View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_230 (Length: 295)
Name: NF11453A_low_230
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_230 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 4 - 289
Target Start/End: Complemental strand, 25545417 - 25545132
Alignment:
| Q |
4 |
tcgaagaatatgagggatgaagagttgtatctgcgacttatggaattaacataagggtatgcaaagagttgtagactccttggcatatcattcaaggaac |
103 |
Q |
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| T |
25545417 |
tcgaaaaaaatgagggattaagagttgtatctgcgacttatggaattaacataagggtatgcaaagagttgtagactccttggcatatcattcaaggaac |
25545318 |
T |
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| Q |
104 |
acaaatctttagaaagtaatcaatactatcaccaagagctagttagaatccacagcttgttctacgcaaactgcaaagtaaaactccgatggttaacccg |
203 |
Q |
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| T |
25545317 |
acaaatctttagaaagtaatcaatactatcaccaagagctagttagaatccacagcttgttctccgcaaactgcaaagtaaaactccgatggttaacccg |
25545218 |
T |
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| Q |
204 |
acaaaagaccaaatggcagcaagaatatgagagagcagcagatacacagaaaaggaaccgaaggaatcaatggcataatccaactc |
289 |
Q |
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| T |
25545217 |
acaaaagaccaaatggcagcaagaatatgagagagcagcaggtacacagaaaaggaaccgaaggaatcaatggcataatccaactc |
25545132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 1154496 - 1154608
Alignment:
| Q |
175 |
tgcaaagtaaaactccgatggttaacccgacaaaagaccaaatggcagcaagaatatgagagagcagcagatacacagaaaaggaaccgaaggaatcaat |
274 |
Q |
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| T |
1154496 |
tgcaaagtaaaactccgatggttaacctggcaaaagaccaaacggcagcaagaatatgatagagcagtagttacacagaaaaggaaccgaaggaattaat |
1154595 |
T |
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| Q |
275 |
ggcataatccaac |
287 |
Q |
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| T |
1154596 |
ggcataatccaac |
1154608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 208
Target Start/End: Complemental strand, 1155160 - 1155121
Alignment:
| Q |
169 |
gcaaactgcaaagtaaaactccgatggttaacccgacaaa |
208 |
Q |
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| T |
1155160 |
gcaaactgcaaagtaaaactccgatagttaacccggcaaa |
1155121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 38041466 - 38041406
Alignment:
| Q |
13 |
atgagggatgaagagttgtatctgcgacttatggaattaacataagggtatgcaaagagtt |
73 |
Q |
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|||||||| ||||||||||||| || |||| ||||||||||| | |||||||||||||||| |
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| T |
38041466 |
atgagggacgaagagttgtatccgcaacttctggaattaacagaggggtatgcaaagagtt |
38041406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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