View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_233 (Length: 294)
Name: NF11453A_low_233
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_233 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 6 - 286
Target Start/End: Original strand, 2104729 - 2105027
Alignment:
| Q |
6 |
agtacattggtgacataggatagccattattactgccatgctctttattacatttaccttggttagtttttattactgtccatagttgttgtcgtaaaga |
105 |
Q |
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| T |
2104729 |
agtacattggtgacataggatagccattattactgccatgctctttattacatttaccttggttagtttttattactgtccatagttgttgtagtaaaga |
2104828 |
T |
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| Q |
106 |
atttattctggttaataaaaaatttgaaatccggtttcagaattggttataacaaaccgatcaattttactatatagtatagtactgtggactctaacaa |
205 |
Q |
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| T |
2104829 |
atttattctggttaataaaaaatttgaaatccggtttcagaatttgttataacaaaccgatcaattttactatatagtatagtactgtggactctaacaa |
2104928 |
T |
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| Q |
206 |
acacattagagctggaattggagtt---------------gagaaaccacgagcagtggaaaaagagaggtaaatt---ttcttctttatatattcttc |
286 |
Q |
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|||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2104929 |
acacattagacctggaattggagttgaaaaatcatagagagagaaatcacgagcagtggaaaaagagaggtaaattttcttcttctttatatattcttc |
2105027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 99 - 232
Target Start/End: Original strand, 2096001 - 2096140
Alignment:
| Q |
99 |
gtaaagaatttattctggttaataaaaaatttgaaatccggtttcagaattggttataacaaaccgatcaattttacta--tatagta----tagtactg |
192 |
Q |
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| T |
2096001 |
gtaaagaatttactctggttaataaaaaatttgaaatccggtttcagaatttgttataacaaaccgatcagttttactatttatactactactactactg |
2096100 |
T |
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| Q |
193 |
tggactctaacaaacacattagagctggaattggagttga |
232 |
Q |
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| T |
2096101 |
cggactctaacaaacacattagagctagacttggagttga |
2096140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 2085862 - 2085947
Alignment:
| Q |
6 |
agtacattggtgacataggatagccattattactgccatgctctttattacatttaccttggttagtttttattactgtccatagt |
91 |
Q |
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||||||||||||||||||||| || |||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
2085862 |
agtacattggtgacataggattgctattatttctgccatgctcattattacatttaccatggttggtttttattactgtccatagt |
2085947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 2052765 - 2052826
Alignment:
| Q |
112 |
tctggttaataaaaaatttgaaatccggtttcagaattggttataacaaaccgatcaatttt |
173 |
Q |
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| T |
2052765 |
tctggttcataaattatttgaaatccggtttcagaatttgttataacaaaccgatcagtttt |
2052826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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