View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_235 (Length: 292)

Name: NF11453A_low_235

Description: NF11453A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11453A_low_235

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 104; Significance: 7e-52; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 104; E-Value: 7e-52

Query Start/End: Original strand, 51 - 287

Target Start/End: Original strand, 37129099 - 37129341

Alignment:

Q	51	catgaattaactcacatggatatattttaatcaatttacgtgaaagtgaacatttttttaaggaagaagagcaattttcatcannnnnnnnnaaggatac	150	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|
T	37129099	catgaattaactcacgtggagatattttaattaattcacgtggaagtgaacatttttt-aaggaaaaagagtaattttcatcatttttttttaaggattc	37129197	T

Q	151	atgaaaccgtctaaacacaaaatatattctcatttgtgctatttacatcctttatttctggttacaccctgcaacactaatt-------nnnnnnnnntg	243	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|
T	37129198	atgaaaccgtctgaacacaaaatatattcccatttgtgctatttacatcctttacttctggttacaccctccaacactaattcaaaaacaaaaaaaaatg	37129297	T

Q	244	ccaaaaacgtcatctcatatttatatttcaaaaaccatattcct	287	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37129298	ccaaaaacgtcatatcatatttatatttcaaaaaccatattcct	37129341	T

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Target: chr3; HSP #2

Raw Score: 56; E-Value: 3e-23

Query Start/End: Original strand, 148 - 232

Target Start/End: Original strand, 37121080 - 37121166

Alignment:

Q	148	tacatgaaaccgtctaaacacaaaatat--attctcatttgtgctatttacatcctttatttctggttacaccctgcaacactaatt	232	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|
T	37121080	tacattaaaccgtctcaacacaaaatatatattctcatttgtgctatttatatcctttatttctggttacacccttcaatactaatt	37121166	T

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