View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_226 (Length: 296)
Name: NF11453A_low_226
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_226 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 43021431 - 43021151
Alignment:
| Q |
16 |
atccaagttaaagtgtaatcaattaatgaaattaaacaaatgaaatccagagtggggtctgtaaaatagaagcagacacacaaagttggggcccttgtgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43021431 |
atccaagttaaagtgtaatcaattaatgaaattaaacaaatgaaatgcagagtggggtctgaaaaatagaagcagacacacaaagttggggcccttgtgg |
43021332 |
T |
|
| Q |
116 |
aagaatctaaaaaaggtggataggagccaaattatgtttatatgttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43021331 |
aagaatctaaaaaaggtggataggagccatattatgtttatatgttatattcgtttctgcactactaccattcctcctgcgacttctttatgggaccaaa |
43021232 |
T |
|
| Q |
216 |
tctctggcataccaagaagccatataaaactgctagtaaaaatgctatctctggctatatatgcccccttcaaaagtatcc |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43021231 |
tctctggcataccaagaagccatataaaactgctagtaaaaatgctatctctggccatatatgcccccttcaaaagtatcc |
43021151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 159 - 296
Target Start/End: Original strand, 13675644 - 13675781
Alignment:
| Q |
159 |
gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat |
258 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||| ||||| ||||||||| || | |||||||||||||||| |||||||||| |||||| | |||| |
|
|
| T |
13675644 |
gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggactaattttctggcataccaagaaaccatataaaaatgctagcacaaat |
13675743 |
T |
|
| Q |
259 |
gctatctctggctatatatgcccccttcaaaagtatcc |
296 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13675744 |
gctatctctatctatatatgcccccttcaaaagtatcc |
13675781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 159 - 296
Target Start/End: Complemental strand, 19965075 - 19964938
Alignment:
| Q |
159 |
gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat |
258 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||| ||||| |||||||||||| | | ||| |||||||||| |||||||||| |||||| | |||| |
|
|
| T |
19965075 |
gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggaccaattttttgggataccaagaaaccatataaaaatgctagcacaaat |
19964976 |
T |
|
| Q |
259 |
gctatctctggctatatatgcccccttcaaaagtatcc |
296 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19964975 |
gctatctctatctatatatgcccccttcaaaagtatcc |
19964938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 159 - 261
Target Start/End: Complemental strand, 50805826 - 50805724
Alignment:
| Q |
159 |
gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat |
258 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||| ||||| |||||||||||| | ||| |||||||||||| |||||||||| |||||| | |||| |
|
|
| T |
50805826 |
gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggaccaattttctagcataccaagaaaccatataaaaatgctagcacaaat |
50805727 |
T |
|
| Q |
259 |
gct |
261 |
Q |
| |
|
||| |
|
|
| T |
50805726 |
gct |
50805724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 159 - 261
Target Start/End: Original strand, 50870051 - 50870153
Alignment:
| Q |
159 |
gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat |
258 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||| ||||| ||||||||| || | | | | |||||||||| |||||||||| |||||| | |||| |
|
|
| T |
50870051 |
gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggactaatttttttgtataccaagaaaccatataaaaatgctagcacaaat |
50870150 |
T |
|
| Q |
259 |
gct |
261 |
Q |
| |
|
||| |
|
|
| T |
50870151 |
gct |
50870153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University