacgatc-tacgaaccagcactcgatcctgactacaata 267  Q
    |||||||||||||| | ||||||||  |||||   ||| ||||||||||| || ||||||||||  ||||||||||||||||    
T  43281145 gtaaagtcgaagcatgattgaggtgccgtgggatgtagaatcgtacgatcctatgaaccagcacgagatcctgactacaata 43281226  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 7323153 - 7323111
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatc 56  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  7323153 gaacgtaaacacgaggaacgtaacacggttcgtaagtaggatc 7323111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 32130473 - 32130431
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatc 56  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  32130473 gaacgtaaacacgaggaacgtaacacggttcgtaagtaggatc 32130431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 7227389 - 7227324
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatcagtagcttttttgatagagttgag 80  Q
    |||||||||||||||||| ||| |||||||||||| ||||||| ||||  || ||||||||||||||    
T  7227389 gaacgtaaacacgaggaatgtaccacggttcgtaattaggatcggtag-gttgttgatagagttgag 7227324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 53208478 - 53208520
Alignment:
Q  14 gaacgtaaacacgaggaacgtagcacggttcgtaagtaggatc 56  Q
    |||||||||||||||||||||| |||||||| |||||||||||    
T  53208478 gaacgtaaacacgaggaacgtaacacggttcataagtaggatc 53208520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 264
Target Start/End: Complemental strand, 7227215 - 7227137
Alignment:
Q  187 gtaaagtcgaagcacggttgaggtgttgtgggccataggatcgtacgat-ctacgaaccagcactcgatcctgactaca 264  Q
    |||||||||||||| ||| |||||| |||||| | ||| ||||||| || ||| || ||||||||| ||||||||||||    
T  7227215 gtaaagtcgaagcatggtcgaggtgctgtgggacgtagaatcgtacaatcctaagagccagcactcaatcctgactaca 7227137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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