View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453A_low_239 (Length: 291)

Name: NF11453A_low_239
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453A_low_239
NF11453A_low_239
[»] chr8 (5 HSPs)
chr8 (82-250)||(556683-556851)
chr8 (12-85)||(556555-556628)
chr8 (120-250)||(22573077-22573207)
chr8 (120-250)||(31734258-31734388)
chr8 (197-250)||(11066502-11066555)
[»] chr1 (11 HSPs)
chr1 (123-250)||(26793702-26793829)
chr1 (120-250)||(19806799-19806931)
chr1 (123-250)||(4076389-4076516)
chr1 (137-250)||(50004939-50005052)
chr1 (123-250)||(4950136-4950263)
chr1 (136-250)||(9383270-9383384)
chr1 (197-250)||(6768281-6768334)
chr1 (167-243)||(28883929-28884005)
chr1 (121-245)||(30209689-30209813)
chr1 (203-250)||(614929-614976)
chr1 (120-157)||(12855371-12855408)
[»] chr4 (6 HSPs)
chr4 (157-250)||(44125983-44126076)
chr4 (121-249)||(19181457-19181585)
chr4 (121-240)||(45413823-45413942)
chr4 (185-250)||(2183302-2183367)
chr4 (185-250)||(36625579-36625644)
chr4 (177-242)||(55945703-55945768)
[»] chr2 (6 HSPs)
chr2 (129-249)||(40626420-40626540)
chr2 (123-250)||(6457543-6457670)
chr2 (186-241)||(7670385-7670440)
chr2 (185-240)||(40054516-40054571)
chr2 (180-241)||(5256379-5256440)
chr2 (206-250)||(6452491-6452535)
[»] chr5 (3 HSPs)
chr5 (122-249)||(32529420-32529549)
chr5 (124-240)||(34731215-34731331)
chr5 (199-250)||(13109730-13109781)
[»] chr6 (2 HSPs)
chr6 (129-250)||(8573831-8573952)
chr6 (129-250)||(8547478-8547599)
[»] chr3 (3 HSPs)
chr3 (130-239)||(40416900-40417009)
chr3 (208-250)||(38457767-38457809)
chr3 (185-250)||(51976195-51976260)
[»] chr7 (7 HSPs)
chr7 (121-250)||(2334029-2334161)
chr7 (120-250)||(41482463-41482593)
chr7 (122-249)||(5784255-5784382)
chr7 (167-250)||(24429679-24429762)
chr7 (185-231)||(41147920-41147966)
chr7 (133-250)||(23318981-23319098)
chr7 (142-250)||(39594599-39594707)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 82 - 250
Target Start/End: Original strand, 556683 - 556851
Alignment:
Q  82 tagaaataaaacaatgagcaatcagtcataacattggtcccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatc 181  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  556683 tagaaataaaacaatgagaaatcagtcataacattgggcccgtttgatgcacatgataaggagataggatatgataaaccaatcatatcctgatccaaac 556782  T
Q  182 cgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 250  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  556783 cgctgtttcgtgcaacaatagaaaatgataaattaaacctatttctaatcatatcctattcaccctttg 556851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 556555 - 556628
Alignment:
Q  12 aagaattgaggctttattagggaagaacctgcaaataggaagttcataatcaattacatattacaatatataga 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  556555 aagaattgaggctttattagggaagaacctgcaaataggaagttcataatcaattacatattacaatatataga 556628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 250
Target Start/End: Original strand, 22573077 - 22573207
Alignment:
Q  120 cccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaac 219  Q
    |||||||| ||| ||||||||||||| | |||||||| |    ||| ||||||||  ||||||| ||||| ||||| ||| || ||||||||| || |||    
T  22573077 cccgtttggtgcgcatgataaggagacatgatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaac 22573176  T
Q  220 ttatttctaatcctatcctattcaccctttg 250  Q
     | ||||||||||||||||||| | ||||||    
T  22573177 ctgtttctaatcctatcctattgaacctttg 22573207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 250
Target Start/End: Original strand, 31734258 - 31734388
Alignment:
Q  120 cccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaac 219  Q
    |||||||| |||||||||||  |||| | |||||||||   |  || ||||||| |  |||||| ||||| ||||| |||||  ||||||||||||||||    
T  31734258 cccgtttggtgcacatgatagagagacatgatatgataggactttcctatcctgctttaatccgttgtttggtgcaccaataagaaatgataaattaaac 31734357  T
Q  220 ttatttctaatcctatcctattcaccctttg 250  Q
     |||||| |||| ||||| || |||||||||    
T  31734358 ctatttccaatcttatcccatccaccctttg 31734388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 11066502 - 11066555
Alignment:
Q  197 caatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 250  Q
    |||||| ||| ||||| |||||| ||||||||||||||||||| ||| ||||||    
T  11066502 caataggaaaggataacttaaacctatttctaatcctatcctactcagcctttg 11066555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 123 - 250
Target Start/End: Original strand, 26793702 - 26793829
Alignment:
Q  123 gtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaactta 222  Q
    ||||| ||||||||||||| ||| | ||||||||| | | ||| ||||||||| ||||||| ||||| ||||| |||||||||| ||||| |||||||||    
T  26793702 gtttggtgcacatgataagaagacatgatatgatagaactatcatatcctgattcaatccgttgtttggtgcaccaatagaaaaggataacttaaactta 26793801  T
Q  223 tttctaatcctatcctattcaccctttg 250  Q
    ||||||||||||||||| ||| ||||||    
T  26793802 tttctaatcctatcctaatcaacctttg 26793829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 120 - 250
Target Start/End: Complemental strand, 19806931 - 19806799
Alignment:
Q  120 cccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgt--gcaacaatagaaaatgataaattaa 217  Q
    |||||||| ||||||||||||||||||||||||||||||  | ||| |||||| || ||||| | ||||| ||  ||| |||||| ||| ||||||||||    
T  19806931 cccgtttggtgcacatgataaggagataggatatgataacactatcctatccttattcaatctggtgtttggtttgcatcaataggaaaggataaattaa 19806832  T
Q  218 acttatttctaatcctatcctattcaccctttg 250  Q
    || |||||||||||||||||||||||| |||||    
T  19806831 acctatttctaatcctatcctattcactctttg 19806799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 250
Target Start/End: Complemental strand, 4076516 - 4076389
Alignment:
Q  123 gtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaactta 222  Q
    ||||| ||||||||||||||||||||||||||||||  | ||| || ||| ||  |||| | ||||| ||||| |||||| ||| |||||||||||| ||    
T  4076516 gtttggtgcacatgataaggagataggatatgataacactatcatacccttatttaatctggtgtttggtgcatcaataggaaaggataaattaaaccta 4076417  T
Q  223 tttctaatcctatcctattcaccctttg 250  Q
    || ||||||||||||||||||| |||||    
T  4076416 ttactaatcctatcctattcactctttg 4076389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 250
Target Start/End: Complemental strand, 50005052 - 50004939
Alignment:
Q  137 ataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatc 236  Q
    ||||| ||||||||||||||||| | ||| |||| | ||| |||  | ||||| ||||| ||||| |||| ||||| |||||| ||||||||||||||||    
T  50005052 ataagaagataggatatgataaaactatcatatcttaatctaatttgatgtttggtgcaccaataaaaaaggataatttaaacctatttctaatcctatc 50004953  T
Q  237 ctattcaccctttg 250  Q
    ||| ||||||||||    
T  50004952 ctaatcaccctttg 50004939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 250
Target Start/End: Original strand, 4950136 - 4950263
Alignment:
Q  123 gtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaactta 222  Q
    ||||| ||||||||||||| | ||| ||||||||||||  ||| |||| || | ||||  | ||||| ||||| |||||||||||||||| ||||||| |    
T  4950136 gtttggtgcacatgataagaaaataagatatgataaacatatcctatcttgtttcaatttgatgtttggtgcatcaatagaaaatgataatttaaactca 4950235  T
Q  223 tttctaatcctatcctattcaccctttg 250  Q
    |||  |||| ||||||||| ||||||||    
T  4950236 ttttcaatcatatcctatttaccctttg 4950263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 250
Target Start/End: Complemental strand, 9383384 - 9383270
Alignment:
Q  136 gataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctat 235  Q
    |||| ||||| | ||||||||||| | |||  ||||||||  |||||  ||||| ||||| |||||| ||  ||||||||||||  |||||||||| |||    
T  9383384 gatagggagaaaagatatgataaaactatcacatcctgattaaatccattgtttggtgcaccaataggaacggataaattaaaccaatttctaatcttat 9383285  T
Q  236 cctattcaccctttg 250  Q
    |||| ||||||||||    
T  9383284 cctactcaccctttg 9383270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 6768281 - 6768334
Alignment:
Q  197 caatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 250  Q
    ||||||||||||||||||||||||||||||  ||||||| |||| || ||||||    
T  6768281 caatagaaaatgataaattaaacttatttcctatcctattctatccaacctttg 6768334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 28884005 - 28883929
Alignment:
Q  167 tatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattca 243  Q
    |||| |||| |||||| |||||| ||||| |||||| | | |||||||||||||| || ||||||||||| ||||||    
T  28884005 tatcttgattcaatccactgtttggtgcaccaatagtataggataaattaaactttttcctaatcctatcttattca 28883929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 245
Target Start/End: Original strand, 30209689 - 30209813
Alignment:
Q  121 ccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaact 220  Q
    ||||||| ||||||||||||| ||  ||| |||||||||   ||| ||||||  |  |||| | ||||| || || ||||||||||||||||| ||| ||    
T  30209689 ccgtttggtgcacatgataagaagtcagggtatgataaaattatcatatcctacttaaatctgttgtttggtacaccaatagaaaatgataaaataatct 30209788  T
Q  221 tatttctaatcctatcctattcacc 245  Q
     ||| || |||||||||||||||||    
T  30209789 cattacttatcctatcctattcacc 30209813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 614976 - 614929
Alignment:
Q  203 aaaatgataaattaaacttatttctaatcctatcctattcaccctttg 250  Q
    |||||||||||||||||| |||||||||| ||| ||| ||||||||||    
T  614976 aaaatgataaattaaactaatttctaatcttattctactcaccctttg 614929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 12855408 - 12855371
Alignment:
Q  120 cccgtttgatgcacatgataaggagataggatatgata 157  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  12855408 cccgtttggtgcacatgataaggagacaggatatgata 12855371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 44125983 - 44126076
Alignment:
Q  157 aaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 250  Q
    ||||||||| ||||||||||||||  ||| ||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  44125983 aaaccaatcatatcctgatccaatatgctatttggtgcagcaataggaaatgataaattaaacttatttctaatcctatcctattcaccttttg 44126076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 249
Target Start/End: Complemental strand, 19181585 - 19181457
Alignment:
Q  121 ccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaact 220  Q
    ||||||| |||||||||||  |||| | |||||||||||   ||| |||||||||||||||   ||||| ||||| ||| |  | ||||||||||||||     
T  19181585 ccgtttggtgcacatgatagagagacatgatatgataaaattatcctatcctgatccaatctattgtttggtgcaccaacatgatatgataaattaaacc 19181486  T
Q  221 tatttctaatcctatcctattcacccttt 249  Q
    ||||||||||||||||||| ||| |||||    
T  19181485 tatttctaatcctatcctactcatccttt 19181457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 240
Target Start/End: Complemental strand, 45413942 - 45413823
Alignment:
Q  121 ccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaact 220  Q
    ||||||| ||||| ||||| ||||| |||||| |||| | | ||| |||| |||| ||||| | ||||| ||||| |||||| ||| ||||||||||||     
T  45413942 ccgtttggtgcacttgatagggagacaggataggatagaactatcatatcttgattcaatcggttgtttggtgcaccaataggaaaggataaattaaacc 45413843  T
Q  221 tatttctaatcctatcctat 240  Q
    ||||||  ||||||||||||    
T  45413842 tatttcctatcctatcctat 45413823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 2183302 - 2183367
Alignment:
Q  185 tgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 250  Q
    ||||| ||||| |||||||||| ||||||||||||| ||||| ||||||||||||| || ||||||    
T  2183302 tgtttggtgcaccaatagaaaaggataaattaaactcatttccaatcctatcctatccaacctttg 2183367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 36625644 - 36625579
Alignment:
Q  185 tgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 250  Q
    ||||| |||||  ||||| | |||||||||||||| |||| | |||||||||||||||||||||||    
T  36625644 tgtttggtgcactaataggatatgataaattaaacctattacgaatcctatcctattcaccctttg 36625579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 55945768 - 55945703
Alignment:
Q  177 caatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattc 242  Q
    ||||||| ||||| ||||| |||||| ||| |||||||  ||  ||||||||||||||||||||||    
T  55945768 caatccgttgtttggtgcaccaataggaaaggataaatccaatctatttctaatcctatcctattc 55945703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 249
Target Start/End: Original strand, 40626420 - 40626540
Alignment:
Q  129 tgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttcta 228  Q
    ||||||||||| | ||| ||||||||||||| | ||| |||| |||| ||||| ||||||| ||||| |||||| ||| ||||| |||||  ||||||||    
T  40626420 tgcacatgataggaagacaggatatgataaaactatcatatcttgattcaatctgctgtttggtgcaccaataggaaaggataatttaaatatatttcta 40626519  T
Q  229 atcctatcctattcacccttt 249  Q
    ||||||||||| |||||||||    
T  40626520 atcctatcctactcacccttt 40626540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 250
Target Start/End: Original strand, 6457543 - 6457670
Alignment:
Q  123 gtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaactta 222  Q
    ||||| |||||||||||  |||| ||||||||||| | | ||| |||| |||| ||||| | ||||| ||||| ||||||||||||||||||||||   |    
T  6457543 gtttggtgcacatgatagagagacaggatatgatagaactatcatatcatgattcaatctgttgtttggtgcaccaatagaaaatgataaattaaatcaa 6457642  T
Q  223 tttctaatcctatcctattcaccctttg 250  Q
    |||| |||| |||| ||| |||||||||    
T  6457643 tttccaatcatatcttatccaccctttg 6457670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 7670385 - 7670440
Alignment:
Q  186 gtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctatt 241  Q
    |||| ||||| |||||||||||||||| || ||| | |||||||||||||||||||    
T  7670385 gtttggtgcaccaatagaaaatgataagtttaacctgtttctaatcctatcctatt 7670440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 40054571 - 40054516
Alignment:
Q  185 tgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctat 240  Q
    ||||| ||||| ||||||||||||||||| ||||| ||||  ||||||||||||||    
T  40054571 tgtttggtgcaccaatagaaaatgataaactaaacctattgttaatcctatcctat 40054516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 5256379 - 5256440
Alignment:
Q  180 tccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctatt 241  Q
    |||||||||| ||||| |  ||| |||||||||||||||||| ||  |||||||||||||||    
T  5256379 tccgctgtttggtgcaccggtaggaaatgataaattaaacttgttgttaatcctatcctatt 5256440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 6452491 - 6452535
Alignment:
Q  206 atgataaattaaacttatttctaatcctatcctattcaccctttg 250  Q
    |||||||||||||| |||| |||||| |||||||||||| |||||    
T  6452491 atgataaattaaacctattactaatcttatcctattcacgctttg 6452535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 122 - 249
Target Start/End: Complemental strand, 32529549 - 32529420
Alignment:
Q  122 cgtttgatgcacatgataaggagataggatatgataaaccaatcgtat--cctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaac 219  Q
    |||||||||||||||||||| ||| | ||||||||||| | ||| |||  | |  | ||||||||||||| ||||| ||||| ||||  |||||||||||    
T  32529549 cgtttgatgcacatgataagaagacaagatatgataaaactatcatatatcttacttcaatccgctgtttggtgcaccaataaaaaagaataaattaaac 32529450  T
Q  220 ttatttctaatcctatcctattcacccttt 249  Q
    |||||||||||| |||| |||||| |||||    
T  32529449 ttatttctaatcatatcttattcatccttt 32529420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 240
Target Start/End: Original strand, 34731215 - 34731331
Alignment:
Q  124 tttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttat 223  Q
    |||| ||| |||||||| |||||||||||||||||  | ||| ||||||  |  |||||  ||||| ||||| |||||| ||| |||||| ||||| |||    
T  34731215 tttggtgcgcatgataaagagataggatatgataacactatcatatcctatttaaatcccttgtttggtgcaccaataggaaaggataaactaaacctat 34731314  T
Q  224 ttctaatcctatcctat 240  Q
    |  ||||||||||||||    
T  34731315 tgttaatcctatcctat 34731331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 13109730 - 13109781
Alignment:
Q  199 atagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 250  Q
    |||||||||||||| || ||| ||||||||||| |||||||| |||||||||    
T  13109730 atagaaaatgataagtttaacatatttctaatcatatcctatccaccctttg 13109781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 250
Target Start/End: Complemental strand, 8573952 - 8573831
Alignment:
Q  129 tgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttcta 228  Q
    ||||||||||||| | | || |||||||||| ||||  ||||||| | |||||| | |||| | ||| |||||| ||||||||| |||||| ||||||||    
T  8573952 tgcacatgataagaaaacagaatatgataaaacaattctatcctgtttcaatcctccgtttggagcatcaataggaaatgataacttaaacctatttcta 8573853  T
Q  229 atcctatcctattcaccctttg 250  Q
    ||| |||| |||||||||||||    
T  8573852 atcttatcatattcaccctttg 8573831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 250
Target Start/End: Complemental strand, 8547599 - 8547478
Alignment:
Q  129 tgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttcta 228  Q
    ||||||||||| | | | || |||||||||| ||||  |||| || | |||||||| |||| | ||| |||||| ||| ||||| |||||| ||||||||    
T  8547599 tgcacatgataggaaaacagaatatgataaaacaattctatcatgtttcaatccgccgtttggagcatcaataggaaaggataacttaaacctatttcta 8547500  T
Q  229 atcctatcctattcaccctttg 250  Q
    ||| |||| |||||||||||||    
T  8547499 atcttatcatattcaccctttg 8547478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 239
Target Start/End: Original strand, 40416900 - 40417009
Alignment:
Q  130 gcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaa 229  Q
    |||||||||| | ||| ||||||||| ||| | ||| ||||||| | ||||||| ||||| ||||| ||| ||||||||||||||||||  ||||| |||    
T  40416900 gcacatgataggaagacaggatatgaaaaaactatcatatcctgcttcaatccgttgtttggtgcatcaacagaaaatgataaattaaatatatttttaa 40416999  T
Q  230 tcctatccta 239  Q
    ||||||||||    
T  40417000 tcctatccta 40417009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 250
Target Start/End: Original strand, 38457767 - 38457809
Alignment:
Q  208 gataaattaaacttatttctaatcctatcctattcaccctttg 250  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||    
T  38457767 gataatttaaactcatttctaatcctatcctattcaccttttg 38457809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 51976195 - 51976260
Alignment:
Q  185 tgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 250  Q
    ||||| ||||| ||||||||||||||||  |||   ||||||||||| ||||||||||||| ||||    
T  51976195 tgtttggtgcaccaatagaaaatgataagctaaggctatttctaatcttatcctattcaccatttg 51976260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 250
Target Start/End: Complemental strand, 2334161 - 2334029
Alignment:
Q  121 ccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctga---tccaatccgctgtttcgtgcaacaatagaaaatgataaattaa 217  Q
    ||||||||||| ||||||||||||| | ||||||||||  | ||| ||||||||   | ||||||| ||||| ||||| |||||| |   ||||| ||||    
T  2334161 ccgtttgatgcgcatgataaggagacatgatatgataacactatcatatcctgaatattcaatccggtgtttggtgcaccaataggattggataacttaa 2334062  T
Q  218 acttatttctaatcctatcctattcaccctttg 250  Q
    || ||||| ||||||||||||||||||| ||||    
T  2334061 acctatttttaatcctatcctattcaccttttg 2334029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 250
Target Start/End: Complemental strand, 41482593 - 41482463
Alignment:
Q  120 cccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaac 219  Q
    |||||||| ||||||||||| | ||| | |||| |||||| | ||| | |||||||  ||| |||||||| ||||| ||| || ||| ||||| ||||||    
T  41482593 cccgtttggtgcacatgataggaagacatgataggataaaactatcatctcctgatttaatgcgctgtttggtgcaccaacaggaaaggataacttaaac 41482494  T
Q  220 ttatttctaatcctatcctattcaccctttg 250  Q
     ||||| ||||| ||||||| ||||||||||    
T  41482493 ctatttttaatcatatcctactcaccctttg 41482463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 249
Target Start/End: Original strand, 5784255 - 5784382
Alignment:
Q  122 cgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaactt 221  Q
    |||||| | |||||||||| ||||||| ||||||| ||   ||  |||| |||||||||| |   ||| ||||| ||||| |||| ||||| ||||||||    
T  5784255 cgtttggtacacatgataaagagatagcatatgatgaaattattatatcttgatccaatcagtaatttggtgcatcaataaaaaaggataagttaaactt 5784354  T
Q  222 atttctaatcctatcctattcacccttt 249  Q
    |||||||||| |||| |||||| |||||    
T  5784355 atttctaatcgtatcatattcatccttt 5784382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 24429679 - 24429762
Alignment:
Q  167 tatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 250  Q
    ||||||||| || || |||| ||  |||| |||||||||||||||| |||||  ||||| |||||||||| || ||||||||||    
T  24429679 tatcctgattcattctgctgcttgatgcaccaatagaaaatgataatttaaaactatttataatcctatcttactcaccctttg 24429762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 41147966 - 41147920
Alignment:
Q  185 tgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatc 231  Q
    ||||| ||||| |||||||||| |||||||||||||||||| |||||    
T  41147966 tgtttggtgcatcaatagaaaaggataaattaaacttatttataatc 41147920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 250
Target Start/End: Complemental strand, 23319098 - 23318981
Alignment:
Q  133 catgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcc 232  Q
    ||||||||| ||| ||||||||||||  | ||| |||||||||  |||| | ||||| || || ||| |  ||| ||||| |||||| ||||| ||||||    
T  23319098 catgataagaagacaggatatgataacactatcatatcctgattaaatctgttgtttggtccaccaacatgaaaggataatttaaacctatttttaatcc 23318999  T
Q  233 tatcctattcaccctttg 250  Q
    ||||||||| | ||||||    
T  23318998 tatcctattgagcctttg 23318981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 250
Target Start/End: Original strand, 39594599 - 39594707
Alignment:
Q  142 gagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctatt 241  Q
    |||| ||||||||||||| | ||| ||||||  |  |||||| ||||| ||||| |||||  | ||| |||||||||| |||| |||||| |||| ||||    
T  39594599 gagagaggatatgataaaactatcatatcctacttaaatccgttgtttggtgcaccaataagatatgctaaattaaacctattactaatcttatcatatt 39594698  T
Q  242 caccctttg 250  Q
    || ||||||    
T  39594699 catcctttg 39594707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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