View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_222 (Length: 299)
Name: NF11453A_low_222
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_222 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 21 - 299
Target Start/End: Complemental strand, 36125516 - 36125238
Alignment:
| Q |
21 |
aaaagcttctcatcttttccataatagaatgcaactagagggagtagattaggatgtgtcaaccttccaagccttctcatatgatcatagaactcttttt |
120 |
Q |
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| T |
36125516 |
aaaagcttctcatcttttccataatagaatgcaactagagggagtagattaggatgtgtcaaccttccaagccttctcatatgatcatagaactcttttt |
36125417 |
T |
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| Q |
121 |
tgccaactttgttcatgtgcttaaatcttttcactacaacaactggtcctgtcaataccatagccttgtaagtggatccaaaacttccacttcccaaaac |
220 |
Q |
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| T |
36125416 |
tgccaactttgttcatgtgcttaaatcttttcactacaacaactggtcctgtcaataccatagccttgtaagtggatccaaaacttccacttcccaaaac |
36125317 |
T |
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| Q |
221 |
ctcagctgaggcccttaacaagtcctgcaaatcaaactcaaccctttcgttcgtaacgaagttcaaatcttcatctttg |
299 |
Q |
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| T |
36125316 |
ctctgctgaggcccttaacaagtcctgcaaatcaaactcaaccctttcgttcgtaacgaagttcaaatcttcatctttg |
36125238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 42509377 - 42509247
Alignment:
| Q |
24 |
agcttctcatcttttccataatagaatgcaactagagggagtagattaggatgtgtcaaccttccaagccttctcatatgatcatagaactcttttttgc |
123 |
Q |
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| T |
42509377 |
agcttctcttcttttctataatagtaagcaacaagaggaatcaaattaggatggttcaaccttccaatccttctcatatgctcttgaaactcttccttcc |
42509278 |
T |
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| Q |
124 |
caactttgttcatgtgcttaaatcttttcac |
154 |
Q |
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| T |
42509277 |
ctacattgttcatttgcttaaacctcttcac |
42509247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 45 - 235
Target Start/End: Complemental strand, 1255047 - 1254857
Alignment:
| Q |
45 |
tagaatgcaactagagggagtagattaggatgtgtcaaccttccaagccttctcatatgatcatagaactcttttttgccaactttgttcatgtgcttaa |
144 |
Q |
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| T |
1255047 |
tagaatgcaataagaggaagtagattaggatgtgtcaaacttccaagctttttcatgtgttcaaaaaactcttgtttaccaacattattcatgtgcctaa |
1254948 |
T |
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| Q |
145 |
atcttttcactacaacaactggtcctgtcaataccatagccttgtaagtggatccaaaacttccacttcccaaaacctcagctgaggccct |
235 |
Q |
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| T |
1254947 |
atctcttaaccaccacagttggtccattcaaaactattgccttataagttgatccaaaacttccacttccaagcacttcagctgaagccct |
1254857 |
T |
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