View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_225 (Length: 297)
Name: NF11453A_low_225
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_225 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 36075368 - 36075101
Alignment:
| Q |
13 |
gagatagttgaagttcttataagtgaggaattggttggaagtggcaagtgtggctctaagaaagaagttgcacacaatagggcagnnnnnnntgctttgg |
112 |
Q |
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| T |
36075368 |
gagatagttgaagttcttataagtgaggaattggttggaagtggcaagtgtggctctaagaaagaaattgcacacaatagggcagcaaaaaatgctttgg |
36075269 |
T |
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| Q |
113 |
aatatatgaaaagaaaatttggtataagtacatctaccagagatgatgctaccgaagatttagattcttctcttagatgcaatggaggtccagctgctat |
212 |
Q |
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| T |
36075268 |
aatatatgaaaagaaaatttggtataagtacatctacaagagatgatgctaccgaagattttgattctcctcctagatgcaatggaggtccagctgctat |
36075169 |
T |
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| Q |
213 |
cgaagatttaagtttcccatctaaatataatggaggtccagatgctaccgaagatttaggttcccctt |
280 |
Q |
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| T |
36075168 |
cgaagatttaagttttccatctaaatataatggaggttcagatgctaccgaagatttaggttcccctt |
36075101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 275
Target Start/End: Complemental strand, 36146736 - 36146481
Alignment:
| Q |
20 |
ttgaagttcttataagtgaggaattggttggaagtggcaagtgtggctctaagaaagaagttgcacacaatagggcagnnnnnnntgctttggaatatat |
119 |
Q |
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| T |
36146736 |
ttgaagtccttataaatgaggagtttgttggaagtggtgtttatggctctaagaaagaaattgcacacaatagggcagcaaaaaatgctttggaaaatat |
36146637 |
T |
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| Q |
120 |
gaaaagaaaatttggtataagtacatctaccagagatgatgctaccgaagatttagattcttctcttagatgcaatggaggtccagctgctatcgaagat |
219 |
Q |
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| T |
36146636 |
ggaaaaaattcttggtataagcacgtctacaaaagaagatgttaccgaagatttagattccccttctaagtgcaatggaggttcagatgttaccgaaaat |
36146537 |
T |
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| Q |
220 |
ttaagtttcccatctaaatataatggaggtccagatgctaccgaagatttaggttc |
275 |
Q |
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| T |
36146536 |
ttaagttccccatctaaatgcaatggaggtcaagatgctaccgaagatttaggttc |
36146481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 36075140 - 36075068
Alignment:
| Q |
193 |
aatggaggtccagctgctatcgaagatttaagtttcccatctaaatataatggaggtccagatgctaccgaag |
265 |
Q |
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| T |
36075140 |
aatggaggttcagatgctaccgaagatttaggttccccttctaaatgtaacggaggtccagatgctaccgaag |
36075068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 36146503 - 36146443
Alignment:
| Q |
157 |
gatgctaccgaagatttagattcttctcttagatgcaatggaggtccagctgctatcgaag |
217 |
Q |
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| T |
36146503 |
gatgctaccgaagatttaggttctcctcctaagtgcaatggagatctagatgctatcgaag |
36146443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 279
Target Start/End: Original strand, 26530575 - 26530689
Alignment:
| Q |
165 |
cgaagatttagattcttctcttagatgcaatggaggtccagctgctatcgaagatttaagtttcccatctaaatataatggaggtccagatgctaccgaa |
264 |
Q |
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||||||||||| ||| ||| || ||||||||||||| || ||||| | |||||||| |||||||| |||| | | ||||||| |||||||| ||||| |
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| T |
26530575 |
cgaagatttaggttcccctcctaagtgcaatggaggtctagatgctacccaagatttaggtttcccacctaagtgcattggaggttcagatgctgccgaa |
26530674 |
T |
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| Q |
265 |
gatttaggttcccct |
279 |
Q |
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| T |
26530675 |
gatttgggtttccct |
26530689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 26530284 - 26530525
Alignment:
| Q |
18 |
agttgaagttcttataagtgaggaattggttggaagtggcaagtgtggctctaagaaagaagttgcacacaatagggcagnnnnnnntgctttggaatat |
117 |
Q |
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||||||||| ||||||| |||||| || ||||||||||| | ||| |||||||||||| |||||| ||||||||||| || |||| || || |
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| T |
26530284 |
agttgaagtccttataaatgaggagtttgttggaagtggtgtttatggttctaagaaagaaattgcacgcaatagggcagcaaaaaatgttttgcaaaat |
26530383 |
T |
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| Q |
118 |
atgaaaagaaaatttggtataagtacatctaccagagatgatgctaccgaagatttagattcttctcttagatgcaatggaggtccagctgctatcgaag |
217 |
Q |
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| T |
26530384 |
atggaaattttttttggtataagtgcatctaccaacgaagttgctaccaaagatttagatttcccttctaagtgcgatgaaagttcagatgctaccgaag |
26530483 |
T |
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| Q |
218 |
atttaagtttcccatctaaatataatggaggtccagatgcta |
259 |
Q |
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| T |
26530484 |
atttaagttccctacctaagtgcaatggaggtccaaatgcta |
26530525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 26530572 - 26530636
Alignment:
| Q |
210 |
tatcgaagatttaagtttcccatctaaatataatggaggtccagatgctaccgaagatttaggtt |
274 |
Q |
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||||||||||||| ||| ||| |||| | |||||||||| |||||||||| |||||||||||| |
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| T |
26530572 |
tatcgaagatttaggttcccctcctaagtgcaatggaggtctagatgctacccaagatttaggtt |
26530636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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